Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04139 and MPMX20_04140 are separated by 84 nucleotides MPMX20_04140 and MPMX20_04141 are separated by 397 nucleotides
MPMX20_04139: MPMX20_04139 - Serine endoprotease DegS, at 4,339,309 to 4,340,376
_04139
MPMX20_04140: MPMX20_04140 - Malate dehydrogenase, at 4,340,461 to 4,341,399
_04140
MPMX20_04141: MPMX20_04141 - Arginine repressor, at 4,341,797 to 4,342,267
_04141
Position (kb)
4340
4341
4342 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4340.370 kb on + strand at 4340.694 kb on + strand, within MPMX20_04140 at 4340.694 kb on + strand, within MPMX20_04140 at 4340.702 kb on - strand, within MPMX20_04140 at 4340.702 kb on - strand, within MPMX20_04140 at 4340.727 kb on + strand, within MPMX20_04140 at 4340.814 kb on + strand, within MPMX20_04140 at 4340.857 kb on + strand, within MPMX20_04140 at 4341.110 kb on + strand, within MPMX20_04140 at 4341.122 kb on + strand, within MPMX20_04140 at 4341.122 kb on + strand, within MPMX20_04140 at 4341.130 kb on - strand, within MPMX20_04140 at 4341.132 kb on + strand, within MPMX20_04140 at 4341.132 kb on + strand, within MPMX20_04140 at 4341.132 kb on + strand, within MPMX20_04140 at 4341.132 kb on + strand, within MPMX20_04140 at 4341.140 kb on - strand, within MPMX20_04140 at 4341.140 kb on - strand, within MPMX20_04140 at 4341.140 kb on - strand, within MPMX20_04140 at 4341.140 kb on - strand, within MPMX20_04140 at 4341.150 kb on - strand, within MPMX20_04140 at 4341.175 kb on + strand, within MPMX20_04140 at 4341.183 kb on - strand, within MPMX20_04140 at 4341.194 kb on - strand, within MPMX20_04140 at 4341.204 kb on - strand, within MPMX20_04140 at 4341.204 kb on - strand, within MPMX20_04140 at 4341.256 kb on - strand, within MPMX20_04140 at 4341.264 kb on + strand, within MPMX20_04140 at 4341.276 kb on + strand, within MPMX20_04140 at 4341.276 kb on + strand, within MPMX20_04140 at 4341.276 kb on + strand, within MPMX20_04140 at 4341.276 kb on + strand, within MPMX20_04140 at 4341.278 kb on + strand, within MPMX20_04140 at 4341.284 kb on - strand, within MPMX20_04140 at 4341.284 kb on - strand, within MPMX20_04140 at 4341.284 kb on - strand, within MPMX20_04140 at 4341.294 kb on - strand, within MPMX20_04140 at 4341.296 kb on + strand, within MPMX20_04140 at 4341.312 kb on + strand at 4341.320 kb on - strand at 4341.327 kb on - strand at 4341.363 kb on - strand at 4341.367 kb on + strand at 4341.368 kb on - strand at 4341.375 kb on - strand at 4341.377 kb on + strand at 4341.377 kb on + strand at 4341.377 kb on + strand at 4341.385 kb on - strand at 4341.387 kb on - strand at 4341.432 kb on + strand at 4341.448 kb on - strand at 4341.532 kb on - strand at 4341.532 kb on - strand at 4341.532 kb on - strand at 4341.532 kb on - strand at 4341.532 kb on - strand at 4341.532 kb on - strand at 4341.535 kb on + strand at 4341.580 kb on - strand at 4341.597 kb on - strand at 4341.625 kb on + strand at 4341.645 kb on + strand at 4341.649 kb on + strand at 4341.855 kb on - strand, within MPMX20_04141 at 4341.884 kb on + strand, within MPMX20_04141 at 4341.899 kb on - strand, within MPMX20_04141 at 4341.913 kb on - strand, within MPMX20_04141 at 4341.970 kb on - strand, within MPMX20_04141 at 4342.005 kb on + strand, within MPMX20_04141 at 4342.029 kb on + strand, within MPMX20_04141 at 4342.029 kb on + strand, within