Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03858 and MPMX20_03859 are separated by 33 nucleotides MPMX20_03859 and MPMX20_03860 are separated by 59 nucleotides MPMX20_03860 and MPMX20_03861 are separated by 164 nucleotides
MPMX20_03858: MPMX20_03858 - Trk system potassium uptake protein TrkG, at 4,063,693 to 4,065,168
_03858
MPMX20_03859: MPMX20_03859 - Cell division protein FtsP, at 4,065,202 to 4,066,614
_03859
MPMX20_03860: MPMX20_03860 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 4,066,674 to 4,067,411
_03860
MPMX20_03861: MPMX20_03861 - DNA topoisomerase 4 subunit A, at 4,067,576 to 4,069,834
_03861
Position (kb)
4065
4066
4067 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4064.213 kb on + strand, within MPMX20_03858 at 4064.213 kb on + strand, within MPMX20_03858 at 4064.213 kb on + strand, within MPMX20_03858 at 4064.221 kb on - strand, within MPMX20_03858 at 4064.261 kb on - strand, within MPMX20_03858 at 4064.282 kb on - strand, within MPMX20_03858 at 4064.282 kb on - strand, within MPMX20_03858 at 4064.290 kb on - strand, within MPMX20_03858 at 4064.296 kb on + strand, within MPMX20_03858 at 4064.304 kb on - strand, within MPMX20_03858 at 4064.309 kb on - strand, within MPMX20_03858 at 4064.309 kb on - strand, within MPMX20_03858 at 4064.313 kb on + strand, within MPMX20_03858 at 4064.361 kb on + strand, within MPMX20_03858 at 4064.474 kb on + strand, within MPMX20_03858 at 4064.529 kb on - strand, within MPMX20_03858 at 4064.531 kb on + strand, within MPMX20_03858 at 4064.539 kb on - strand, within MPMX20_03858 at 4064.627 kb on + strand, within MPMX20_03858 at 4064.629 kb on - strand, within MPMX20_03858 at 4064.632 kb on + strand, within MPMX20_03858 at 4064.635 kb on - strand, within MPMX20_03858 at 4064.635 kb on - strand, within MPMX20_03858 at 4064.654 kb on + strand, within MPMX20_03858 at 4064.654 kb on + strand, within MPMX20_03858 at 4064.654 kb on + strand, within MPMX20_03858 at 4064.654 kb on + strand, within MPMX20_03858 at 4064.688 kb on + strand, within MPMX20_03858 at 4064.753 kb on + strand, within MPMX20_03858 at 4064.783 kb on - strand, within MPMX20_03858 at 4064.790 kb on - strand, within MPMX20_03858 at 4064.801 kb on + strand, within MPMX20_03858 at 4064.801 kb on + strand, within MPMX20_03858 at 4064.809 kb on - strand, within MPMX20_03858 at 4064.809 kb on - strand, within MPMX20_03858 at 4064.809 kb on - strand, within MPMX20_03858 at 4064.821 kb on - strand, within MPMX20_03858 at 4064.821 kb on - strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.858 kb on + strand, within MPMX20_03858 at 4064.866 kb on - strand, within MPMX20_03858 at 4064.866 kb on - strand, within MPMX20_03858 at 4064.866 kb on - strand, within MPMX20_03858 at 4064.866 kb on - strand, within MPMX20_03858 at 4064.866 kb on - strand, within MPMX20_03858 at 4064.866 kb on - strand, within MPMX20_03858 at 4064.883 kb on + strand, within MPMX20_03858 at 4064.905 kb on + strand, within MPMX20_03858 at 4064.905 kb on + strand, within MPMX20_03858 at 4064.913 kb on - strand, within MPMX20_03858 at 4064.913 kb on - strand, within MPMX20_03858 at 4064.913 kb on - strand, within MPMX20_03858 at 4064.972 kb on + strand, within MPMX20_03858 at 4064.980 kb on - strand, within MPMX20_03858 at 4064.990 kb on - strand, within MPMX20_03858 at 4064.990 kb on - strand, within MPMX20_03858 at 4065.033 kb on - strand at 4065.090 kb on - strand at 4065.090 kb on - strand at 4065.090 kb on - strand at 4065.092 kb on - strand at 4065.207 kb on - strand at 4065.220 kb on - strand at 4065.301 kb on - strand at 4065.303 kb on + strand at 4065.311 kb on - strand at 4065.386 kb on + strand, within MPMX20_03859 at 4065.440 kb on - strand, within MPMX20_03859 at 4065.463 kb on - strand, within MPMX20_03859 at 4065.473 kb on - strand, within MPMX20_03859 at 4065.507 kb on - strand, within MPMX20_03859 at 4065.564 kb on + strand, within MPMX20_03859 at 4065.633 kb on + strand, within MPMX20_03859 at 4065.638 kb on + strand, within MPMX20_03859 at 4065.654 kb on + strand, within MPMX20_03859 at 4065.654 kb on + strand, within MPMX20_03859 at 4065.657 kb on + strand, within MPMX20_03859 at 4065.675 kb on - strand, within MPMX20_03859 at 4065.677 kb on - strand, within MPMX20_03859 at 4065.716 kb on - strand, within MPMX20_03859 at 4065.744 kb on + strand, within MPMX20_03859 at 4065.752 kb on - strand, within MPMX20_03859 at 4065.815 kb on - strand, within MPMX20_03859 at 4065.843 kb on - strand, within MPMX20_03859 at 4065.900 kb on + strand, within MPMX20_03859 at 4065.900 kb on + strand, within MPMX20_03859 at 4065.908 kb on - strand, within MPMX20_03859 at 4065.908 kb on - strand, within MPMX20_03859 at 4065.908 kb on - strand, within MPMX20_03859 at 4065.968 kb on + strand, within MPMX20_03859 at 4066.004 kb on - strand, within MPMX20_03859 at 4066.020 kb on + strand, within MPMX20_03859 at 4066.047 kb on - strand, within MPMX20_03859 at 4066.090 kb on - strand, within MPMX20_03859 at 4066.158 kb on - strand, within MPMX20_03859 at 4066.158 kb on - strand, within MPMX20_03859 at 4066.159 kb on + strand, within MPMX20_03859 at 4066.166 kb on + strand, within MPMX20_03859 at 4066.174 kb on - strand, within MPMX20_03859 at 4066.293 kb on + strand, within MPMX20_03859 at 4066.293 kb on + strand, within MPMX20_03859 at 4066.301 kb on - strand, within MPMX20_03859 at 4066.348 kb on - strand, within MPMX20_03859 at 4066.350 kb on + strand, within MPMX20_03859 at 4066.350 kb on + strand, within MPMX20_03859 at 4066.358 kb on - strand, within MPMX20_03859 at 4066.358 kb on - strand, within MPMX20_03859 at 4066.382 kb on - strand, within MPMX20_03859 at 4066.384 kb on - strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.386 kb on + strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.394 kb on - strand, within MPMX20_03859 at 4066.409 kb on + strand, within MPMX20_03859 at 4066.419 kb on + strand, within MPMX20_03859 at 4066.429 kb on + strand, within MPMX20_03859 at 4066.434 kb on + strand, within MPMX20_03859 at 4066.442 kb on - strand, within MPMX20_03859 at 4066.519 kb on - strand at 4066.552 kb on - strand at 4066.590 kb on - strand at 4066.612 kb on + strand at 4066.612 kb on + strand at 4066.672 kb on + strand at 4066.672 kb on + strand at 4067.439 kb on + strand at 4067.447 kb on - strand at 4067.447 kb on - strand at 4067.447 kb on - strand at 4067.470 kb on - strand at 4067.470 kb on - strand at 4067.470 kb on - strand at 4067.548 kb on + strand at 4067.553 kb on + strand at 4067.560 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.573 kb on + strand at 4067.581 kb on - strand at 4067.581 kb on - strand at 4067.581 kb on - strand at 4067.581 kb on - strand at 4067.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,064,213 + MPMX20_03858 0.35 -0.2 4,064,213 + MPMX20_03858 0.35 +2.0 4,064,213 + MPMX20_03858 0.35 -0.2 4,064,221 - MPMX20_03858 0.36 +1.2 4,064,261 - MPMX20_03858 0.38 +0.2 4,064,282 - MPMX20_03858 0.40 -0.6 4,064,282 - MPMX20_03858 0.40 +0.4 4,064,290 - MPMX20_03858 0.40 -0.9 4,064,296 + MPMX20_03858 0.41 +0.3 4,064,304 - MPMX20_03858 0.41 +0.4 4,064,309 - MPMX20_03858 0.42 -2.8 4,064,309 - MPMX20_03858 0.42 -1.9 4,064,313 + MPMX20_03858 0.42 -0.1 4,064,361 + MPMX20_03858 0.45 +2.2 4,064,474 + MPMX20_03858 0.53 +0.2 4,064,529 - MPMX20_03858 0.57 -0.4 4,064,531 + MPMX20_03858 0.57 +0.1 4,064,539 - MPMX20_03858 0.57 -0.4 4,064,627 + MPMX20_03858 0.63 -0.6 4,064,629 - MPMX20_03858 0.63 -0.5 4,064,632 + MPMX20_03858 0.64 -0.0 4,064,635 - MPMX20_03858 0.64 +0.2 4,064,635 - MPMX20_03858 0.64 +0.4 4,064,654 + MPMX20_03858 0.65 +0.8 4,064,654 + MPMX20_03858 0.65 +0.2 4,064,654 + MPMX20_03858 0.65 +0.4 4,064,654 + MPMX20_03858 0.65 -2.4 4,064,688 + MPMX20_03858 0.67 +0.6 4,064,753 + MPMX20_03858 0.72 +0.6 4,064,783 - MPMX20_03858 0.74 +0.5 4,064,790 - MPMX20_03858 0.74 +0.2 4,064,801 + MPMX20_03858 0.75 +0.4 4,064,801 + MPMX20_03858 0.75 +0.2 4,064,809 - MPMX20_03858 0.76 -1.4 4,064,809 - MPMX20_03858 0.76 +0.1 4,064,809 - MPMX20_03858 0.76 +0.4 4,064,821 - MPMX20_03858 0.76 -0.2 4,064,821 - MPMX20_03858 0.76 -0.8 4,064,858 + MPMX20_03858 0.79 -0.2 4,064,858 + MPMX20_03858 0.79 -1.5 4,064,858 + MPMX20_03858 0.79 -0.1 4,064,858 + MPMX20_03858 0.79 -0.5 4,064,858 + MPMX20_03858 0.79 +0.4 4,064,858 + MPMX20_03858 0.79 +0.3 4,064,858 + MPMX20_03858 0.79 +0.7 4,064,866 - MPMX20_03858 0.79 -0.8 4,064,866 - MPMX20_03858 0.79 -0.2 4,064,866 - MPMX20_03858 0.79 +2.6 4,064,866 - MPMX20_03858 0.79 +0.5 4,064,866 - MPMX20_03858 0.79 -0.7 4,064,866 - MPMX20_03858 0.79 -0.6 4,064,883 + MPMX20_03858 0.81 -0.7 4,064,905 + MPMX20_03858 0.82 -0.4 4,064,905 + MPMX20_03858 0.82 -0.4 4,064,913 - MPMX20_03858 0.83 -0.4 4,064,913 - MPMX20_03858 0.83 -1.2 4,064,913 - MPMX20_03858 0.83 -0.4 4,064,972 + MPMX20_03858 0.87 +0.4 4,064,980 - MPMX20_03858 0.87 -1.1 4,064,990 - MPMX20_03858 0.88 +0.2 