Experiment: 0.1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04615 and MPMX20_04616 are separated by 107 nucleotides MPMX20_04616 and MPMX20_04617 are separated by 27 nucleotides MPMX20_04617 and MPMX20_04618 are separated by 4 nucleotides
MPMX20_04615: MPMX20_04615 - Ribokinase, at 4,833,049 to 4,833,978
_04615
MPMX20_04616: MPMX20_04616 - Ribose import binding protein RbsB, at 4,834,086 to 4,834,976
_04616
MPMX20_04617: MPMX20_04617 - Ribose import permease protein RbsC, at 4,835,004 to 4,835,969
_04617
MPMX20_04618: MPMX20_04618 - Ribose import ATP-binding protein RbsA, at 4,835,974 to 4,837,479
_04618
Position (kb)
4834
4835 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 4833.103 kb on - strand at 4833.110 kb on + strand at 4833.118 kb on - strand at 4833.118 kb on - strand at 4833.139 kb on + strand at 4833.176 kb on + strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.184 kb on - strand, within MPMX20_04615 at 4833.193 kb on + strand, within MPMX20_04615 at 4833.195 kb on + strand, within MPMX20_04615 at 4833.203 kb on - strand, within MPMX20_04615 at 4833.246 kb on + strand, within MPMX20_04615 at 4833.247 kb on - strand, within MPMX20_04615 at 4833.254 kb on - strand, within MPMX20_04615 at 4833.294 kb on - strand, within MPMX20_04615 at 4833.296 kb on - strand, within MPMX20_04615 at 4833.317 kb on - strand, within MPMX20_04615 at 4833.333 kb on - strand, within MPMX20_04615 at 4833.431 kb on - strand, within MPMX20_04615 at 4833.431 kb on - strand, within MPMX20_04615 at 4833.431 kb on - strand, within MPMX20_04615 at 4833.479 kb on + strand, within MPMX20_04615 at 4833.487 kb on - strand, within MPMX20_04615 at 4833.567 kb on - strand, within MPMX20_04615 at 4833.616 kb on + strand, within MPMX20_04615 at 4833.616 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.626 kb on + strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.634 kb on - strand, within MPMX20_04615 at 4833.647 kb on - strand, within MPMX20_04615 at 4833.699 kb on + strand, within MPMX20_04615 at 4833.736 kb on - strand, within MPMX20_04615 at 4833.736 kb on - strand, within MPMX20_04615 at 4833.771 kb on - strand, within MPMX20_04615 at 4833.778 kb on + strand, within MPMX20_04615 at 4833.779 kb on + strand, within MPMX20_04615 at 4833.786 kb on - strand, within MPMX20_04615 at 4833.876 kb on + strand, within MPMX20_04615 at 4833.902 kb on + strand at 4833.980 kb on + strand at 4834.003 kb on + strand at 4834.003 kb on + strand at 4834.011 kb on - strand at 4834.054 kb on - strand at 4834.062 kb on + strand at 4834.062 kb on + strand at 4834.062 kb on + strand at 4834.070 kb on - strand at 4834.143 kb on + strand at 4834.196 kb on + strand, within MPMX20_04616 at 4834.369 kb on + strand, within MPMX20_04616 at 4834.504 kb on + strand, within MPMX20_04616 at 4834.565 kb on - strand, within