Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03264 and MPMX20_03265 are separated by 60 nucleotides MPMX20_03265 and MPMX20_03266 are separated by 145 nucleotides MPMX20_03266 and MPMX20_03267 are separated by 48 nucleotides
MPMX20_03264: MPMX20_03264 - Chorismate synthase, at 3,434,286 to 3,435,371
_03264
MPMX20_03265: MPMX20_03265 - 50S ribosomal protein L3 glutamine methyltransferase, at 3,435,432 to 3,436,364
_03265
MPMX20_03266: MPMX20_03266 - Endonuclease MutS2, at 3,436,510 to 3,437,061
_03266
MPMX20_03267: MPMX20_03267 - Phosphohistidine phosphatase SixA, at 3,437,110 to 3,437,595
_03267
Position (kb)
3435
3436
3437 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3434.474 kb on + strand, within MPMX20_03264 at 3434.489 kb on - strand, within MPMX20_03264 at 3434.530 kb on - strand, within MPMX20_03264 at 3434.612 kb on + strand, within MPMX20_03264 at 3434.810 kb on + strand, within MPMX20_03264 at 3435.050 kb on - strand, within MPMX20_03264 at 3435.063 kb on - strand, within MPMX20_03264 at 3435.093 kb on - strand, within MPMX20_03264 at 3435.125 kb on + strand, within MPMX20_03264 at 3435.133 kb on - strand, within MPMX20_03264 at 3435.133 kb on - strand, within MPMX20_03264 at 3435.224 kb on + strand, within MPMX20_03264 at 3435.233 kb on + strand, within MPMX20_03264 at 3435.266 kb on + strand at 3435.300 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.308 kb on - strand at 3435.308 kb on - strand at 3435.308 kb on - strand at 3435.313 kb on - strand at 3435.313 kb on - strand at 3435.313 kb on - strand at 3435.313 kb on - strand at 3435.350 kb on + strand at 3435.358 kb on - strand at 3435.368 kb on - strand at 3435.376 kb on + strand at 3435.395 kb on + strand at 3435.413 kb on - strand at 3435.437 kb on - strand at 3435.479 kb on - strand at 3435.541 kb on + strand, within MPMX20_03265 at 3435.579 kb on - strand, within MPMX20_03265 at 3435.589 kb on - strand, within MPMX20_03265 at 3435.627 kb on + strand, within MPMX20_03265 at 3435.799 kb on - strand, within MPMX20_03265 at 3435.799 kb on - strand, within MPMX20_03265 at 3435.809 kb on - strand, within MPMX20_03265 at 3435.833 kb on + strand, within MPMX20_03265 at 3435.833 kb on + strand, within MPMX20_03265 at 3435.833 kb on + strand, within MPMX20_03265 at 3435.906 kb on + strand, within MPMX20_03265 at 3436.048 kb on + strand, within MPMX20_03265 at 3436.049 kb on + strand, within MPMX20_03265 at 3436.076 kb on - strand, within MPMX20_03265 at 3436.109 kb on + strand, within MPMX20_03265 at 3436.158 kb on + strand, within MPMX20_03265 at 3436.158 kb on + strand, within MPMX20_03265 at 3436.171 kb on + strand, within MPMX20_03265 at 3436.245 kb on - strand, within MPMX20_03265 at 3436.313 kb on + strand at 3436.547 kb on - strand at 3436.560 kb on + strand at 3436.561 kb on - strand at 3436.590 kb on + strand, within MPMX20_03266 at 3436.640 kb on - strand, within MPMX20_03266 at 3436.749 kb on - strand, within MPMX20_03266 at 3436.814 kb on + strand, within MPMX20_03266 at 3436.822 kb on - strand, within MPMX20_03266 at 3436.824 kb on + strand, within MPMX20_03266 at 3437.000 kb on - strand, within MPMX20_03266 at 3437.050 kb on + strand at 3437.080 kb on + strand at 3437.083 kb on - strand at 3437.239 kb on - strand, within MPMX20_03267 at 3437.239 kb on - strand, within MPMX20_03267 at 3437.281 kb on + strand, within MPMX20_03267 at 3437.286 kb on + strand, within MPMX20_03267
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,434,474 + MPMX20_03264 0.17 -2.9 3,434,489 - MPMX20_03264 0.19 -1.0 3,434,530 - MPMX20_03264 0.22 -2.2 3,434,612 + MPMX20_03264 0.30 -0.8 3,434,810 + MPMX20_03264 0.48 -1.5 3,435,050 - MPMX20_03264 0.70 +0.3 3,435,063 - MPMX20_03264 0.72 -0.5 3,435,093 - MPMX20_03264 0.74 -0.7 3,435,125 + MPMX20_03264 0.77 -2.3 3,435,133 - MPMX20_03264 0.78 -1.2 3,435,133 - MPMX20_03264 0.78 -3.0 3,435,224 + MPMX20_03264 0.86 -2.7 3,435,233 + MPMX20_03264 0.87 -1.8 3,435,266 + -0.5 3,435,300 + -0.7 3,435,305 + -1.8 3,435,305 + -1.3 3,435,305 + -1.1 3,435,305 + +0.0 3,435,305 + -1.7 3,435,308 - -0.6 3,435,308 - -0.6 3,435,308 - -3.2 3,435,313 - -3.0 3,435,313 - -3.0 3,435,313 - +0.7 3,435,313 - +0.5 3,435,350 + +2.3 3,435,358 - -2.3 3,435,368 - -2.6 3,435,376 + +0.3 3,435,395 + -1.8 3,435,413 - -0.4 3,435,437 - +1.7 3,435,479 - +0.7 3,435,541 + MPMX20_03265 0.12 +0.2 3,435,579 - MPMX20_03265 0.16 -0.4 3,435,589 - MPMX20_03265 0.17 -1.3 3,435,627 + MPMX20_03265 0.21 -0.8 3,435,799 - MPMX20_03265 0.39 +0.7 3,435,799 - MPMX20_03265 0.39 -1.7 3,435,809 - MPMX20_03265 0.40 -1.9 3,435,833 + MPMX20_03265 0.43 +0.5 3,435,833 + MPMX20_03265 0.43 -2.0 3,435,833 + MPMX20_03265 0.43 +0.7 3,435,906 + MPMX20_03265 0.51 +0.0 3,436,048 + MPMX20_03265 0.66 -1.4 3,436,049 + MPMX20_03265 0.66 -0.7 3,436,076 - MPMX20_03265 0.69 -1.1 3,436,109 + MPMX20_03265 0.73 -1.3 3,436,158 + MPMX20_03265 0.78 -0.1 3,436,158 + MPMX20_03265 0.78 -1.7 3,436,171 + MPMX20_03265 0.79 -1.0 3,436,245 - MPMX20_03265 0.87 -0.7 3,436,313 + -1.6 3,436,547 - -1.1 3,436,560 + +1.3 3,436,561 - +0.9 3,436,590 + MPMX20_03266 0.14 +3.0 3,436,640 - MPMX20_03266 0.24 +0.7 3,436,749 - MPMX20_03266 0.43 +1.1 3,436,814 + MPMX20_03266 0.55 +1.2 3,436,822 - MPMX20_03266 0.57 +0.2 3,436,824 + MPMX20_03266 0.57 +1.0 3,437,000 - MPMX20_03266 0.89 -1.6 3,437,050 + +0.5 3,437,080 + +0.2 3,437,083 - -0.9 3,437,239 - MPMX20_03267 0.27 -1.1 3,437,239 - MPMX20_03267 0.27 -2.5 3,437,281 + MPMX20_03267 0.35 +0.0 3,437,286 + MPMX20_03267 0.36 +0.7
Or see this region's nucleotide sequence