Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04479 and MPMX20_04480 are separated by 197 nucleotides MPMX20_04480 and MPMX20_04481 are separated by 12 nucleotides
MPMX20_04479: MPMX20_04479 - putative transport protein YifK, at 4,682,140 to 4,683,525
_04479
MPMX20_04480: MPMX20_04480 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 4,683,723 to 4,684,463
_04480
MPMX20_04481: MPMX20_04481 - putative ECA polymerase, at 4,684,476 to 4,685,828
_04481
Position (kb)
4683
4684
4685 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4682.819 kb on + strand, within MPMX20_04479 at 4682.824 kb on + strand, within MPMX20_04479 at 4682.824 kb on + strand, within MPMX20_04479 at 4682.859 kb on + strand, within MPMX20_04479 at 4682.859 kb on + strand, within MPMX20_04479 at 4682.867 kb on - strand, within MPMX20_04479 at 4682.882 kb on - strand, within MPMX20_04479 at 4682.905 kb on + strand, within MPMX20_04479 at 4682.908 kb on - strand, within MPMX20_04479 at 4682.908 kb on - strand, within MPMX20_04479 at 4682.908 kb on - strand, within MPMX20_04479 at 4682.976 kb on - strand, within MPMX20_04479 at 4683.107 kb on + strand, within MPMX20_04479 at 4683.109 kb on - strand, within MPMX20_04479 at 4683.115 kb on - strand, within MPMX20_04479 at 4683.124 kb on - strand, within MPMX20_04479 at 4683.178 kb on - strand, within MPMX20_04479 at 4683.211 kb on - strand, within MPMX20_04479 at 4683.228 kb on + strand, within MPMX20_04479 at 4683.236 kb on - strand, within MPMX20_04479 at 4683.256 kb on - strand, within MPMX20_04479 at 4683.391 kb on + strand at 4683.391 kb on - strand at 4683.436 kb on - strand at 4683.452 kb on + strand at 4683.494 kb on - strand at 4683.555 kb on + strand at 4683.606 kb on - strand at 4683.658 kb on + strand at 4683.736 kb on + strand at 4683.736 kb on + strand at 4683.736 kb on + strand at 4683.746 kb on + strand at 4683.790 kb on + strand at 4683.791 kb on + strand at 4683.824 kb on - strand, within MPMX20_04480 at 4683.850 kb on + strand, within MPMX20_04480 at 4683.850 kb on + strand, within MPMX20_04480 at 4683.850 kb on + strand, within MPMX20_04480 at 4683.858 kb on - strand, within MPMX20_04480 at 4683.870 kb on + strand, within MPMX20_04480 at 4683.915 kb on + strand, within MPMX20_04480 at 4683.917 kb on + strand, within MPMX20_04480 at 4683.917 kb on + strand, within MPMX20_04480 at 4683.923 kb on - strand, within MPMX20_04480 at 4683.925 kb on - strand, within MPMX20_04480 at 4683.942 kb on + strand, within MPMX20_04480 at 4683.950 kb on - strand, within MPMX20_04480 at 4683.993 kb on - strand, within MPMX20_04480 at 4684.000 kb on + strand, within MPMX20_04480 at 4684.027 kb on + strand, within MPMX20_04480 at 4684.059 kb on - strand, within MPMX20_04480 at 4684.106 kb on + strand, within MPMX20_04480 