Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04616

Experiment: 0.1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04615 and MPMX20_04616 are separated by 107 nucleotidesMPMX20_04616 and MPMX20_04617 are separated by 27 nucleotidesMPMX20_04617 and MPMX20_04618 are separated by 4 nucleotides MPMX20_04615: MPMX20_04615 - Ribokinase, at 4,833,049 to 4,833,978 _04615 MPMX20_04616: MPMX20_04616 - Ribose import binding protein RbsB, at 4,834,086 to 4,834,976 _04616 MPMX20_04617: MPMX20_04617 - Ribose import permease protein RbsC, at 4,835,004 to 4,835,969 _04617 MPMX20_04618: MPMX20_04618 - Ribose import ATP-binding protein RbsA, at 4,835,974 to 4,837,479 _04618 Position (kb) 4834 4835Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 4833.103 kb on - strandat 4833.110 kb on + strandat 4833.118 kb on - strandat 4833.118 kb on - strandat 4833.139 kb on + strandat 4833.176 kb on + strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.184 kb on - strand, within MPMX20_04615at 4833.193 kb on + strand, within MPMX20_04615at 4833.195 kb on + strand, within MPMX20_04615at 4833.203 kb on - strand, within MPMX20_04615at 4833.246 kb on + strand, within MPMX20_04615at 4833.247 kb on - strand, within MPMX20_04615at 4833.254 kb on - strand, within MPMX20_04615at 4833.294 kb on - strand, within MPMX20_04615at 4833.296 kb on - strand, within MPMX20_04615at 4833.317 kb on - strand, within MPMX20_04615at 4833.333 kb on - strand, within MPMX20_04615at 4833.431 kb on - strand, within MPMX20_04615at 4833.431 kb on - strand, within MPMX20_04615at 4833.431 kb on - strand, within MPMX20_04615at 4833.479 kb on + strand, within MPMX20_04615at 4833.487 kb on - strand, within MPMX20_04615at 4833.567 kb on - strand, within MPMX20_04615at 4833.616 kb on + strand, within MPMX20_04615at 4833.616 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.626 kb on + strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.634 kb on - strand, within MPMX20_04615at 4833.647 kb on - strand, within MPMX20_04615at 4833.699 kb on + strand, within MPMX20_04615at 4833.736 kb on - strand, within MPMX20_04615at 4833.736 kb on - strand, within MPMX20_04615at 4833.771 kb on - strand, within MPMX20_04615at 4833.778 kb on + strand, within MPMX20_04615at 4833.779 kb on + strand, within MPMX20_04615at 4833.786 kb on - strand, within MPMX20_04615at 4833.876 kb on + strand, within MPMX20_04615at 4833.902 kb on + strandat 4833.980 kb on + strandat 4834.003 kb on + strandat 4834.003 kb on + strandat 4834.011 kb on - strandat 4834.054 kb on - strandat 4834.062 kb on + strandat 4834.062 kb on + strandat 4834.062 kb on + strandat 4834.070 kb on - strandat 4834.143 kb on + strandat 4834.196 kb on + strand, within MPMX20_04616at 4834.369 kb on + strand, within MPMX20_04616at 4834.504 kb on + strand, within MPMX20_04616at 4834.565 kb on - strand, within