Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04480

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04479 and MPMX20_04480 are separated by 197 nucleotidesMPMX20_04480 and MPMX20_04481 are separated by 12 nucleotides MPMX20_04479: MPMX20_04479 - putative transport protein YifK, at 4,682,140 to 4,683,525 _04479 MPMX20_04480: MPMX20_04480 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 4,683,723 to 4,684,463 _04480 MPMX20_04481: MPMX20_04481 - putative ECA polymerase, at 4,684,476 to 4,685,828 _04481 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4682.819 kb on + strand, within MPMX20_04479at 4682.824 kb on + strand, within MPMX20_04479at 4682.824 kb on + strand, within MPMX20_04479at 4682.859 kb on + strand, within MPMX20_04479at 4682.859 kb on + strand, within MPMX20_04479at 4682.867 kb on - strand, within MPMX20_04479at 4682.882 kb on - strand, within MPMX20_04479at 4682.905 kb on + strand, within MPMX20_04479at 4682.908 kb on - strand, within MPMX20_04479at 4682.908 kb on - strand, within MPMX20_04479at 4682.908 kb on - strand, within MPMX20_04479at 4682.976 kb on - strand, within MPMX20_04479at 4683.107 kb on + strand, within MPMX20_04479at 4683.109 kb on - strand, within MPMX20_04479at 4683.115 kb on - strand, within MPMX20_04479at 4683.124 kb on - strand, within MPMX20_04479at 4683.178 kb on - strand, within MPMX20_04479at 4683.211 kb on - strand, within MPMX20_04479at 4683.228 kb on + strand, within MPMX20_04479at 4683.236 kb on - strand, within MPMX20_04479at 4683.256 kb on - strand, within MPMX20_04479at 4683.391 kb on + strandat 4683.391 kb on - strandat 4683.436 kb on - strandat 4683.452 kb on + strandat 4683.494 kb on - strandat 4683.555 kb on + strandat 4683.606 kb on - strandat 4683.658 kb on + strandat 4683.736 kb on + strandat 4683.736 kb on + strandat 4683.736 kb on + strandat 4683.746 kb on + strandat 4683.790 kb on + strandat 4683.791 kb on + strandat 4683.824 kb on - strand, within MPMX20_04480at 4683.850 kb on + strand, within MPMX20_04480at 4683.850 kb on + strand, within MPMX20_04480at 4683.850 kb on + strand, within MPMX20_04480at 4683.858 kb on - strand, within MPMX20_04480at 4683.870 kb on + strand, within MPMX20_04480at 4683.915 kb on + strand, within MPMX20_04480at 4683.917 kb on + strand, within MPMX20_04480at 4683.917 kb on + strand, within MPMX20_04480at 4683.923 kb on - strand, within MPMX20_04480at 4683.925 kb on - strand, within MPMX20_04480at 4683.942 kb on + strand, within MPMX20_04480at 4683.950 kb on - strand, within MPMX20_04480at 4683.993 kb on - strand, within MPMX20_04480at 4684.000 kb on + strand, within MPMX20_04480at 4684.027 kb on + strand, within MPMX20_04480at 4684.059 kb on - strand, within MPMX20_04480at 4684.106 kb on + strand, within MPMX20_04480at 4684.149 kb on - strand, within MPMX20_04480at 4684.156 kb on + strand, within MPMX20_04480at 4684.205 kb on - strand, within MPMX20_04480at 4684.234 kb on - strand, within MPMX20_04480at 4684.292 kb on + strand, within MPMX20_04480at 4684.300 kb on - strand, within MPMX20_04480at 4684.310 kb on - strand, within MPMX20_04480at 4684.423 kb on - strandat 4684.430 kb on + strandat 4684.442 kb on + strandat 4684.490 kb on + strandat 4684.490 kb on + strandat 4684.490 kb on + strandat 4684.490 kb on + strandat 4684.490 kb on + strandat 4684.498 kb on - strandat 4684.498 kb on - strandat 4684.526 kb on + strandat 4684.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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4,682,819 + MPMX20_04479 0.49 +0.8
4,682,824 + MPMX20_04479 0.49 -1.3
4,682,824 + MPMX20_04479 0.49 -0.7
4,682,859 + MPMX20_04479 0.52 -0.4
4,682,859 + MPMX20_04479 0.52 +0.8
4,682,867 - MPMX20_04479 0.52 -0.9
4,682,882 - MPMX20_04479 0.54 +1.0
4,682,905 + MPMX20_04479 0.55 -1.5
4,682,908 - MPMX20_04479 0.55 +0.4
4,682,908 - MPMX20_04479 0.55 +0.3
4,682,908 - MPMX20_04479 0.55 -0.3
4,682,976 - MPMX20_04479 0.60 +3.2
4,683,107 + MPMX20_04479 0.70 -1.0
4,683,109 - MPMX20_04479 0.70 -0.6
4,683,115 - MPMX20_04479 0.70 -0.0
4,683,124 - MPMX20_04479 0.71 -0.4
4,683,178 - MPMX20_04479 0.75 +1.0
4,683,211 - MPMX20_04479 0.77 -0.6
4,683,228 + MPMX20_04479 0.78 -0.2
4,683,236 - MPMX20_04479 0.79 +0.0
4,683,256 - MPMX20_04479 0.81 -0.3
4,683,391 + -0.2
4,683,391 - -0.9
4,683,436 - -1.6
4,683,452 + +1.2
4,683,494 - +0.0
4,683,555 + -0.5
4,683,606 - +0.6
4,683,658 + -0.1
4,683,736 + -0.1
4,683,736 + +1.2
4,683,736 + +2.2
4,683,746 + +0.5
4,683,790 + -1.1
4,683,791 + -1.2
4,683,824 - MPMX20_04480 0.14 -2.4
4,683,850 + MPMX20_04480 0.17 -1.8
4,683,850 + MPMX20_04480 0.17 -1.4
4,683,850 + MPMX20_04480 0.17 +0.6
4,683,858 - MPMX20_04480 0.18 +0.2
4,683,870 + MPMX20_04480 0.20 -1.6
4,683,915 + MPMX20_04480 0.26 -0.8
4,683,917 + MPMX20_04480 0.26 -1.6
4,683,917 + MPMX20_04480 0.26 -0.5
4,683,923 - MPMX20_04480 0.27 +0.2
4,683,925 - MPMX20_04480 0.27 -1.7
4,683,942 + MPMX20_04480 0.30 +0.0
4,683,950 - MPMX20_04480 0.31 -0.4
4,683,993 - MPMX20_04480 0.36 -0.8
4,684,000 + MPMX20_04480 0.37 +0.6
4,684,027 + MPMX20_04480 0.41 -2.6
4,684,059 - MPMX20_04480 0.45 -0.2
4,684,106 + MPMX20_04480 0.52 +0.6
4,684,149 - MPMX20_04480 0.57 -1.3
4,684,156 + MPMX20_04480 0.58 -0.4
4,684,205 - MPMX20_04480 0.65 -1.4
4,684,234 - MPMX20_04480 0.69 -1.0
4,684,292 + MPMX20_04480 0.77 +2.2
4,684,300 - MPMX20_04480 0.78 +0.2
4,684,310 - MPMX20_04480 0.79 +1.2
4,684,423 - +0.3
4,684,430 + -1.1
4,684,442 + +2.2
4,684,490 + -0.3
4,684,490 + +0.8
4,684,490 + +0.9
4,684,490 + +1.5
4,684,490 + -0.3
4,684,498 - -0.6
4,684,498 - -2.4
4,684,526 + -0.8
4,684,534 - +2.2

Or see this region's nucleotide sequence