Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04484 and MPMX20_04485 are separated by 4 nucleotides MPMX20_04485 and MPMX20_04486 overlap by 4 nucleotides
MPMX20_04484: MPMX20_04484 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,688,153 to 4,689,283
_04484
MPMX20_04485: MPMX20_04485 - dTDP-fucosamine acetyltransferase, at 4,689,288 to 4,689,965
_04485
MPMX20_04486: MPMX20_04486 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 4,689,962 to 4,691,224
_04486
Position (kb)
4689
4690 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4688.358 kb on - strand, within MPMX20_04484 at 4688.358 kb on - strand, within MPMX20_04484 at 4688.400 kb on + strand, within MPMX20_04484 at 4688.447 kb on - strand, within MPMX20_04484 at 4688.538 kb on + strand, within MPMX20_04484 at 4688.538 kb on + strand, within MPMX20_04484 at 4688.546 kb on - strand, within MPMX20_04484 at 4688.546 kb on - strand, within MPMX20_04484 at 4688.546 kb on - strand, within MPMX20_04484 at 4688.609 kb on + strand, within MPMX20_04484 at 4688.616 kb on - strand, within MPMX20_04484 at 4688.679 kb on + strand, within MPMX20_04484 at 4688.697 kb on - strand, within MPMX20_04484 at 4688.697 kb on - strand, within MPMX20_04484 at 4688.697 kb on - strand, within MPMX20_04484 at 4688.755 kb on + strand, within MPMX20_04484 at 4688.755 kb on + strand, within MPMX20_04484 at 4688.824 kb on - strand, within MPMX20_04484 at 4688.896 kb on - strand, within MPMX20_04484 at 4688.919 kb on - strand, within MPMX20_04484 at 4688.958 kb on + strand, within MPMX20_04484 at 4689.016 kb on + strand, within MPMX20_04484 at 4689.016 kb on + strand, within MPMX20_04484 at 4689.019 kb on - strand, within MPMX20_04484 at 4689.024 kb on - strand, within MPMX20_04484 at 4689.037 kb on + strand, within MPMX20_04484 at 4689.052 kb on - strand, within MPMX20_04484 at 4689.117 kb on + strand, within MPMX20_04484 at 4689.193 kb on - strand at 4689.218 kb on + strand at 4689.218 kb on + strand at 4689.218 kb on + strand at 4689.226 kb on - strand at 4689.226 kb on - strand at 4689.374 kb on - strand, within MPMX20_04485 at 4689.374 kb on - strand, within MPMX20_04485 at 4689.388 kb on + strand, within MPMX20_04485 at 4689.414 kb on + strand, within MPMX20_04485 at 4689.450 kb on + strand, within MPMX20_04485 at 4689.479 kb on + strand, within MPMX20_04485 at 4689.554 kb on + strand, within MPMX20_04485 at 4689.617 kb on + strand, within MPMX20_04485 at 4689.621 kb on + strand, within MPMX20_04485 at 4689.629 kb on - strand, within MPMX20_04485 at 4689.654 kb on + strand, within MPMX20_04485 at 4689.685 kb on - strand, within MPMX20_04485 at 4689.687 kb on + strand, within MPMX20_04485 at 4689.687 kb on + strand, within MPMX20_04485 at 4689.690 kb on - strand, within MPMX20_04485 at 4689.754 kb on - strand, within MPMX20_04485 at 4689.754 kb on - strand, within MPMX20_04485 at 4689.757 kb on + strand, within MPMX20_04485 at 4689.765 kb on - strand, within MPMX20_04485 at 4689.775 kb on - strand, within MPMX20_04485 at 4689.808 kb on - strand, within MPMX20_04485 at 4689.861 kb on + strand, within MPMX20_04485 at 4689.861 kb on + strand, within MPMX20_04485 at 4689.906 kb on - strand at 4690.003 kb on - strand at 4690.006 kb on + strand at 4690.174 kb on - strand, within MPMX20_04486 at 4690.176 kb on + strand, within MPMX20_04486 at 4690.184 kb on - strand, within MPMX20_04486 at 4690.243 kb on + strand, within MPMX20_04486 at 4690.243 kb on + strand, within MPMX20_04486 at 4690.243 kb on + strand, within MPMX20_04486 at 4690.251 kb on - strand, within MPMX20_04486 at 4690.296 kb on - strand, within MPMX20_04486 at 4690.311 kb on + strand, within MPMX20_04486 at 4690.319 kb on - strand, within MPMX20_04486 at 4690.319 kb on - strand, within MPMX20_04486 at 4690.340 kb on - strand, within MPMX20_04486 at 4690.422 kb on + strand, within MPMX20_04486 at 4690.422 kb on + strand, within MPMX20_04486 at 4690.436 kb on + strand, within MPMX20_04486 at 4690.444 kb on - strand, within MPMX20_04486 at 4690.509 kb on - strand, within MPMX20_04486 at 4690.522 kb on - strand, within MPMX20_04486 at 4690.671 kb on + strand, within MPMX20_04486 at 4690.679 kb on - strand, within MPMX20_04486 at 4690.722 kb on + strand, within MPMX20_04486 at 4690.727 kb on + strand, within MPMX20_04486 at 4690.727 kb on + strand, within MPMX20_04486 at 4690.755 kb on - strand, within MPMX20_04486 at 4690.755 kb on - strand, within MPMX20_04486 at 4690.802 kb on + strand, within MPMX20_04486 at 4690.810 kb on - strand, within MPMX20_04486 at 4690.820 kb on - strand, within MPMX20_04486 at 4690.888 kb on - strand, within MPMX20_04486
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,688,358 - MPMX20_04484 0.18 -3.4 4,688,358 - MPMX20_04484 0.18 -0.9 4,688,400 + MPMX20_04484 0.22 -0.3 4,688,447 - MPMX20_04484 0.26 +0.3 4,688,538 + MPMX20_04484 0.34 -1.7 4,688,538 + MPMX20_04484 0.34 -0.1 4,688,546 - MPMX20_04484 0.35 -2.5 4,688,546 - MPMX20_04484 0.35 -1.0 4,688,546 - MPMX20_04484 0.35 -1.9 4,688,609 + MPMX20_04484 0.40 +1.2 4,688,616 - MPMX20_04484 0.41 +1.0 4,688,679 + MPMX20_04484 0.47 -2.4 4,688,697 - MPMX20_04484 0.48 +0.2 4,688,697 - MPMX20_04484 0.48 -2.5 4,688,697 - MPMX20_04484 0.48 -0.3 4,688,755 + MPMX20_04484 0.53 +0.8 4,688,755 + MPMX20_04484 0.53 -0.4 4,688,824 - MPMX20_04484 0.59 -1.3 4,688,896 - MPMX20_04484 0.66 -2.0 4,688,919 - MPMX20_04484 0.68 +0.6 4,688,958 + MPMX20_04484 0.71 -1.4 4,689,016 + MPMX20_04484 0.76 +1.0 4,689,016 + MPMX20_04484 0.76 -2.5 4,689,019 - MPMX20_04484 0.77 -1.6 4,689,024 - MPMX20_04484 0.77 +2.2 4,689,037 + MPMX20_04484 0.78 -2.2 4,689,052 - MPMX20_04484 0.79 -0.2 4,689,117 + MPMX20_04484 0.85 +0.3 4,689,193 - -1.3 4,689,218 + -1.5 4,689,218 + +0.4 4,689,218 + +1.2 4,689,226 - -0.1 4,689,226 - -1.4 4,689,374 - MPMX20_04485 0.13 -2.7 4,689,374 - MPMX20_04485 0.13 -0.1 4,689,388 + MPMX20_04485 0.15 +1.2 4,689,414 + MPMX20_04485 0.19 -0.8 4,689,450 + MPMX20_04485 0.24 -0.1 4,689,479 + MPMX20_04485 0.28 +0.1 4,689,554 + MPMX20_04485 0.39 -2.5 4,689,617 + MPMX20_04485 0.49 +0.6 4,689,621 + MPMX20_04485 0.49 -1.4 4,689,629 - MPMX20_04485 0.50 -2.0 4,689,654 + MPMX20_04485 0.54 -2.2 4,689,685 - MPMX20_04485 0.59 -0.4 4,689,687 + MPMX20_04485 0.59 -0.4 4,689,687 + MPMX20_04485 0.59 +0.6 4,689,690 - MPMX20_04485 0.59 -3.2 4,689,754 - MPMX20_04485 0.69 -1.7 4,689,754 - MPMX20_04485 0.69 -0.3 4,689,757 + MPMX20_04485 0.69 -1.5 4,689,765 - MPMX20_04485 0.70 -1.9 4,689,775 - MPMX20_04485 0.72 -1.9 4,689,808 - MPMX20_04485 0.77 -0.6 4,689,861 + MPMX20_04485 0.85 +0.4 4,689,861 + MPMX20_04485 0.85 -1.0 4,689,906 - -2.1 4,690,003 - +2.2 4,690,006 + -0.0 4,690,174 - MPMX20_04486 0.17 +0.2 4,690,176 + MPMX20_04486 0.17 -1.5 4,690,184 - MPMX20_04486 0.18 +2.2 4,690,243 + MPMX20_04486 0.22 +0.5 4,690,243 + MPMX20_04486 0.22 +0.2 4,690,243 + MPMX20_04486 0.22 -0.9 4,690,251 - MPMX20_04486 0.23 +0.6 4,690,296 - MPMX20_04486 0.26 -0.6 4,690,311 + MPMX20_04486 0.28 +0.6 4,690,319 - MPMX20_04486 0.28 -0.0 4,690,319 - MPMX20_04486 0.28 -1.1 4,690,340 - MPMX20_04486 0.30 +0.5 4,690,422 + MPMX20_04486 0.36 +0.2 4,690,422 + MPMX20_04486 0.36 -0.2 4,690,436 + MPMX20_04486 0.38 -1.0 4,690,444 - MPMX20_04486 0.38 -1.0 4,690,509 - MPMX20_04486 0.43 -2.0 4,690,522 - MPMX20_04486 0.44 +0.1 4,690,671 + MPMX20_04486 0.56 -0.3 4,690,679 - MPMX20_04486 0.57 -0.1 4,690,722 + MPMX20_04486 0.60 -0.4 4,690,727 + MPMX20_04486 0.61 +0.3 4,690,727 + MPMX20_04486 0.61 -1.3 4,690,755 - MPMX20_04486 0.63 -0.4 4,690,755 - MPMX20_04486 0.63 -2.4 4,690,802 + MPMX20_04486 0.67 +0.9 4,690,810 - MPMX20_04486 0.67 -1.4 4,690,820 - MPMX20_04486 0.68 +2.2 4,690,888 - MPMX20_04486 0.73 -0.4
Or see this region's nucleotide sequence