MPMX20_04616 at 4834.641 kb on + strand, within MPMX20_04616 at 4834.749 kb on - strand, within MPMX20_04616 at 4834.754 kb on - strand, within MPMX20_04616 at 4834.754 kb on - strand, within MPMX20_04616 at 4834.761 kb on - strand, within MPMX20_04616 at 4834.861 kb on + strand, within MPMX20_04616 at 4834.876 kb on + strand, within MPMX20_04616 at 4834.925 kb on - strand at 4834.930 kb on - strand at 4834.942 kb on + strand at 4834.994 kb on - strand at 4834.994 kb on - strand at 4834.994 kb on - strand at 4835.009 kb on + strand at 4835.045 kb on + strand at 4835.050 kb on + strand at 4835.066 kb on + strand at 4835.186 kb on - strand, within MPMX20_04617 at 4835.186 kb on - strand, within MPMX20_04617 at 4835.199 kb on - strand, within MPMX20_04617 at 4835.234 kb on + strand, within MPMX20_04617 at 4835.237 kb on + strand, within MPMX20_04617 at 4835.239 kb on + strand, within MPMX20_04617 at 4835.239 kb on + strand, within MPMX20_04617 at 4835.239 kb on + strand, within MPMX20_04617 at 4835.242 kb on - strand, within MPMX20_04617 at 4835.242 kb on - strand, within MPMX20_04617 at 4835.247 kb on - strand, within MPMX20_04617 at 4835.247 kb on - strand, within MPMX20_04617 at 4835.247 kb on - strand, within MPMX20_04617 at 4835.287 kb on + strand, within MPMX20_04617 at 4835.287 kb on - strand, within MPMX20_04617 at 4835.406 kb on + strand, within MPMX20_04617 at 4835.469 kb on + strand, within MPMX20_04617 at 4835.492 kb on + strand, within MPMX20_04617 at 4835.536 kb on + strand, within MPMX20_04617 at 4835.536 kb on + strand, within MPMX20_04617 at 4835.569 kb on + strand, within MPMX20_04617 at 4835.577 kb on - strand, within MPMX20_04617 at 4835.615 kb on + strand, within MPMX20_04617 at 4835.625 kb on + strand, within MPMX20_04617 at 4835.633 kb on - strand, within MPMX20_04617 at 4835.714 kb on - strand, within MPMX20_04617 at 4835.740 kb on + strand, within MPMX20_04617 at 4835.760 kb on - strand, within MPMX20_04617 at 4835.800 kb on + strand, within MPMX20_04617 at 4835.832 kb on - strand, within MPMX20_04617 at 4835.842 kb on - strand, within MPMX20_04617 at 4835.843 kb on - strand, within MPMX20_04617
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,833,103 - +2.7 4,833,110 + +10.6 4,833,118 - +1.9 4,833,118 - +2.6 4,833,139 + +2.1 4,833,176 + MPMX20_04615 0.14 +2.9 4,833,184 - MPMX20_04615 0.15 +3.5 4,833,184 - MPMX20_04615 0.15 +2.1 4,833,184 - MPMX20_04615 0.15 +1.8 4,833,184 - MPMX20_04615 0.15 +2.5 4,833,193 + MPMX20_04615 0.15 +2.2 4,833,195 + MPMX20_04615 0.16 +1.6 4,833,203 - MPMX20_04615 0.17 +2.5 4,833,246 + MPMX20_04615 0.21 +1.7 4,833,247 - MPMX20_04615 0.21 +3.6 4,833,254 - MPMX20_04615 0.22 +1.5 4,833,294 - MPMX20_04615 0.26 +3.8 4,833,296 - MPMX20_04615 0.27 +2.1 4,833,317 - MPMX20_04615 0.29 +2.2 4,833,333 - MPMX20_04615 0.31 +1.9 4,833,431 - MPMX20_04615 0.41 +2.9 