MPMX20_04141 at 4342.082 kb on + strand, within MPMX20_04141 at 4342.090 kb on - strand, within MPMX20_04141 at 4342.107 kb on + strand, within MPMX20_04141 at 4342.141 kb on + strand, within MPMX20_04141 at 4342.141 kb on + strand, within MPMX20_04141 at 4342.147 kb on + strand, within MPMX20_04141 at 4342.147 kb on + strand, within MPMX20_04141 at 4342.147 kb on + strand, within MPMX20_04141 at 4342.147 kb on + strand, within MPMX20_04141 at 4342.155 kb on - strand, within MPMX20_04141 at 4342.155 kb on - strand, within MPMX20_04141 at 4342.246 kb on - strand at 4342.264 kb on + strand at 4342.308 kb on - strand at 4342.327 kb on + strand at 4342.335 kb on - strand at 4342.335 kb on - strand at 4342.335 kb on - strand at 4342.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,340,370 + -1.8 4,340,694 + MPMX20_04140 0.25 -1.1 4,340,694 + MPMX20_04140 0.25 -1.5 4,340,702 - MPMX20_04140 0.26 +0.7 4,340,702 - MPMX20_04140 0.26 -2.3 4,340,727 + MPMX20_04140 0.28 -1.2 4,340,814 + MPMX20_04140 0.38 -2.3 4,340,857 + MPMX20_04140 0.42 +2.2 4,341,110 + MPMX20_04140 0.69 +0.7 4,341,122 + MPMX20_04140 0.70 -0.6 4,341,122 + MPMX20_04140 0.70 +1.2 4,341,130 - MPMX20_04140 0.71 -1.6 4,341,132 + MPMX20_04140 0.71 -2.2 4,341,132 + MPMX20_04140 0.71 +0.7 4,341,132 + MPMX20_04140 0.71 +1.2 4,341,132 + MPMX20_04140 0.71 +0.7 4,341,140 - MPMX20_04140 0.72 -2.5 4,341,140 - MPMX20_04140 0.72 -2.0 4,341,140 - MPMX20_04140 0.72 -0.6 4,341,140 - MPMX20_04140 0.72 -2.5 4,341,150 - MPMX20_04140 0.73 -2.1 4,341,175 + MPMX20_04140 0.76 -1.1 4,341,183 - MPMX20_04140 0.77 -0.3 4,341,194 - MPMX20_04140 0.78 -1.3 4,341,204 - MPMX20_04140 0.79 -0.7 4,341,204 - MPMX20_04140 0.79 -1.8 4,341,256 - MPMX20_04140 0.85 -0.8 4,341,264 + MPMX20_04140 0.86 +0.2 4,341,276 + MPMX20_04140 0.87 -1.8 4,341,276 + MPMX20_04140 0.87 -1.1 4,341,276 + MPMX20_04140 0.87 -0.1 4,341,276 + MPMX20_04140 0.87 -2.3 4,341,278 + MPMX20_04140 0.87 -1.3 4,341,284 - MPMX20_04140 0.88 -0.3 4,341,284 - MPMX20_04140 0.88 -0.6 4,341,284 - MPMX20_04140 0.88 -1.8 4,341,294 - MPMX20_04140 0.89 -2.4 4,341,296 + MPMX20_04140 0.89 -2.0 4,341,312 + -1.7 4,341,320 - +2.2 4,341,327 - -0.8 4,341,363 - +2.2 4,341,367 + +1.2 4,341,368 - -2.4 4,341,375 - -0.8 4,341,377 + -0.9 4,341,377 + -1.1 4,341,377 + -0.3 4,341,385 - -0.8 4,341,387 - -2.0 4,341,432 + -0.8 4,341,448 - +0.7 4,341,532 - -1.1 4,341,532 - -1.5 4,341,532 - -1.1 4,341,532 - -0.3 4,341,532 - -0.9 4,341,532 - -0.6 4,341,535 + -0.9 4,341,580 - -1.2 4,341,597 - +1.2 4,341,625 + -0.5 4,341,645 + +0.3 4,341,649 + -0.2 4,341,855 - MPMX20_04141 0.12 -3.3 4,341,884 + MPMX20_04141 0.18 -2.2 4,341,899 - MPMX20_04141 0.22 -1.3 4,341,913 - MPMX20_04141 0.25 -1.3 4,341,970 - MPMX20_04141 0.37 -1.2 4,342,005 + MPMX20_04141 0.44 -0.3 4,342,029 + MPMX20_04141 0.49 -0.9 4,342,029 + MPMX20_04141 0.49 +1.2 4,342,082 + MPMX20_04141 0.61 -0.3 4,342,090 - MPMX20_04141 0.62 +0.4 4,342,107 + MPMX20_04141 0.66 -1.2 4,342,141 + MPMX20_04141 0.73 -1.8 4,342,141 + MPMX20_04141 0.73 +0.4 4,342,147 + MPMX20_04141 0.74 -1.3 4,342,147 + MPMX20_04141 0.74 -2.3 4,342,147 + MPMX20_04141 0.74 -1.1 4,342,147 + MPMX20_04141 0.74 -0.8 4,342,155 - MPMX20_04141 0.76 -2.0 4,342,155 - MPMX20_04141 0.76 -1.9 4,342,246 - -1.1 4,342,264 + -1.1 4,342,308 - +0.2 4,342,327 + +0.4 4,342,335 - +1.5 4,342,335 - -0.5 4,342,335 - -0.5 4,342,335 - -0.7
Or see this region's nucleotide sequence