Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04301

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04299 and MPMX20_04300 are separated by 36 nucleotidesMPMX20_04300 and MPMX20_04301 are separated by 61 nucleotidesMPMX20_04301 and MPMX20_04302 are separated by 307 nucleotides MPMX20_04299: MPMX20_04299 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,484,475 to 4,485,248 _04299 MPMX20_04300: MPMX20_04300 - Putative ribose-phosphate pyrophosphokinase, at 4,485,285 to 4,485,968 _04300 MPMX20_04301: MPMX20_04301 - Fe/S biogenesis protein NfuA, at 4,486,030 to 4,486,605 _04301 MPMX20_04302: MPMX20_04302 - High-affinity gluconate transporter, at 4,486,913 to 4,488,229 _04302 Position (kb) 4486 4487Strain fitness (log2 ratio) -2 -1 0 1 2at 4485.039 kb on + strand, within MPMX20_04299at 4485.047 kb on - strand, within MPMX20_04299at 4485.179 kb on + strandat 4485.218 kb on + strandat 4485.218 kb on + strandat 4485.251 kb on - strandat 4485.284 kb on + strandat 4485.286 kb on + strandat 4485.294 kb on - strandat 4485.294 kb on - strandat 4485.324 kb on + strandat 4485.365 kb on - strand, within MPMX20_04300at 4485.519 kb on - strand, within MPMX20_04300at 4485.548 kb on + strand, within MPMX20_04300at 4485.554 kb on - strand, within MPMX20_04300at 4485.650 kb on - strand, within MPMX20_04300at 4485.736 kb on - strand, within MPMX20_04300at 4485.877 kb on + strand, within MPMX20_04300at 4485.885 kb on - strand, within MPMX20_04300at 4485.948 kb on + strandat 4485.961 kb on - strandat 4486.209 kb on + strand, within MPMX20_04301at 4486.209 kb on + strand, within MPMX20_04301at 4486.209 kb on + strand, within MPMX20_04301at 4486.209 kb on + strand, within MPMX20_04301at 4486.217 kb on - strand, within MPMX20_04301at 4486.217 kb on - strand, within MPMX20_04301at 4486.230 kb on + strand, within MPMX20_04301at 4486.266 kb on - strand, within MPMX20_04301at 4486.548 kb on + strandat 4486.556 kb on - strandat 4486.556 kb on - strandat 4486.556 kb on - strandat 4486.638 kb on - strandat 4486.674 kb on + strandat 4486.687 kb on - strandat 4486.762 kb on + strandat 4486.772 kb on + strandat 4486.938 kb on + strandat 4486.996 kb on + strandat 4487.004 kb on - strandat 4487.041 kb on + strandat 4487.049 kb on - strand, within MPMX20_04302at 4487.083 kb on + strand, within MPMX20_04302at 4487.091 kb on + strand, within MPMX20_04302at 4487.099 kb on - strand, within MPMX20_04302at 4487.099 kb on - strand, within MPMX20_04302at 4487.173 kb on - strand, within MPMX20_04302at 4487.248 kb on + strand, within MPMX20_04302at 4487.248 kb on + strand, within MPMX20_04302at 4487.256 kb on - strand, within MPMX20_04302at 4487.256 kb on - strand, within MPMX20_04302at 4487.256 kb on - strand, within MPMX20_04302at 4487.256 kb on - strand, within MPMX20_04302at 4487.256 kb on - strand, within MPMX20_04302at 4487.258 kb on - strand, within MPMX20_04302at 4487.285 kb on + strand, within MPMX20_04302at 4487.316 kb on - strand, within MPMX20_04302at 4487.320 kb on + strand, within MPMX20_04302at 4487.320 kb on + strand, within MPMX20_04302at 4487.320 kb on + strand, within MPMX20_04302at 4487.341 kb on - strand, within MPMX20_04302at 4487.410 kb on + strand, within MPMX20_04302at 4487.425 kb on + strand, within MPMX20_04302at 4487.425 kb on + strand, within MPMX20_04302at 4487.425 kb on + strand, within MPMX20_04302at 4487.425 kb on + strand, within MPMX20_04302at 4487.531 kb on + strand, within MPMX20_04302at 4487.531 kb on + strand, within MPMX20_04302at 4487.531 kb on + strand, within MPMX20_04302at 4487.531 kb on + strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302at 4487.539 kb on - strand, within MPMX20_04302

