Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04140

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04139 and MPMX20_04140 are separated by 84 nucleotidesMPMX20_04140 and MPMX20_04141 are separated by 397 nucleotides MPMX20_04139: MPMX20_04139 - Serine endoprotease DegS, at 4,339,309 to 4,340,376 _04139 MPMX20_04140: MPMX20_04140 - Malate dehydrogenase, at 4,340,461 to 4,341,399 _04140 MPMX20_04141: MPMX20_04141 - Arginine repressor, at 4,341,797 to 4,342,267 _04141 Position (kb) 4340 4341 4342Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4340.370 kb on + strandat 4340.694 kb on + strand, within MPMX20_04140at 4340.694 kb on + strand, within MPMX20_04140at 4340.702 kb on - strand, within MPMX20_04140at 4340.702 kb on - strand, within MPMX20_04140at 4340.727 kb on + strand, within MPMX20_04140at 4340.814 kb on + strand, within MPMX20_04140at 4340.857 kb on + strand, within MPMX20_04140at 4341.110 kb on + strand, within MPMX20_04140at 4341.122 kb on + strand, within MPMX20_04140at 4341.122 kb on + strand, within MPMX20_04140at 4341.130 kb on - strand, within MPMX20_04140at 4341.132 kb on + strand, within MPMX20_04140at 4341.132 kb on + strand, within MPMX20_04140at 4341.132 kb on + strand, within MPMX20_04140at 4341.132 kb on + strand, within MPMX20_04140at 4341.140 kb on - strand, within MPMX20_04140at 4341.140 kb on - strand, within MPMX20_04140at 4341.140 kb on - strand, within MPMX20_04140at 4341.140 kb on - strand, within MPMX20_04140at 4341.150 kb on - strand, within MPMX20_04140at 4341.175 kb on + strand, within MPMX20_04140at 4341.183 kb on - strand, within MPMX20_04140at 4341.194 kb on - strand, within MPMX20_04140at 4341.204 kb on - strand, within MPMX20_04140at 4341.204 kb on - strand, within MPMX20_04140at 4341.256 kb on - strand, within MPMX20_04140at 4341.264 kb on + strand, within MPMX20_04140at 4341.276 kb on + strand, within MPMX20_04140at 4341.276 kb on + strand, within MPMX20_04140at 4341.276 kb on + strand, within MPMX20_04140at 4341.276 kb on + strand, within MPMX20_04140at 4341.278 kb on + strand, within MPMX20_04140at 4341.284 kb on - strand, within MPMX20_04140at 4341.284 kb on - strand, within MPMX20_04140at 4341.284 kb on - strand, within MPMX20_04140at 4341.294 kb on - strand, within MPMX20_04140at 4341.296 kb on + strand, within MPMX20_04140at 4341.312 kb on + strandat 4341.320 kb on - strandat 4341.327 kb on - strandat 4341.363 kb on - strandat 4341.367 kb on + strandat 4341.368 kb on - strandat 4341.375 kb on - strandat 4341.377 kb on + strandat 4341.377 kb on + strandat 4341.377 kb on + strandat 4341.385 kb on - strandat 4341.387 kb on - strandat 4341.432 kb on + strandat 4341.448 kb on - strandat 4341.532 kb on - strandat 4341.532 kb on - strandat 4341.532 kb on - strandat 4341.532 kb on - strandat 4341.532 kb on - strandat 4341.532 kb on - strandat 4341.535 kb on + strandat 4341.580 kb on - strandat 4341.597 kb on - strandat 4341.625 kb on + strandat 4341.645 kb on + strandat 4341.649 kb on + strandat 4341.855 kb on - strand, within MPMX20_04141at 4341.884 kb on + strand, within MPMX20_04141at 4341.899 kb on - strand, within MPMX20_04141at 4341.913 kb on - strand, within MPMX20_04141at 4341.970 kb on - strand, within MPMX20_04141at 4342.005 kb on + strand, within MPMX20_04141at 4342.029 kb on + strand, within MPMX20_04141at 4342.029 kb on + strand, within MPMX20_04141at 4342.082 kb on + strand, within MPMX20_04141at 4342.090 kb on - strand, within MPMX20_04141at 4342.107 kb on + strand, within MPMX20_04141at 4342.141 kb on + strand, within MPMX20_04141at 4342.141 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.155 kb on - strand, within MPMX20_04141at 4342.155 kb on - strand, within MPMX20_04141at 4342.246 kb on - strandat 4342.264 kb on + strandat 4342.308 kb on - strandat 4342.327 kb on + strandat 4342.335 kb on - strandat 4342.335 kb on - strandat 4342.335 kb on - strandat 4342.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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4,340,370 + -1.8
4,340,694 + MPMX20_04140 0.25 -1.1
4,340,694 + MPMX20_04140 0.25 -1.5
4,340,702 - MPMX20_04140 0.26 +0.7
4,340,702 - MPMX20_04140 0.26 -2.3
4,340,727 + MPMX20_04140 0.28 -1.2
4,340,814 + MPMX20_04140 0.38 -2.3
4,340,857 + MPMX20_04140 0.42 +2.2
4,341,110 + MPMX20_04140 0.69 +0.7
4,341,122 + MPMX20_04140 0.70 -0.6
4,341,122 + MPMX20_04140 0.70 +1.2
4,341,130 - MPMX20_04140 0.71 -1.6
4,341,132 + MPMX20_04140 0.71 -2.2
4,341,132 + MPMX20_04140 0.71 +0.7
4,341,132 + MPMX20_04140 0.71 +1.2
4,341,132 + MPMX20_04140 0.71 +0.7
4,341,140 - MPMX20_04140 0.72 -2.5
4,341,140 - MPMX20_04140 0.72 -2.0
4,341,140 - MPMX20_04140 0.72 -0.6
4,341,140 - MPMX20_04140 0.72 -2.5
4,341,150 - MPMX20_04140 0.73 -2.1
4,341,175 + MPMX20_04140 0.76 -1.1
4,341,183 - MPMX20_04140 0.77 -0.3
4,341,194 - MPMX20_04140 0.78 -1.3
4,341,204 - MPMX20_04140 0.79 -0.7
4,341,204 - MPMX20_04140 0.79 -1.8
4,341,256 - MPMX20_04140 0.85 -0.8
4,341,264 + MPMX20_04140 0.86 +0.2
4,341,276 + MPMX20_04140 0.87 -1.8
4,341,276 + MPMX20_04140 0.87 -1.1
4,341,276 + MPMX20_04140 0.87 -0.1
4,341,276 + MPMX20_04140 0.87 -2.3
4,341,278 + MPMX20_04140 0.87 -1.3
4,341,284 - MPMX20_04140 0.88 -0.3
4,341,284 - MPMX20_04140 0.88 -0.6
4,341,284 - MPMX20_04140 0.88 -1.8
4,341,294 - MPMX20_04140 0.89 -2.4
4,341,296 + MPMX20_04140 0.89 -2.0
4,341,312 + -1.7
4,341,320 - +2.2
4,341,327 - -0.8
4,341,363 - +2.2
4,341,367 + +1.2
4,341,368 - -2.4
4,341,375 - -0.8
4,341,377 + -0.9
4,341,377 + -1.1
4,341,377 + -0.3
4,341,385 - -0.8
4,341,387 - -2.0
4,341,432 + -0.8
4,341,448 - +0.7
4,341,532 - -1.1
4,341,532 - -1.5
4,341,532 - -1.1
4,341,532 - -0.3
4,341,532 - -0.9
4,341,532 - -0.6
4,341,535 + -0.9
4,341,580 - -1.2
4,341,597 - +1.2
4,341,625 + -0.5
4,341,645 + +0.3
4,341,649 + -0.2
4,341,855 - MPMX20_04141 0.12 -3.3
4,341,884 + MPMX20_04141 0.18 -2.2
4,341,899 - MPMX20_04141 0.22 -1.3
4,341,913 - MPMX20_04141 0.25 -1.3
4,341,970 - MPMX20_04141 0.37 -1.2
4,342,005 + MPMX20_04141 0.44 -0.3
4,342,029 + MPMX20_04141 0.49 -0.9
4,342,029 + MPMX20_04141 0.49 +1.2
4,342,082 + MPMX20_04141 0.61 -0.3
4,342,090 - MPMX20_04141 0.62 +0.4
4,342,107 + MPMX20_04141 0.66 -1.2
4,342,141 + MPMX20_04141 0.73 -1.8
4,342,141 + MPMX20_04141 0.73 +0.4
4,342,147 + MPMX20_04141 0.74 -1.3
4,342,147 + MPMX20_04141 0.74 -2.3
4,342,147 + MPMX20_04141 0.74 -1.1
4,342,147 + MPMX20_04141 0.74 -0.8
4,342,155 - MPMX20_04141 0.76 -2.0
4,342,155 - MPMX20_04141 0.76 -1.9
4,342,246 - -1.1
4,342,264 + -1.1
4,342,308 - +0.2
4,342,327 + +0.4
4,342,335 - +1.5
4,342,335 - -0.5
4,342,335 - -0.5
4,342,335 - -0.7

Or see this region's nucleotide sequence