Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03265

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03264 and MPMX20_03265 are separated by 60 nucleotidesMPMX20_03265 and MPMX20_03266 are separated by 145 nucleotidesMPMX20_03266 and MPMX20_03267 are separated by 48 nucleotides MPMX20_03264: MPMX20_03264 - Chorismate synthase, at 3,434,286 to 3,435,371 _03264 MPMX20_03265: MPMX20_03265 - 50S ribosomal protein L3 glutamine methyltransferase, at 3,435,432 to 3,436,364 _03265 MPMX20_03266: MPMX20_03266 - Endonuclease MutS2, at 3,436,510 to 3,437,061 _03266 MPMX20_03267: MPMX20_03267 - Phosphohistidine phosphatase SixA, at 3,437,110 to 3,437,595 _03267 Position (kb) 3435 3436 3437Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3434.474 kb on + strand, within MPMX20_03264at 3434.489 kb on - strand, within MPMX20_03264at 3434.530 kb on - strand, within MPMX20_03264at 3434.612 kb on + strand, within MPMX20_03264at 3434.810 kb on + strand, within MPMX20_03264at 3435.050 kb on - strand, within MPMX20_03264at 3435.063 kb on - strand, within MPMX20_03264at 3435.093 kb on - strand, within MPMX20_03264at 3435.125 kb on + strand, within MPMX20_03264at 3435.133 kb on - strand, within MPMX20_03264at 3435.133 kb on - strand, within MPMX20_03264at 3435.224 kb on + strand, within MPMX20_03264at 3435.233 kb on + strand, within MPMX20_03264at 3435.266 kb on + strandat 3435.300 kb on + strandat 3435.305 kb on + strandat 3435.305 kb on + strandat 3435.305 kb on + strandat 3435.305 kb on + strandat 3435.305 kb on + strandat 3435.308 kb on - strandat 3435.308 kb on - strandat 3435.308 kb on - strandat 3435.313 kb on - strandat 3435.313 kb on - strandat 3435.313 kb on - strandat 3435.313 kb on - strandat 3435.350 kb on + strandat 3435.358 kb on - strandat 3435.368 kb on - strandat 3435.376 kb on + strandat 3435.395 kb on + strandat 3435.413 kb on - strandat 3435.437 kb on - strandat 3435.479 kb on - strandat 3435.541 kb on + strand, within MPMX20_03265at 3435.579 kb on - strand, within MPMX20_03265at 3435.589 kb on - strand, within MPMX20_03265at 3435.627 kb on + strand, within MPMX20_03265at 3435.799 kb on - strand, within MPMX20_03265at 3435.799 kb on - strand, within MPMX20_03265at 3435.809 kb on - strand, within MPMX20_03265at 3435.833 kb on + strand, within MPMX20_03265at 3435.833 kb on + strand, within MPMX20_03265at 3435.833 kb on + strand, within MPMX20_03265at 3435.906 kb on + strand, within MPMX20_03265at 3436.048 kb on + strand, within MPMX20_03265at 3436.049 kb on + strand, within MPMX20_03265at 3436.076 kb on - strand, within MPMX20_03265at 3436.109 kb on + strand, within MPMX20_03265at 3436.158 kb on + strand, within MPMX20_03265at 3436.158 kb on + strand, within MPMX20_03265at 3436.171 kb on + strand, within MPMX20_03265at 3436.245 kb on - strand, within MPMX20_03265at 3436.313 kb on + strandat 3436.547 kb on - strandat 3436.560 kb on + strandat 3436.561 kb on - strandat 3436.590 kb on + strand, within MPMX20_03266at 3436.640 kb on - strand, within MPMX20_03266at 3436.749 kb on - strand, within MPMX20_03266at 3436.814 kb on + strand, within MPMX20_03266at 3436.822 kb on - strand, within MPMX20_03266at 3436.824 kb on + strand, within MPMX20_03266at 3437.000 kb on - strand, within MPMX20_03266at 3437.050 kb on + strandat 3437.080 kb on + strandat 3437.083 kb on - strandat 3437.239 kb on - strand, within MPMX20_03267at 3437.239 kb on - strand, within MPMX20_03267at 3437.281 kb on + strand, within MPMX20_03267at 3437.286 kb on + strand, within MPMX20_03267