MPMX20_04616at 4834.641 kb on + strand, within MPMX20_04616at 4834.749 kb on - strand, within MPMX20_04616at 4834.754 kb on - strand, within MPMX20_04616at 4834.754 kb on - strand, within MPMX20_04616at 4834.761 kb on - strand, within MPMX20_04616at 4834.861 kb on + strand, within MPMX20_04616at 4834.876 kb on + strand, within MPMX20_04616at 4834.925 kb on - strandat 4834.930 kb on - strandat 4834.942 kb on + strandat 4834.994 kb on - strandat 4834.994 kb on - strandat 4834.994 kb on - strandat 4835.009 kb on + strandat 4835.045 kb on + strandat 4835.050 kb on + strandat 4835.066 kb on + strandat 4835.186 kb on - strand, within MPMX20_04617at 4835.186 kb on - strand, within MPMX20_04617at 4835.199 kb on - strand, within MPMX20_04617at 4835.234 kb on + strand, within MPMX20_04617at 4835.237 kb on + strand, within MPMX20_04617at 4835.239 kb on + strand, within MPMX20_04617at 4835.239 kb on + strand, within MPMX20_04617at 4835.239 kb on + strand, within MPMX20_04617at 4835.242 kb on - strand, within MPMX20_04617at 4835.242 kb on - strand, within MPMX20_04617at 4835.247 kb on - strand, within MPMX20_04617at 4835.247 kb on - strand, within MPMX20_04617at 4835.247 kb on - strand, within MPMX20_04617at 4835.287 kb on + strand, within MPMX20_04617at 4835.287 kb on - strand, within MPMX20_04617at 4835.406 kb on + strand, within MPMX20_04617at 4835.469 kb on + strand, within MPMX20_04617at 4835.492 kb on + strand, within MPMX20_04617at 4835.536 kb on + strand, within MPMX20_04617at 4835.536 kb on + strand, within MPMX20_04617at 4835.569 kb on + strand, within MPMX20_04617at 4835.577 kb on - strand, within MPMX20_04617at 4835.615 kb on + strand, within MPMX20_04617at 4835.625 kb on + strand, within MPMX20_04617at 4835.633 kb on - strand, within MPMX20_04617at 4835.714 kb on - strand, within MPMX20_04617at 4835.740 kb on + strand, within MPMX20_04617at 4835.760 kb on - strand, within MPMX20_04617at 4835.800 kb on + strand, within MPMX20_04617at 4835.832 kb on - strand, within MPMX20_04617at 4835.842 kb on - strand, within MPMX20_04617at 4835.843 kb on - strand, within MPMX20_04617

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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4,833,103 - +2.7
4,833,110 + +10.6
4,833,118 - +1.9
4,833,118 - +2.6
4,833,139 + +2.1
4,833,176 + MPMX20_04615 0.14 +2.9
4,833,184 - MPMX20_04615 0.15 +3.5
4,833,184 - MPMX20_04615 0.15 +2.1
4,833,184 - MPMX20_04615 0.15 +1.8
4,833,184 - MPMX20_04615 0.15 +2.5
4,833,193 + MPMX20_04615 0.15 +2.2
4,833,195 + MPMX20_04615 0.16 +1.6
4,833,203 - MPMX20_04615 0.17 +2.5
4,833,246 + MPMX20_04615 0.21 +1.7
4,833,247 - MPMX20_04615 0.21 +3.6
4,833,254 - MPMX20_04615 0.22 +1.5
4,833,294 - MPMX20_04615 0.26 +3.8
4,833,296 - MPMX20_04615 0.27 +2.1
4,833,317 - MPMX20_04615 0.29 +2.2
4,833,333 - MPMX20_04615 0.31 +1.9
4,833,431 - MPMX20_04615 0.41 +2.9