4,833,431 - MPMX20_04615 0.41 +2.2 4,833,431 - MPMX20_04615 0.41 +2.0 4,833,479 + MPMX20_04615 0.46 +2.6 4,833,487 - MPMX20_04615 0.47 +2.7 4,833,567 - MPMX20_04615 0.56 +2.0 4,833,616 + MPMX20_04615 0.61 +2.5 4,833,616 + MPMX20_04615 0.61 +2.3 4,833,626 + MPMX20_04615 0.62 +0.9 4,833,626 + MPMX20_04615 0.62 +2.4 4,833,626 + MPMX20_04615 0.62 +2.7 4,833,626 + MPMX20_04615 0.62 +2.5 4,833,626 + MPMX20_04615 0.62 +2.3 4,833,626 + MPMX20_04615 0.62 +3.1 4,833,626 + MPMX20_04615 0.62 +0.1 4,833,634 - MPMX20_04615 0.63 +2.2 4,833,634 - MPMX20_04615 0.63 +2.4 4,833,634 - MPMX20_04615 0.63 +2.0 4,833,634 - MPMX20_04615 0.63 +1.4 4,833,647 - MPMX20_04615 0.64 +2.1 4,833,699 + MPMX20_04615 0.70 +2.7 4,833,736 - MPMX20_04615 0.74 +2.3 4,833,736 - MPMX20_04615 0.74 +2.4 4,833,771 - MPMX20_04615 0.78 +2.1 4,833,778 + MPMX20_04615 0.78 +3.2 4,833,779 + MPMX20_04615 0.78 +2.1 4,833,786 - MPMX20_04615 0.79 +2.7 4,833,876 + MPMX20_04615 0.89 +1.3 4,833,902 + +1.9 4,833,980 + +2.2 4,834,003 + -1.0 4,834,003 + +3.4 4,834,011 - +6.1 4,834,054 - +1.6 4,834,062 + +3.2 4,834,062 + +1.7 4,834,062 + +2.2 4,834,070 - +0.6 4,834,143 + +0.6 4,834,196 + MPMX20_04616 0.12 +2.7 4,834,369 + MPMX20_04616 0.32 +0.8 4,834,504 + MPMX20_04616 0.47 +0.6 4,834,565 - MPMX20_04616 0.54 +0.2 4,834,641 + MPMX20_04616 0.62 +0.1 4,834,749 - MPMX20_04616 0.74 -2.0 4,834,754 - MPMX20_04616 0.75 -0.4 4,834,754 - MPMX20_04616 0.75 -0.6 4,834,761 - MPMX20_04616 0.76 -1.2 4,834,861 + MPMX20_04616 0.87 -0.1 4,834,876 + MPMX20_04616 0.89 +1.8 4,834,925 - -0.9 4,834,930 - -1.2 4,834,942 + -1.0 4,834,994 - +1.2 4,834,994 - +0.2 4,834,994 - -0.5 4,835,009 + +0.0 4,835,045 + +0.2 4,835,050 + +1.0 4,835,066 + +0.2 4,835,186 - MPMX20_04617 0.19 -1.2 4,835,186 - MPMX20_04617 0.19 +0.1 4,835,199 - MPMX20_04617 0.20 -2.1 4,835,234 + MPMX20_04617 0.24 +0.8 4,835,237 + MPMX20_04617 0.24 -0.1 4,835,239 + MPMX20_04617 0.24 +2.2 4,835,239 + MPMX20_04617 0.24 -0.4 4,835,239 + MPMX20_04617 0.24 -0.4 4,835,242 - MPMX20_04617 0.25 +0.1 4,835,242 - MPMX20_04617 0.25 -0.5 4,835,247 - MPMX20_04617 0.25 -0.4 4,835,247 - MPMX20_04617 0.25 +0.4 4,835,247 - MPMX20_04617 0.25 -2.9 4,835,287 + MPMX20_04617 0.29 -2.4 4,835,287 - MPMX20_04617 0.29 -1.2 4,835,406 + MPMX20_04617 0.42 -0.4 4,835,469 + MPMX20_04617 0.48 +0.9 4,835,492 + MPMX20_04617 0.51 -0.1 4,835,536 + MPMX20_04617 0.55 -0.5 4,835,536 + MPMX20_04617 0.55 +0.3 4,835,569 + MPMX20_04617 0.58 -0.6 4,835,577 - MPMX20_04617 0.59 -0.4 4,835,615 + MPMX20_04617 0.63 -0.9 4,835,625 + MPMX20_04617 0.64 +1.1 4,835,633 - MPMX20_04617 0.65 -0.5 4,835,714 - MPMX20_04617 0.73 -0.4 4,835,740 + MPMX20_04617 0.76 +1.2 4,835,760 - MPMX20_04617 0.78 +0.3 4,835,800 + MPMX20_04617 0.82 +2.2 4,835,832 - MPMX20_04617 0.86 -1.4 4,835,842 - MPMX20_04617 0.87 -0.6 4,835,843 - MPMX20_04617 0.87 -1.1
Or see this region's nucleotide sequence