Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03161 and MPMX20_03162 are separated by 305 nucleotides MPMX20_03162 and MPMX20_03163 are separated by 46 nucleotides MPMX20_03163 and MPMX20_03164 are separated by 93 nucleotides
MPMX20_03161: MPMX20_03161 - hypothetical protein, at 3,320,836 to 3,321,165
_03161
MPMX20_03162: MPMX20_03162 - hypothetical protein, at 3,321,471 to 3,321,689
_03162
MPMX20_03163: MPMX20_03163 - hypothetical protein, at 3,321,736 to 3,321,846
_03163
MPMX20_03164: MPMX20_03164 - hypothetical protein, at 3,321,940 to 3,322,899
_03164
Position (kb)
3321
3322 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 3320.752 kb on + strand at 3320.752 kb on + strand at 3320.754 kb on - strand at 3320.760 kb on - strand at 3320.782 kb on + strand at 3320.790 kb on - strand at 3320.792 kb on - strand at 3320.792 kb on - strand at 3320.808 kb on + strand at 3320.822 kb on + strand at 3320.822 kb on + strand at 3320.822 kb on + strand at 3320.822 kb on + strand at 3320.830 kb on - strand at 3320.830 kb on - strand at 3320.831 kb on - strand at 3320.831 kb on - strand at 3320.833 kb on + strand at 3320.856 kb on - strand at 3320.857 kb on + strand at 3320.857 kb on + strand at 3320.931 kb on - strand, within MPMX20_03161 at 3320.931 kb on - strand, within MPMX20_03161 at 3320.937 kb on - strand, within MPMX20_03161 at 3320.937 kb on - strand, within MPMX20_03161 at 3320.942 kb on - strand, within MPMX20_03161 at 3320.950 kb on - strand, within MPMX20_03161 at 3320.952 kb on + strand, within MPMX20_03161 at 3320.961 kb on - strand, within MPMX20_03161 at 3321.061 kb on + strand, within MPMX20_03161 at 3321.069 kb on - strand, within MPMX20_03161 at 3321.069 kb on - strand, within MPMX20_03161 at 3321.088 kb on + strand, within MPMX20_03161 at 3321.106 kb on - strand, within MPMX20_03161 at 3321.111 kb on + strand, within MPMX20_03161 at 3321.132 kb on + strand, within MPMX20_03161 at 3321.137 kb on + strand at 3321.143 kb on + strand at 3321.145 kb on - strand at 3321.145 kb on - strand at 3321.151 kb on - strand at 3321.151 kb on - strand at 3321.151 kb on - strand at 3321.152 kb on + strand at 3321.160 kb on - strand at 3321.166 kb on + strand at 3321.174 kb on - strand at 3321.174 kb on - strand at 3321.174 kb on - strand at 3321.201 kb on + strand at 3321.234 kb on + strand at 3321.234 kb on + strand at 3321.243 kb on + strand at 3321.243 kb on + strand at 3321.243 kb on + strand at 3321.243 kb on + strand at 3321.251 kb on - strand at 3321.251 kb on - strand at 3321.253 kb on + strand at 3321.259 kb on + strand at 3321.259 kb on + strand at 3321.259 kb on + strand at 3321.265 kb on + strand at 3321.265 kb on + strand at 3321.265 kb on + strand at 3321.266 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.268 kb on - strand at 3321.268 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.278 kb on + strand at 3321.278 kb on - strand at 3321.285 kb on + strand at 3321.285 kb on + strand at 3321.320 kb on + strand at 3321.325 kb on + strand at 3321.381 kb on + strand at 3321.381 kb on - strand at 3321.424 kb on + strand at 3321.460 kb