at 4684.149 kb on - strand, within MPMX20_04480 at 4684.156 kb on + strand, within MPMX20_04480 at 4684.205 kb on - strand, within MPMX20_04480 at 4684.234 kb on - strand, within MPMX20_04480 at 4684.292 kb on + strand, within MPMX20_04480 at 4684.300 kb on - strand, within MPMX20_04480 at 4684.310 kb on - strand, within MPMX20_04480 at 4684.423 kb on - strand at 4684.430 kb on + strand at 4684.442 kb on + strand at 4684.490 kb on + strand at 4684.490 kb on + strand at 4684.490 kb on + strand at 4684.490 kb on + strand at 4684.490 kb on + strand at 4684.498 kb on - strand at 4684.498 kb on - strand at 4684.526 kb on + strand at 4684.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,682,819 + MPMX20_04479 0.49 +0.8 4,682,824 + MPMX20_04479 0.49 -1.3 4,682,824 + MPMX20_04479 0.49 -0.7 4,682,859 + MPMX20_04479 0.52 -0.4 4,682,859 + MPMX20_04479 0.52 +0.8 4,682,867 - MPMX20_04479 0.52 -0.9 4,682,882 - MPMX20_04479 0.54 +1.0 4,682,905 + MPMX20_04479 0.55 -1.5 4,682,908 - MPMX20_04479 0.55 +0.4 4,682,908 - MPMX20_04479 0.55 +0.3 4,682,908 - MPMX20_04479 0.55 -0.3 4,682,976 - MPMX20_04479 0.60 +3.2 4,683,107 + MPMX20_04479 0.70 -1.0 4,683,109 - MPMX20_04479 0.70 -0.6 4,683,115 - MPMX20_04479 0.70 -0.0 4,683,124 - MPMX20_04479 0.71 -0.4 4,683,178 - MPMX20_04479 0.75 +1.0 4,683,211 - MPMX20_04479 0.77 -0.6 4,683,228 + MPMX20_04479 0.78 -0.2 4,683,236 - MPMX20_04479 0.79 +0.0 4,683,256 - MPMX20_04479 0.81 -0.3 4,683,391 + -0.2 4,683,391 - -0.9 4,683,436 - -1.6 4,683,452 + +1.2 4,683,494 - +0.0 4,683,555 + -0.5 4,683,606 - +0.6 4,683,658 + -0.1 4,683,736 + -0.1 4,683,736 + +1.2 4,683,736 + +2.2 4,683,746 + +0.5 4,683,790 + -1.1 4,683,791 + -1.2 4,683,824 - MPMX20_04480 0.14 -2.4 4,683,850 + MPMX20_04480 0.17 -1.8 4,683,850 + MPMX20_04480 0.17 -1.4 4,683,850 + MPMX20_04480 0.17 +0.6 4,683,858 - MPMX20_04480 0.18 +0.2 4,683,870 + MPMX20_04480 0.20 -1.6 4,683,915 + MPMX20_04480 0.26 -0.8 4,683,917 + MPMX20_04480 0.26 -1.6 4,683,917 + MPMX20_04480 0.26 -0.5 4,683,923 - MPMX20_04480 0.27 +0.2 4,683,925 - MPMX20_04480 0.27 -1.7 4,683,942 + MPMX20_04480 0.30 +0.0 4,683,950 - MPMX20_04480 0.31 -0.4 4,683,993 - MPMX20_04480 0.36 -0.8 4,684,000 + MPMX20_04480 0.37 +0.6 4,684,027 + MPMX20_04480 0.41 -2.6 4,684,059 - MPMX20_04480 0.45 -0.2 4,684,106 + MPMX20_04480 0.52 +0.6 4,684,149 - MPMX20_04480 0.57 -1.3 4,684,156 + MPMX20_04480 0.58 -0.4 4,684,205 - MPMX20_04480 0.65 -1.4 4,684,234 - MPMX20_04480 0.69 -1.0 4,684,292 + MPMX20_04480 0.77 +2.2 4,684,300 - MPMX20_04480 0.78 +0.2 4,684,310 - MPMX20_04480 0.79 +1.2 4,684,423 - +0.3 4,684,430 + -1.1 4,684,442 + +2.2 4,684,490 + -0.3 4,684,490 + +0.8 4,684,490 + +0.9 4,684,490 + +1.5 4,684,490 + -0.3 4,684,498 - -0.6 4,684,498 - -2.4 4,684,526 + -0.8 4,684,534 - +2.2
Or see this region's nucleotide sequence