4,064,990 - MPMX20_03858 0.88 -0.9 4,065,033 - -0.1 4,065,090 - +1.6 4,065,090 - +0.2 4,065,090 - -1.1 4,065,092 - -0.4 4,065,207 - +0.5 4,065,220 - -0.7 4,065,301 - -1.7 4,065,303 + -0.6 4,065,311 - -0.2 4,065,386 + MPMX20_03859 0.13 -0.8 4,065,440 - MPMX20_03859 0.17 -0.4 4,065,463 - MPMX20_03859 0.18 -0.3 4,065,473 - MPMX20_03859 0.19 +0.7 4,065,507 - MPMX20_03859 0.22 -0.6 4,065,564 + MPMX20_03859 0.26 +3.5 4,065,633 + MPMX20_03859 0.31 +0.4 4,065,638 + MPMX20_03859 0.31 +0.2 4,065,654 + MPMX20_03859 0.32 +1.2 4,065,654 + MPMX20_03859 0.32 +1.2 4,065,657 + MPMX20_03859 0.32 -0.2 4,065,675 - MPMX20_03859 0.33 +0.9 4,065,677 - MPMX20_03859 0.34 +2.0 4,065,716 - MPMX20_03859 0.36 -0.2 4,065,744 + MPMX20_03859 0.38 -1.1 4,065,752 - MPMX20_03859 0.39 +1.0 4,065,815 - MPMX20_03859 0.43 -0.9 4,065,843 - MPMX20_03859 0.45 -1.5 4,065,900 + MPMX20_03859 0.49 +0.8 4,065,900 + MPMX20_03859 0.49 +3.8 4,065,908 - MPMX20_03859 0.50 +0.3 4,065,908 - MPMX20_03859 0.50 +1.5 4,065,908 - MPMX20_03859 0.50 -0.2 4,065,968 + MPMX20_03859 0.54 -0.9 4,066,004 - MPMX20_03859 0.57 +0.6 4,066,020 + MPMX20_03859 0.58 -0.5 4,066,047 - MPMX20_03859 0.60 +0.0 4,066,090 - MPMX20_03859 0.63 -0.2 4,066,158 - MPMX20_03859 0.68 -0.7 4,066,158 - MPMX20_03859 0.68 +1.6 4,066,159 + MPMX20_03859 0.68 +4.6 4,066,166 + MPMX20_03859 0.68 -0.3 4,066,174 - MPMX20_03859 0.69 +0.0 4,066,293 + MPMX20_03859 0.77 -1.3 4,066,293 + MPMX20_03859 0.77 +0.3 4,066,301 - MPMX20_03859 0.78 -0.1 4,066,348 - MPMX20_03859 0.81 -1.2 4,066,350 + MPMX20_03859 0.81 -1.2 4,066,350 + MPMX20_03859 0.81 +1.2 4,066,358 - MPMX20_03859 0.82 -0.5 4,066,358 - MPMX20_03859 0.82 -0.9 4,066,382 - MPMX20_03859 0.84 -1.1 4,066,384 - MPMX20_03859 0.84 -1.2 4,066,386 + MPMX20_03859 0.84 -0.1 4,066,386 + MPMX20_03859 0.84 -0.4 4,066,386 + MPMX20_03859 0.84 +2.2 4,066,386 + MPMX20_03859 0.84 -0.3 4,066,386 + MPMX20_03859 0.84 -1.6 4,066,386 + MPMX20_03859 0.84 -0.4 4,066,386 + MPMX20_03859 0.84 +0.1 4,066,386 + MPMX20_03859 0.84 +2.2 4,066,394 - MPMX20_03859 0.84 +0.5 4,066,394 - MPMX20_03859 0.84 +0.0 4,066,394 - MPMX20_03859 0.84 -2.5 4,066,394 - MPMX20_03859 0.84 -0.2 4,066,394 - MPMX20_03859 0.84 -2.7 4,066,394 - MPMX20_03859 0.84 -1.4 4,066,394 - MPMX20_03859 0.84 -0.4 4,066,409 + MPMX20_03859 0.85 -1.5 4,066,419 + MPMX20_03859 0.86 +0.7 4,066,429 + MPMX20_03859 0.87 +0.8 4,066,434 + MPMX20_03859 0.87 -0.1 4,066,442 - MPMX20_03859 0.88 -0.8 4,066,519 - -1.3 4,066,552 - +0.9 4,066,590 - -0.4 4,066,612 + +0.3 4,066,612 + +2.2 4,066,672 + -0.9 4,066,672 + +0.0 4,067,439 + -0.1 4,067,447 - -0.4 4,067,447 - -2.1 4,067,447 - -1.5 4,067,470 - -0.9 4,067,470 - +0.2 4,067,470 - +0.2 4,067,548 + +0.6 4,067,553 + -0.0 4,067,560 + +0.6 4,067,573 + +0.2 4,067,573 + +0.6 4,067,573 + -0.1 4,067,573 + +0.5 4,067,573 + -0.1 4,067,573 + +0.6 4,067,573 + +0.9 4,067,573 + +2.2 4,067,581 - -1.7 4,067,581 - +0.3 4,067,581 - -1.6 4,067,581 - -0.5 4,067,586 - -1.6
Or see this region's nucleotide sequence