on + strand at 3321.468 kb on - strand at 3321.468 kb on - strand at 3321.481 kb on + strand at 3321.514 kb on - strand, within MPMX20_03162 at 3321.515 kb on - strand, within MPMX20_03162 at 3321.515 kb on - strand, within MPMX20_03162 at 3321.517 kb on + strand, within MPMX20_03162 at 3321.531 kb on - strand, within MPMX20_03162 at 3321.549 kb on - strand, within MPMX20_03162 at 3321.615 kb on + strand, within MPMX20_03162 at 3321.615 kb on + strand, within MPMX20_03162 at 3321.620 kb on + strand, within MPMX20_03162 at 3321.620 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.628 kb on - strand, within MPMX20_03162 at 3321.628 kb on - strand, within MPMX20_03162 at 3321.628 kb on - strand, within MPMX20_03162 at 3321.630 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.678 kb on - strand at 3321.715 kb on + strand at 3321.753 kb on - strand, within MPMX20_03163 at 3321.753 kb on - strand, within MPMX20_03163 at 3321.862 kb on - strand at 3321.951 kb on - strand at 3322.004 kb on + strand at 3322.009 kb on + strand at 3322.010 kb on - strand at 3322.104 kb on + strand, within MPMX20_03164 at 3322.109 kb on + strand, within MPMX20_03164 at 3322.173 kb on + strand, within MPMX20_03164 at 3322.191 kb on - strand, within MPMX20_03164 at 3322.213 kb on + strand, within MPMX20_03164 at 3322.213 kb on + strand, within MPMX20_03164 at 3322.221 kb on - strand, within MPMX20_03164 at 3322.238 kb on - strand, within MPMX20_03164 at 3322.245 kb on + strand, within MPMX20_03164 at 3322.248 kb on - strand, within MPMX20_03164 at 3322.248 kb on - strand, within MPMX20_03164 at 3322.253 kb on - strand, within MPMX20_03164 at 3322.253 kb on - strand, within MPMX20_03164 at 3322.253 kb on - strand, within MPMX20_03164 at 3322.294 kb on + strand, within MPMX20_03164 at 3322.320 kb on + strand, within MPMX20_03164 at 3322.326 kb on + strand, within MPMX20_03164 at 3322.328 kb on - strand, within MPMX20_03164 at 3322.369 kb on - strand, within MPMX20_03164 at 3322.374 kb on - strand, within MPMX20_03164 at 3322.376 kb on + strand, within MPMX20_03164 at 3322.406 kb on - strand, within MPMX20_03164 at 3322.469 kb on - strand, within MPMX20_03164 at 3322.481 kb on + strand, within MPMX20_03164 at 3322.495 kb on + strand, within MPMX20_03164 at 3322.500 kb on + strand, within MPMX20_03164 at 3322.500 kb on + strand, within MPMX20_03164 at 3322.503 kb on - strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.513 kb on - strand, within MPMX20_03164 at 3322.550 kb on + strand, within MPMX20_03164 at 3322.579 kb on + strand, within MPMX20_03164 at 3322.598 kb on + strand, within MPMX20_03164 at 3322.604 kb on + strand, within MPMX20_03164 at 3322.624 kb on + strand, within MPMX20_03164 at 3322.633 kb on + strand, within MPMX20_03164 at 3322.643 kb on + strand, within MPMX20_03164 at 3322.643 kb on + strand, within MPMX20_03164 at 3322.643 kb on + strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.658 kb on + strand, within MPMX20_03164 at 3322.683 kb on - strand, within MPMX20_03164 at 3322.686 kb on + strand, within MPMX20_03164 at 3322.686 kb on + strand, within