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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3,434,474 + MPMX20_03264 0.17 -2.9
3,434,489 - MPMX20_03264 0.19 -1.0
3,434,530 - MPMX20_03264 0.22 -2.2
3,434,612 + MPMX20_03264 0.30 -0.8
3,434,810 + MPMX20_03264 0.48 -1.5
3,435,050 - MPMX20_03264 0.70 +0.3
3,435,063 - MPMX20_03264 0.72 -0.5
3,435,093 - MPMX20_03264 0.74 -0.7
3,435,125 + MPMX20_03264 0.77 -2.3
3,435,133 - MPMX20_03264 0.78 -1.2
3,435,133 - MPMX20_03264 0.78 -3.0
3,435,224 + MPMX20_03264 0.86 -2.7
3,435,233 + MPMX20_03264 0.87 -1.8
3,435,266 + -0.5
3,435,300 + -0.7
3,435,305 + -1.8
3,435,305 + -1.3
3,435,305 + -1.1
3,435,305 + +0.0
3,435,305 + -1.7
3,435,308 - -0.6
3,435,308 - -0.6
3,435,308 - -3.2
3,435,313 - -3.0
3,435,313 - -3.0
3,435,313 - +0.7
3,435,313 - +0.5
3,435,350 + +2.3
3,435,358 - -2.3
3,435,368 - -2.6
3,435,376 + +0.3
3,435,395 + -1.8
3,435,413 - -0.4
3,435,437 - +1.7
3,435,479 - +0.7
3,435,541 + MPMX20_03265 0.12 +0.2
3,435,579 - MPMX20_03265 0.16 -0.4
3,435,589 - MPMX20_03265 0.17 -1.3
3,435,627 + MPMX20_03265 0.21 -0.8
3,435,799 - MPMX20_03265 0.39 +0.7
3,435,799 - MPMX20_03265 0.39 -1.7
3,435,809 - MPMX20_03265 0.40 -1.9
3,435,833 + MPMX20_03265 0.43 +0.5
3,435,833 + MPMX20_03265 0.43 -2.0
3,435,833 + MPMX20_03265 0.43 +0.7
3,435,906 + MPMX20_03265 0.51 +0.0
3,436,048 + MPMX20_03265 0.66 -1.4
3,436,049 + MPMX20_03265 0.66 -0.7
3,436,076 - MPMX20_03265 0.69 -1.1
3,436,109 + MPMX20_03265 0.73 -1.3
3,436,158 + MPMX20_03265 0.78 -0.1
3,436,158 + MPMX20_03265 0.78 -1.7
3,436,171 + MPMX20_03265 0.79 -1.0
3,436,245 - MPMX20_03265 0.87 -0.7
3,436,313 + -1.6
3,436,547 - -1.1
3,436,560 + +1.3
3,436,561 - +0.9
3,436,590 + MPMX20_03266 0.14 +3.0
3,436,640 - MPMX20_03266 0.24 +0.7
3,436,749 - MPMX20_03266 0.43 +1.1
3,436,814 + MPMX20_03266 0.55 +1.2
3,436,822 - MPMX20_03266 0.57 +0.2
3,436,824 + MPMX20_03266 0.57 +1.0
3,437,000 - MPMX20_03266 0.89 -1.6
3,437,050 + +0.5
3,437,080 + +0.2
3,437,083 - -0.9
3,437,239 - MPMX20_03267 0.27 -1.1
3,437,239 - MPMX20_03267 0.27 -2.5
3,437,281 + MPMX20_03267 0.35 +0.0
3,437,286 + MPMX20_03267 0.36 +0.7

Or see this region's nucleotide sequence