4,833,431 - MPMX20_04615 0.41 +2.2
4,833,431 - MPMX20_04615 0.41 +2.0
4,833,479 + MPMX20_04615 0.46 +2.6
4,833,487 - MPMX20_04615 0.47 +2.7
4,833,567 - MPMX20_04615 0.56 +2.0
4,833,616 + MPMX20_04615 0.61 +2.5
4,833,616 + MPMX20_04615 0.61 +2.3
4,833,626 + MPMX20_04615 0.62 +0.9
4,833,626 + MPMX20_04615 0.62 +2.4
4,833,626 + MPMX20_04615 0.62 +2.7
4,833,626 + MPMX20_04615 0.62 +2.5
4,833,626 + MPMX20_04615 0.62 +2.3
4,833,626 + MPMX20_04615 0.62 +3.1
4,833,626 + MPMX20_04615 0.62 +0.1
4,833,634 - MPMX20_04615 0.63 +2.2
4,833,634 - MPMX20_04615 0.63 +2.4
4,833,634 - MPMX20_04615 0.63 +2.0
4,833,634 - MPMX20_04615 0.63 +1.4
4,833,647 - MPMX20_04615 0.64 +2.1
4,833,699 + MPMX20_04615 0.70 +2.7
4,833,736 - MPMX20_04615 0.74 +2.3
4,833,736 - MPMX20_04615 0.74 +2.4
4,833,771 - MPMX20_04615 0.78 +2.1
4,833,778 + MPMX20_04615 0.78 +3.2
4,833,779 + MPMX20_04615 0.78 +2.1
4,833,786 - MPMX20_04615 0.79 +2.7
4,833,876 + MPMX20_04615 0.89 +1.3
4,833,902 + +1.9
4,833,980 + +2.2
4,834,003 + -1.0
4,834,003 + +3.4
4,834,011 - +6.1
4,834,054 - +1.6
4,834,062 + +3.2
4,834,062 + +1.7
4,834,062 + +2.2
4,834,070 - +0.6
4,834,143 + +0.6
4,834,196 + MPMX20_04616 0.12 +2.7
4,834,369 + MPMX20_04616 0.32 +0.8
4,834,504 + MPMX20_04616 0.47 +0.6
4,834,565 - MPMX20_04616 0.54 +0.2
4,834,641 + MPMX20_04616 0.62 +0.1
4,834,749 - MPMX20_04616 0.74 -2.0
4,834,754 - MPMX20_04616 0.75 -0.4
4,834,754 - MPMX20_04616 0.75 -0.6
4,834,761 - MPMX20_04616 0.76 -1.2
4,834,861 + MPMX20_04616 0.87 -0.1
4,834,876 + MPMX20_04616 0.89 +1.8
4,834,925 - -0.9
4,834,930 - -1.2
4,834,942 + -1.0
4,834,994 - +1.2
4,834,994 - +0.2
4,834,994 - -0.5
4,835,009 + +0.0
4,835,045 + +0.2
4,835,050 + +1.0
4,835,066 + +0.2
4,835,186 - MPMX20_04617 0.19 -1.2
4,835,186 - MPMX20_04617 0.19 +0.1
4,835,199 - MPMX20_04617 0.20 -2.1
4,835,234 + MPMX20_04617 0.24 +0.8
4,835,237 + MPMX20_04617 0.24 -0.1
4,835,239 + MPMX20_04617 0.24 +2.2
4,835,239 + MPMX20_04617 0.24 -0.4
4,835,239 + MPMX20_04617 0.24 -0.4
4,835,242 - MPMX20_04617 0.25 +0.1
4,835,242 - MPMX20_04617 0.25 -0.5
4,835,247 - MPMX20_04617 0.25 -0.4
4,835,247 - MPMX20_04617 0.25 +0.4
4,835,247 - MPMX20_04617 0.25 -2.9
4,835,287 + MPMX20_04617 0.29 -2.4
4,835,287 - MPMX20_04617 0.29 -1.2
4,835,406 + MPMX20_04617 0.42 -0.4
4,835,469 + MPMX20_04617 0.48 +0.9
4,835,492 + MPMX20_04617 0.51 -0.1
4,835,536 + MPMX20_04617 0.55 -0.5
4,835,536 + MPMX20_04617 0.55 +0.3
4,835,569 + MPMX20_04617 0.58 -0.6
4,835,577 - MPMX20_04617 0.59 -0.4
4,835,615 + MPMX20_04617 0.63 -0.9
4,835,625 + MPMX20_04617 0.64 +1.1
4,835,633 - MPMX20_04617 0.65 -0.5
4,835,714 - MPMX20_04617 0.73 -0.4
4,835,740 + MPMX20_04617 0.76 +1.2
4,835,760 - MPMX20_04617 0.78 +0.3
4,835,800 + MPMX20_04617 0.82 +2.2
4,835,832 - MPMX20_04617 0.86 -1.4
4,835,842 - MPMX20_04617 0.87 -0.6
4,835,843 - MPMX20_04617 0.87 -1.1

Or see this region's nucleotide sequence