MPMX20_03164 at 3322.686 kb on + strand, within MPMX20_03164 at 3322.702 kb on + strand, within MPMX20_03164 at 3322.702 kb on + strand, within MPMX20_03164 at 3322.716 kb on + strand, within MPMX20_03164 at 3322.717 kb on - strand, within MPMX20_03164 at 3322.731 kb on + strand, within MPMX20_03164 at 3322.731 kb on + strand, within MPMX20_03164 at 3322.732 kb on + strand, within MPMX20_03164 at 3322.739 kb on - strand, within MPMX20_03164 at 3322.740 kb on - strand, within MPMX20_03164 at 3322.746 kb on + strand, within MPMX20_03164 at 3322.753 kb on - strand, within MPMX20_03164 at 3322.754 kb on + strand, within MPMX20_03164 at 3322.759 kb on + strand, within MPMX20_03164 at 3322.768 kb on - strand, within MPMX20_03164 at 3322.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,320,752 + -0.3 3,320,752 + +0.3 3,320,754 - +0.1 3,320,760 - -0.8 3,320,782 + +2.9 3,320,790 - +4.9 3,320,792 - -0.0 3,320,792 - +0.9 3,320,808 + +1.1 3,320,822 + -0.5 3,320,822 + -0.4 3,320,822 + +0.7 3,320,822 + +0.3 3,320,830 - -0.2 3,320,830 - +0.1 3,320,831 - +1.1 3,320,831 - +1.0 3,320,833 + -0.3 3,320,856 - +0.7 3,320,857 + -1.0 3,320,857 + +0.4 3,320,931 - MPMX20_03161 0.29 -0.1 3,320,931 - MPMX20_03161 0.29 +0.3 3,320,937 - MPMX20_03161 0.31 -2.2 3,320,937 - MPMX20_03161 0.31 -0.8 3,320,942 - MPMX20_03161 0.32 -0.3 3,320,950 - MPMX20_03161 0.35 +0.5 3,320,952 + MPMX20_03161 0.35 +0.4 3,320,961 - MPMX20_03161 0.38 +0.5 3,321,061 + MPMX20_03161 0.68 +0.7 3,321,069 - MPMX20_03161 0.71 +0.6 3,321,069 - MPMX20_03161 0.71 -1.0 3,321,088 + MPMX20_03161 0.76 +0.4 3,321,106 - MPMX20_03161 0.82 -2.9 3,321,111 + MPMX20_03161 0.83 -2.6 3,321,132 + MPMX20_03161 0.90 +0.3 3,321,137 + -0.6 3,321,143 + -1.6 3,321,145 - -0.1 3,321,145 - +0.0 3,321,151 - -0.2 3,321,151 - -0.1 3,321,151 - -0.3 3,321,152 + -1.3 3,321,160 - +1.5 3,321,166 + -0.8 3,321,174 - -0.3 3,321,174 - +0.8 3,321,174 - +0.2 3,321,201 + -0.9 3,321,234 + -2.6 3,321,234 + -1.2 3,321,243 + -1.3 3,321,243 + +0.1 3,321,243 + +0.7 3,321,243 + +0.7 3,321,251 - +1.4 3,321,251 - -0.9 3,321,253 + +0.4 3,321,259 + -0.0 3,321,259 + -0.5 3,321,259 + +0.0 3,321,265 + +0.4 3,321,265 + +1.5 3,321,265 + +0.7 3,321,266 - -0.3 3,321,267 - +0.7 3,321,267 - +0.1 3,321,267 - -0.7 3,321,267 - -0.2 3,321,267 - -0.7 3,321,268 - +7.2 3,321,268 - +1.0 3,321,273 - -0.2 3,321,273 - -0.3 3,321,273 - -1.7 3,321,273 - -1.0 3,321,273 - +0.5 3,321,273 - -1.2 3,321,278 + +1.3 3,321,278 - +0.2 3,321,285 + +0.3 3,321,285 + +0.0 3,321,320 + -1.0 3,321,325 + -1.8 3,321,381 + +0.3 3,321,381 - -1.2 3,321,424 + +0.3 3,321,460 + +0.5 3,321,468 - +0.9 3,321,468 - -0.0 3,321,481 + -0.3 3,321,514 - MPMX20_03162 0.20 -0.5 3,321,515 - MPMX20_03162 0.20 +0.0 3,321,515 - MPMX20_03162 0.20 +0.2 3,321,517 + MPMX20_03162 0.21 -0.4 3,321,531 - MPMX20_03162 0.27 -0.8 3,321,549 - MPMX20_03162 0.36 +0.3 3,321,615 + MPMX20_03162 0.66 -2.2 3,321,615 + MPMX20_03162 0.66 -1.0 3,321,620 + MPMX20_03162 0.68 -1.0 3,321,620 + MPMX20_03162 0.68 -1.8 3,321,627 + MPMX20_03162 0.71 +0.1 3,321,627 + MPMX20_03162 0.71 +0.7 3,321,627 + MPMX20_03162 0.71 +0.7 3,321,627 + MPMX20_03162 0.71 -1.0 