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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4,485,039 + MPMX20_04299 0.73 +0.5
4,485,047 - MPMX20_04299 0.74 +1.1
4,485,179 + -0.2
4,485,218 + +0.6
4,485,218 + -0.6
4,485,251 - -0.6
4,485,284 + +1.1
4,485,286 + -0.8
4,485,294 - +2.2
4,485,294 - -1.2
4,485,324 + -0.3
4,485,365 - MPMX20_04300 0.12 -0.6
4,485,519 - MPMX20_04300 0.34 -0.4
4,485,548 + MPMX20_04300 0.38 -1.8
4,485,554 - MPMX20_04300 0.39 -0.6
4,485,650 - MPMX20_04300 0.53 +0.9
4,485,736 - MPMX20_04300 0.66 -2.1
4,485,877 + MPMX20_04300 0.87 +2.6
4,485,885 - MPMX20_04300 0.88 -1.1
4,485,948 + +1.1
4,485,961 - +0.4
4,486,209 + MPMX20_04301 0.31 -2.4
4,486,209 + MPMX20_04301 0.31 +1.2
4,486,209 + MPMX20_04301 0.31 -0.1
4,486,209 + MPMX20_04301 0.31 +0.9
4,486,217 - MPMX20_04301 0.32 -0.4
4,486,217 - MPMX20_04301 0.32 -1.1
4,486,230 + MPMX20_04301 0.35 -2.2
4,486,266 - MPMX20_04301 0.41 -0.8
4,486,548 + -0.6
4,486,556 - -0.9
4,486,556 - -0.2
4,486,556 - -1.2
4,486,638 - +0.2
4,486,674 + -1.1
4,486,687 - +2.0
4,486,762 + -1.2
4,486,772 + +0.3
4,486,938 + +0.1
4,486,996 + -0.4
4,487,004 - +0.1
4,487,041 + +0.2
4,487,049 - MPMX20_04302 0.10 +0.1
4,487,083 + MPMX20_04302 0.13 +0.4
4,487,091 + MPMX20_04302 0.14 -0.1
4,487,099 - MPMX20_04302 0.14 +2.2
4,487,099 - MPMX20_04302 0.14 -0.1
4,487,173 - MPMX20_04302 0.20 +1.4
4,487,248 + MPMX20_04302 0.25 -0.9
4,487,248 + MPMX20_04302 0.25 +1.2
4,487,256 - MPMX20_04302 0.26 -0.7
4,487,256 - MPMX20_04302 0.26 -0.1
4,487,256 - MPMX20_04302 0.26 -1.6
4,487,256 - MPMX20_04302 0.26 -0.1
4,487,256 - MPMX20_04302 0.26 -1.0
4,487,258 - MPMX20_04302 0.26 +0.1
4,487,285 + MPMX20_04302 0.28 -1.7
4,487,316 - MPMX20_04302 0.31 -1.4
4,487,320 + MPMX20_04302 0.31 +0.8
4,487,320 + MPMX20_04302 0.31 +0.7
4,487,320 + MPMX20_04302 0.31 -1.6
4,487,341 - MPMX20_04302 0.32 -1.1
4,487,410 + MPMX20_04302 0.38 +0.0
4,487,425 + MPMX20_04302 0.39 -0.4
4,487,425 + MPMX20_04302 0.39 +1.2
4,487,425 + MPMX20_04302 0.39 -0.7
4,487,425 + MPMX20_04302 0.39 -1.4
4,487,531 + MPMX20_04302 0.47 -0.4
4,487,531 + MPMX20_04302 0.47 -1.0
4,487,531 + MPMX20_04302 0.47 +0.3
4,487,531 + MPMX20_04302 0.47 -1.0
4,487,539 - MPMX20_04302 0.48 -0.2
4,487,539 - MPMX20_04302 0.48 -1.5
4,487,539 - MPMX20_04302 0.48 +2.2
4,487,539 - MPMX20_04302 0.48 -0.8
4,487,539 - MPMX20_04302 0.48 +1.1
4,487,539 - MPMX20_04302 0.48 +0.7
4,487,539 - MPMX20_04302 0.48 -0.1
4,487,539 - MPMX20_04302 0.48 -0.7
4,487,539 - MPMX20_04302 0.48 +0.1

Or see this region's nucleotide sequence