Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03754 and MPMX20_03755 are separated by 6 nucleotides MPMX20_03755 and MPMX20_03756 overlap by 20 nucleotides MPMX20_03756 and MPMX20_03757 are separated by 294 nucleotides
MPMX20_03754: MPMX20_03754 - Flavodoxin 2, at 3,956,628 to 3,957,149
_03754
MPMX20_03755: MPMX20_03755 - Inner membrane protein YgfX, at 3,957,156 to 3,957,566
_03755
MPMX20_03756: MPMX20_03756 - FAD assembly factor SdhE, at 3,957,547 to 3,957,813
_03756
MPMX20_03757: MPMX20_03757 - tRNA-modifying protein YgfZ, at 3,958,108 to 3,959,088
_03757
Position (kb)
3957
3958 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3956.578 kb on + strand at 3956.580 kb on + strand at 3956.588 kb on - strand at 3956.614 kb on - strand at 3956.632 kb on + strand at 3956.637 kb on + strand at 3956.640 kb on - strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.668 kb on - strand at 3956.704 kb on + strand, within MPMX20_03754 at 3956.712 kb on - strand, within MPMX20_03754 at 3956.729 kb on + strand, within MPMX20_03754 at 3956.743 kb on + strand, within MPMX20_03754 at 3956.777 kb on - strand, within MPMX20_03754 at 3956.830 kb on + strand, within MPMX20_03754 at 3956.834 kb on - strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.970 kb on - strand, within MPMX20_03754 at 3956.988 kb on + strand, within MPMX20_03754 at 3957.059 kb on + strand, within MPMX20_03754 at 3957.062 kb on - strand, within MPMX20_03754 at 3957.130 kb on + strand at 3957.208 kb on + strand, within MPMX20_03755 at 3957.211 kb on - strand, within MPMX20_03755 at 3957.212 kb on + strand, within MPMX20_03755 at 3957.214 kb on + strand, within MPMX20_03755 at 3957.216 kb on - strand, within MPMX20_03755 at 3957.216 kb on - strand, within MPMX20_03755 at 3957.230 kb on - strand, within MPMX20_03755 at 3957.230 kb on - strand, within MPMX20_03755 at 3957.237 kb on - strand, within MPMX20_03755 at 3957.306 kb on - strand, within MPMX20_03755 at 3957.411 kb on + strand, within MPMX20_03755 at 3957.427 kb on - strand, within MPMX20_03755 at 3957.459 kb on - strand, within MPMX20_03755 at 3957.472 kb on - strand, within MPMX20_03755 at 3957.476 kb on + strand, within MPMX20_03755 at 3957.480 kb on + strand, within MPMX20_03755 at 3957.494 kb on - strand, within MPMX20_03755 at 3957.514 kb on + strand, within MPMX20_03755 at 3957.553 kb on - strand at 3957.631 kb on - strand, within MPMX20_03756 at 3957.668 kb on + strand, within MPMX20_03756 at 3957.668 kb on + strand, within MPMX20_03756 at 3957.668 kb on + strand, within MPMX20_03756 at 3957.668 kb on + strand, within MPMX20_03756 at 3957.676 kb on - strand, within MPMX20_03756 at 3957.686 kb on + strand, within MPMX20_03756 at 3957.702 kb on - strand, within MPMX20_03756 at 3957.715 kb on + strand, within MPMX20_03756 at 3957.723 kb on - strand, within MPMX20_03756 at 3957.843 kb on + strand at 3957.900 kb on - strand at 3957.900 kb on - strand at 3957.935 kb on + strand at 3957.935 kb on + strand at 3957.974 kb on + strand at 3957.984 kb on + strand at 3958.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,956,578 + -0.4 3,956,580 + -1.0 3,956,588 - -0.1 3,956,614 - -0.6 3,956,632 + +3.2 3,956,637 + -0.1 3,956,640 - -1.5 3,956,642 + -1.3 3,956,642 + +1.0 3,956,642 + -0.3 3,956,642 + -0.8 3,956,650 - -0.7 3,956,650 - -0.1 3,956,650 - +1.2 3,956,650 - -0.9 3,956,650 - -1.8 3,956,668 - -1.6 3,956,704 + MPMX20_03754 0.15 +0.6 3,956,712 - MPMX20_03754 0.16 +1.2 3,956,729 + MPMX20_03754 0.19 -2.1 3,956,743 + MPMX20_03754 0.22 -0.6 3,956,777 - MPMX20_03754 0.29 +0.2 3,956,830 + MPMX20_03754 0.39 +0.9 3,956,834 - MPMX20_03754 0.39 +1.6 3,956,900 + MPMX20_03754 0.52 +0.9 3,956,900 + MPMX20_03754 0.52 +3.2 3,956,900 + MPMX20_03754 0.52 -0.2 3,956,900 + MPMX20_03754 0.52 +0.8 3,956,970 - MPMX20_03754 0.66 -1.9 3,956,988 + MPMX20_03754 0.69 +0.2 3,957,059 + MPMX20_03754 0.83 +1.5 3,957,062 - MPMX20_03754 0.83 +1.2 3,957,130 + -1.2 3,957,208 + MPMX20_03755 0.13 +0.6 3,957,211 - MPMX20_03755 0.13 -1.6 3,957,212 + MPMX20_03755 0.14 -0.5 3,957,214 + MPMX20_03755 0.14 -1.4 3,957,216 - MPMX20_03755 0.15 -2.1 3,957,216 - MPMX20_03755 0.15 -0.1 3,957,230 - MPMX20_03755 0.18 +1.8 3,957,230 - MPMX20_03755 0.18 -1.3 3,957,237 - MPMX20_03755 0.20 -0.7 3,957,306 - MPMX20_03755 0.36 -0.1 3,957,411 + MPMX20_03755 0.62 -1.3 3,957,427 - MPMX20_03755 0.66 -1.2 3,957,459 - MPMX20_03755 0.74 +0.3 3,957,472 - MPMX20_03755 0.77 +0.0 3,957,476 + MPMX20_03755 0.78 -0.0 3,957,480 + MPMX20_03755 0.79 -0.8 3,957,494 - MPMX20_03755 0.82 -1.6 3,957,514 + MPMX20_03755 0.87 -1.6 3,957,553 - +0.6 3,957,631 - MPMX20_03756 0.31 -1.9 3,957,668 + MPMX20_03756 0.45 -1.5 3,957,668 + MPMX20_03756 0.45 -3.0 3,957,668 + MPMX20_03756 0.45 -2.3 3,957,668 + MPMX20_03756 0.45 -1.8 3,957,676 - MPMX20_03756 0.48 +0.6 3,957,686 + MPMX20_03756 0.52 -0.5 3,957,702 - MPMX20_03756 0.58 -0.4 3,957,715 + MPMX20_03756 0.63 -2.7 3,957,723 - MPMX20_03756 0.66 -2.1 3,957,843 + +1.0 3,957,900 - -0.2 3,957,900 - -0.1 3,957,935 + -1.0 3,957,935 + +0.3 3,957,974 + -0.5 3,957,984 + -0.0 3,958,038 - +2.2
Or see this region's nucleotide sequence