3,321,627 + MPMX20_03162 0.71 +0.6 3,321,627 + MPMX20_03162 0.71 +0.7 3,321,627 + MPMX20_03162 0.71 +1.3 3,321,627 + MPMX20_03162 0.71 -0.1 3,321,627 + MPMX20_03162 0.71 +0.4 3,321,627 + MPMX20_03162 0.71 +1.7 3,321,627 + MPMX20_03162 0.71 -1.5 3,321,628 - MPMX20_03162 0.72 +1.0 3,321,628 - MPMX20_03162 0.72 -0.0 3,321,628 - MPMX20_03162 0.72 -0.0 3,321,630 - MPMX20_03162 0.73 -1.1 3,321,635 - MPMX20_03162 0.75 +0.2 3,321,635 - MPMX20_03162 0.75 -1.1 3,321,635 - MPMX20_03162 0.75 +0.2 3,321,635 - MPMX20_03162 0.75 +0.4 3,321,635 - MPMX20_03162 0.75 -1.1 3,321,635 - MPMX20_03162 0.75 -0.4 3,321,678 - -0.6 3,321,715 + +1.7 3,321,753 - MPMX20_03163 0.15 -0.4 3,321,753 - MPMX20_03163 0.15 -1.5 3,321,862 - +1.1 3,321,951 - -1.3 3,322,004 + -0.4 3,322,009 + -2.2 3,322,010 - -0.9 3,322,104 + MPMX20_03164 0.17 -0.4 3,322,109 + MPMX20_03164 0.18 +0.4 3,322,173 + MPMX20_03164 0.24 +1.3 3,322,191 - MPMX20_03164 0.26 +0.9 3,322,213 + MPMX20_03164 0.28 +0.0 3,322,213 + MPMX20_03164 0.28 -0.1 3,322,221 - MPMX20_03164 0.29 -2.1 3,322,238 - MPMX20_03164 0.31 +0.1 3,322,245 + MPMX20_03164 0.32 -0.3 3,322,248 - MPMX20_03164 0.32 -1.7 3,322,248 - MPMX20_03164 0.32 +1.3 3,322,253 - MPMX20_03164 0.33 +0.2 3,322,253 - MPMX20_03164 0.33 -1.0 3,322,253 - MPMX20_03164 0.33 +0.6 3,322,294 + MPMX20_03164 0.37 -0.5 3,322,320 + MPMX20_03164 0.40 -0.6 3,322,326 + MPMX20_03164 0.40 +1.3 3,322,328 - MPMX20_03164 0.40 +1.0 3,322,369 - MPMX20_03164 0.45 -1.4 3,322,374 - MPMX20_03164 0.45 -1.0 3,322,376 + MPMX20_03164 0.45 -0.2 3,322,406 - MPMX20_03164 0.49 +0.4 3,322,469 - MPMX20_03164 0.55 -0.3 3,322,481 + MPMX20_03164 0.56 -0.6 3,322,495 + MPMX20_03164 0.58 -0.1 3,322,500 + MPMX20_03164 0.58 -0.0 3,322,500 + MPMX20_03164 0.58 -1.2 3,322,503 - MPMX20_03164 0.59 +4.1 3,322,505 + MPMX20_03164 0.59 +1.3 3,322,505 + MPMX20_03164 0.59 -0.0 3,322,505 + MPMX20_03164 0.59 -0.0 3,322,505 + MPMX20_03164 0.59 -0.4 3,322,513 - MPMX20_03164 0.60 -0.4 3,322,550 + MPMX20_03164 0.64 +1.0 3,322,579 + MPMX20_03164 0.67 +1.1 3,322,598 + MPMX20_03164 0.69 +1.0 3,322,604 + MPMX20_03164 0.69 -0.9 3,322,624 + MPMX20_03164 0.71 +0.6 3,322,633 + MPMX20_03164 0.72 -0.5 3,322,643 + MPMX20_03164 0.73 -0.8 3,322,643 + MPMX20_03164 0.73 +0.3 3,322,643 + MPMX20_03164 0.73 -0.6 3,322,651 - MPMX20_03164 0.74 -0.0 3,322,651 - MPMX20_03164 0.74 -0.5 3,322,651 - MPMX20_03164 0.74 +0.6 3,322,651 - MPMX20_03164 0.74 +0.3 3,322,658 + MPMX20_03164 0.75 -0.5 3,322,683 - MPMX20_03164 0.77 -0.6 3,322,686 + MPMX20_03164 0.78 +0.3 3,322,686 + MPMX20_03164 0.78 -0.0 3,322,686 + MPMX20_03164 0.78 +0.0 3,322,702 + MPMX20_03164 0.79 +0.3 3,322,702 + MPMX20_03164 0.79 -0.7 3,322,716 + MPMX20_03164 0.81 +3.6 3,322,717 - MPMX20_03164 0.81 -1.0 3,322,731 + MPMX20_03164 0.82 -0.2 3,322,731 + MPMX20_03164 0.82 -0.3 3,322,732 + MPMX20_03164 0.82 +2.1 3,322,739 - MPMX20_03164 0.83 -0.7 3,322,740 - MPMX20_03164 0.83 -0.7 3,322,746 + MPMX20_03164 0.84 +0.1 3,322,753 - MPMX20_03164 0.85 -0.8 3,322,754 + MPMX20_03164 0.85 +1.9 3,322,759 + MPMX20_03164 0.85 -0.4 3,322,768 - MPMX20_03164 0.86 -0.2 3,322,837 + -0.1
Or see this region's nucleotide sequence