Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03756

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03754 and MPMX20_03755 are separated by 6 nucleotidesMPMX20_03755 and MPMX20_03756 overlap by 20 nucleotidesMPMX20_03756 and MPMX20_03757 are separated by 294 nucleotides MPMX20_03754: MPMX20_03754 - Flavodoxin 2, at 3,956,628 to 3,957,149 _03754 MPMX20_03755: MPMX20_03755 - Inner membrane protein YgfX, at 3,957,156 to 3,957,566 _03755 MPMX20_03756: MPMX20_03756 - FAD assembly factor SdhE, at 3,957,547 to 3,957,813 _03756 MPMX20_03757: MPMX20_03757 - tRNA-modifying protein YgfZ, at 3,958,108 to 3,959,088 _03757 Position (kb) 3957 3958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3956.578 kb on + strandat 3956.580 kb on + strandat 3956.588 kb on - strandat 3956.614 kb on - strandat 3956.632 kb on + strandat 3956.637 kb on + strandat 3956.640 kb on - strandat 3956.642 kb on + strandat 3956.642 kb on + strandat 3956.642 kb on + strandat 3956.642 kb on + strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.650 kb on - strandat 3956.668 kb on - strandat 3956.704 kb on + strand, within MPMX20_03754at 3956.712 kb on - strand, within MPMX20_03754at 3956.729 kb on + strand, within MPMX20_03754at 3956.743 kb on + strand, within MPMX20_03754at 3956.777 kb on - strand, within MPMX20_03754at 3956.830 kb on + strand, within MPMX20_03754at 3956.834 kb on - strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.900 kb on + strand, within MPMX20_03754at 3956.970 kb on - strand, within MPMX20_03754at 3956.988 kb on + strand, within MPMX20_03754at 3957.059 kb on + strand, within MPMX20_03754at 3957.062 kb on - strand, within MPMX20_03754at 3957.130 kb on + strandat 3957.208 kb on + strand, within MPMX20_03755at 3957.211 kb on - strand, within MPMX20_03755at 3957.212 kb on + strand, within MPMX20_03755at 3957.214 kb on + strand, within MPMX20_03755at 3957.216 kb on - strand, within MPMX20_03755at 3957.216 kb on - strand, within MPMX20_03755at 3957.230 kb on - strand, within MPMX20_03755at 3957.230 kb on - strand, within MPMX20_03755at 3957.237 kb on - strand, within MPMX20_03755at 3957.306 kb on - strand, within MPMX20_03755at 3957.411 kb on + strand, within MPMX20_03755at 3957.427 kb on - strand, within MPMX20_03755at 3957.459 kb on - strand, within MPMX20_03755at 3957.472 kb on - strand, within MPMX20_03755at 3957.476 kb on + strand, within MPMX20_03755at 3957.480 kb on + strand, within MPMX20_03755at 3957.494 kb on - strand, within MPMX20_03755at 3957.514 kb on + strand, within MPMX20_03755at 3957.553 kb on - strandat 3957.631 kb on - strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.668 kb on + strand, within MPMX20_03756at 3957.676 kb on - strand, within MPMX20_03756at 3957.686 kb on + strand, within MPMX20_03756at 3957.702 kb on - strand, within MPMX20_03756at 3957.715 kb on + strand, within MPMX20_03756at 3957.723 kb on - strand, within MPMX20_03756at 3957.843 kb on + strandat 3957.900 kb on - strandat 3957.900 kb on - strandat 3957.935 kb on + strandat 3957.935 kb on + strandat 3957.974 kb on + strandat 3957.984 kb on + strandat 3958.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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3,956,578 + -0.4
3,956,580 + -1.0
3,956,588 - -0.1
3,956,614 - -0.6
3,956,632 + +3.2
3,956,637 + -0.1
3,956,640 - -1.5
3,956,642 + -1.3
3,956,642 + +1.0
3,956,642 + -0.3
3,956,642 + -0.8
3,956,650 - -0.7
3,956,650 - -0.1
3,956,650 - +1.2
3,956,650 - -0.9
3,956,650 - -1.8
3,956,668 - -1.6
3,956,704 + MPMX20_03754 0.15 +0.6
3,956,712 - MPMX20_03754 0.16 +1.2
3,956,729 + MPMX20_03754 0.19 -2.1
3,956,743 + MPMX20_03754 0.22 -0.6
3,956,777 - MPMX20_03754 0.29 +0.2
3,956,830 + MPMX20_03754 0.39 +0.9
3,956,834 - MPMX20_03754 0.39 +1.6
3,956,900 + MPMX20_03754 0.52 +0.9
3,956,900 + MPMX20_03754 0.52 +3.2
3,956,900 + MPMX20_03754 0.52 -0.2
3,956,900 + MPMX20_03754 0.52 +0.8
3,956,970 - MPMX20_03754 0.66 -1.9
3,956,988 + MPMX20_03754 0.69 +0.2
3,957,059 + MPMX20_03754 0.83 +1.5
3,957,062 - MPMX20_03754 0.83 +1.2
3,957,130 + -1.2
3,957,208 + MPMX20_03755 0.13 +0.6
3,957,211 - MPMX20_03755 0.13 -1.6
3,957,212 + MPMX20_03755 0.14 -0.5
3,957,214 + MPMX20_03755 0.14 -1.4
3,957,216 - MPMX20_03755 0.15 -2.1
3,957,216 - MPMX20_03755 0.15 -0.1
3,957,230 - MPMX20_03755 0.18 +1.8
3,957,230 - MPMX20_03755 0.18 -1.3
3,957,237 - MPMX20_03755 0.20 -0.7
3,957,306 - MPMX20_03755 0.36 -0.1
3,957,411 + MPMX20_03755 0.62 -1.3
3,957,427 - MPMX20_03755 0.66 -1.2
3,957,459 - MPMX20_03755 0.74 +0.3
3,957,472 - MPMX20_03755 0.77 +0.0
3,957,476 + MPMX20_03755 0.78 -0.0
3,957,480 + MPMX20_03755 0.79 -0.8
3,957,494 - MPMX20_03755 0.82 -1.6
3,957,514 + MPMX20_03755 0.87 -1.6
3,957,553 - +0.6
3,957,631 - MPMX20_03756 0.31 -1.9
3,957,668 + MPMX20_03756 0.45 -1.5
3,957,668 + MPMX20_03756 0.45 -3.0
3,957,668 + MPMX20_03756 0.45 -2.3
3,957,668 + MPMX20_03756 0.45 -1.8
3,957,676 - MPMX20_03756 0.48 +0.6
3,957,686 + MPMX20_03756 0.52 -0.5
3,957,702 - MPMX20_03756 0.58 -0.4
3,957,715 + MPMX20_03756 0.63 -2.7
3,957,723 - MPMX20_03756 0.66 -2.1
3,957,843 + +1.0
3,957,900 - -0.2
3,957,900 - -0.1
3,957,935 + -1.0
3,957,935 + +0.3
3,957,974 + -0.5
3,957,984 + -0.0
3,958,038 - +2.2

Or see this region's nucleotide sequence