Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04234 and MPMX20_04235 are separated by 96 nucleotides MPMX20_04235 and MPMX20_04236 are separated by 124 nucleotides MPMX20_04236 and MPMX20_04237 are separated by 7 nucleotides MPMX20_04237 and MPMX20_04238 overlap by 1 nucleotides MPMX20_04238 and MPMX20_04239 overlap by 1 nucleotides
MPMX20_04234: MPMX20_04234 - 30S ribosomal protein S7, at 4,421,229 to 4,421,699
_04234
MPMX20_04235: MPMX20_04235 - 30S ribosomal protein S12, at 4,421,796 to 4,422,170
_04235
MPMX20_04236: MPMX20_04236 - Protein TusB, at 4,422,295 to 4,422,582
_04236
MPMX20_04237: MPMX20_04237 - Protein TusC, at 4,422,590 to 4,422,949
_04237
MPMX20_04238: MPMX20_04238 - Sulfurtransferase TusD, at 4,422,949 to 4,423,335
_04238
MPMX20_04239: MPMX20_04239 - Transcriptional regulator DauR, at 4,423,335 to 4,424,057
_04239
Position (kb)
4422
4423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4422.585 kb on - strand at 4423.391 kb on - strand at 4423.527 kb on - strand, within MPMX20_04239 at 4423.541 kb on + strand, within MPMX20_04239 at 4423.682 kb on - strand, within MPMX20_04239 at 4423.770 kb on - strand, within MPMX20_04239 at 4423.819 kb on - strand, within MPMX20_04239 at 4423.891 kb on - strand, within MPMX20_04239 at 4423.891 kb on - strand, within MPMX20_04239 at 4423.892 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239 at 4423.945 kb on - strand, within MPMX20_04239
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,422,585 - +0.5 4,423,391 - -0.4 4,423,527 - MPMX20_04239 0.27 +0.7 4,423,541 + MPMX20_04239 0.28 +0.2 4,423,682 - MPMX20_04239 0.48 -1.5 4,423,770 - MPMX20_04239 0.60 -2.2 4,423,819 - MPMX20_04239 0.67 -0.2 4,423,891 - MPMX20_04239 0.77 +1.4 4,423,891 - MPMX20_04239 0.77 -1.6 4,423,892 - MPMX20_04239 0.77 +1.8 4,423,945 - MPMX20_04239 0.84 -1.7 4,423,945 - MPMX20_04239 0.84 -0.0 4,423,945 - MPMX20_04239 0.84 -0.4 4,423,945 - MPMX20_04239 0.84 +0.9 4,423,945 - MPMX20_04239 0.84 -0.2 4,423,945 - MPMX20_04239 0.84 -0.6
Or see this region's nucleotide sequence