Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03081 and MPMX20_03082 are separated by 173 nucleotides MPMX20_03082 and MPMX20_03083 are separated by 20 nucleotides
MPMX20_03081: MPMX20_03081 - Hydrogen peroxide-inducible genes activator, at 3,231,704 to 3,232,621
_03081
MPMX20_03082: MPMX20_03082 - Adenine deaminase 2, at 3,232,795 to 3,234,525
_03082
MPMX20_03083: MPMX20_03083 - Adenine permease AdeQ, at 3,234,546 to 3,235,889
_03083
Position (kb)
3232
3233
3234
3235 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9 at 3231.797 kb on + strand, within MPMX20_03081 at 3231.805 kb on - strand, within MPMX20_03081 at 3231.828 kb on - strand, within MPMX20_03081 at 3231.828 kb on - strand, within MPMX20_03081 at 3231.828 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.833 kb on - strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.855 kb on + strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.863 kb on - strand, within MPMX20_03081 at 3231.896 kb on + strand, within MPMX20_03081 at 3232.048 kb on - strand, within MPMX20_03081 at 3232.137 kb on + strand, within MPMX20_03081 at 3232.145 kb on - strand, within MPMX20_03081 at 3232.184 kb on - strand, within MPMX20_03081 at 3232.294 kb on + strand, within MPMX20_03081 at 3232.328 kb on + strand, within MPMX20_03081 at 3232.336 kb on - strand, within MPMX20_03081 at 3232.364 kb on - strand, within MPMX20_03081 at 3232.374 kb on - strand, within MPMX20_03081 at 3232.417 kb on - strand, within MPMX20_03081 at 3232.501 kb on - strand, within MPMX20_03081 at 3232.501 kb on - strand, within MPMX20_03081 at 3232.552 kb on + strand at 3232.576 kb on - strand at 3232.653 kb on - strand at 3232.703 kb on + strand at 3232.799 kb on + strand at 3232.844 kb on + strand at 3232.881 kb on - strand at 3232.927 kb on + strand at 3232.927 kb on + strand at 3232.927 kb on + strand at 3232.935 kb on - strand at 3232.935 kb on - strand at 3232.935 kb on - strand at 3232.935 kb on - strand at 3232.935 kb on - strand at 3233.051 kb on - strand, within MPMX20_03082 at 3233.235 kb on + strand, within MPMX20_03082 at 3233.325 kb on + strand, within MPMX20_03082 at 3233.333 kb on - strand, within MPMX20_03082 at 3233.356 kb on + strand, within MPMX20_03082 at 3233.364 kb on - strand, within MPMX20_03082 at 3233.407 kb on + strand, within MPMX20_03082 at 3233.419 kb on + strand, within MPMX20_03082 at 3233.496 kb on + strand, within MPMX20_03082 at 3233.496 kb on + strand, within MPMX20_03082 at 3233.504 kb on - strand, within MPMX20_03082 at 3233.506 kb on - strand, within MPMX20_03082 at 3233.645 kb on + strand, within MPMX20_03082 at 3233.682 kb on + strand, within MPMX20_03082 at 3233.713 kb on - strand, within MPMX20_03082 at 3233.752 kb on - strand, within MPMX20_03082 at 3233.790 kb on - strand, within MPMX20_03082 at 3233.795 kb on - strand, within MPMX20_03082 at 3233.822 kb on + strand, within MPMX20_03082 at 3233.859 kb on - strand, within MPMX20_03082 at 3233.881 kb on - strand, within MPMX20_03082 at 3233.882 kb on + strand, within MPMX20_03082 at 3233.895 kb on - strand, within MPMX20_03082 at 3233.922 kb on - strand, within MPMX20_03082 at 3233.955 kb on + strand, within MPMX20_03082 at 3234.014 kb on - strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.040 kb on - strand, within MPMX20_03082 at 3234.040 kb on - strand, within MPMX20_03082 at 3234.040 kb on - strand, within MPMX20_03082 at 3234.042 kb on + strand, within MPMX20_03082 at 3234.104 kb on - strand, within MPMX20_03082 at 3234.166 kb on - strand, within MPMX20_03082 at 3234.327 kb on + strand, within MPMX20_03082 at 3234.335 kb on - strand, within MPMX20_03082 at 3234.335 kb on - strand, within MPMX20_03082 at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.514 kb on - strand at 3234.514 kb on - strand at 3234.586 kb on + strand at 3234.586 kb on + strand at 3234.594 kb on - strand at 3234.615 kb on + strand at 3234.699 kb on - strand, within MPMX20_03083 at 3234.713 kb on - strand, within MPMX20_03083 at 3234.719 kb on + strand, within MPMX20_03083 at 3234.753 kb on - strand, within MPMX20_03083 at 3234.824 kb on - strand, within MPMX20_03083 at 3234.831 kb on + strand, within MPMX20_03083 at 3234.836 kb on + strand, within MPMX20_03083 at 3234.839 kb on - strand, within MPMX20_03083 at 3234.887 kb on + strand, within MPMX20_03083 at 3234.931 kb on + strand, within MPMX20_03083 at 3234.931 kb on + strand, within MPMX20_03083 at 3234.939 kb on - strand, within MPMX20_03083 at 3234.948 kb on + strand, within MPMX20_03083 at 3234.956 kb on - strand, within MPMX20_03083 at 3234.973 kb on + strand, within MPMX20_03083 at 3234.981 kb on - strand, within MPMX20_03083 at 3234.997 kb on + strand, within MPMX20_03083 at 3235.115 kb on + strand, within MPMX20_03083 at 3235.169 kb on + strand, within MPMX20_03083 at 3235.169 kb on + strand, within MPMX20_03083 at 3235.174 kb on + strand, within MPMX20_03083 at 3235.177 kb on - strand, within MPMX20_03083 at 3235.182 kb on - strand, within MPMX20_03083 at 3235.381 kb on + strand, within MPMX20_03083
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,231,797 + MPMX20_03081 0.10 +0.1 3,231,805 - MPMX20_03081 0.11 +0.3 3,231,828 - MPMX20_03081 0.14 +0.6 3,231,828 - MPMX20_03081 0.14 +0.9 3,231,828 - MPMX20_03081 0.14 +0.4 3,231,833 - MPMX20_03081 0.14 +0.9 3,231,833 - MPMX20_03081 0.14 -2.3 3,231,833 - MPMX20_03081 0.14 +0.2 3,231,833 - MPMX20_03081 0.14 -1.0 3,231,833 - MPMX20_03081 0.14 +0.3 3,231,833 - MPMX20_03081 0.14 +0.1 3,231,855 + MPMX20_03081 0.16 -1.8 3,231,855 + MPMX20_03081 0.16 +0.6 3,231,855 + MPMX20_03081 0.16 +0.1 3,231,855 + MPMX20_03081 0.16 -0.2 3,231,855 + MPMX20_03081 0.16 +0.6 3,231,855 + MPMX20_03081 0.16 -0.2 3,231,855 + MPMX20_03081 0.16 +0.1 3,231,855 + MPMX20_03081 0.16 -0.7 3,231,855 + MPMX20_03081 0.16 -0.4 3,231,855 + MPMX20_03081 0.16 -1.6 3,231,855 + MPMX20_03081 0.16 -0.7 3,231,855 + MPMX20_03081 0.16 +1.8 3,231,855 + MPMX20_03081 0.16 -0.3 3,231,855 + MPMX20_03081 0.16 -0.2 3,231,855 + MPMX20_03081 0.16 -0.1 3,231,863 - MPMX20_03081 0.17 -0.1 3,231,863 - MPMX20_03081 0.17 +0.6 3,231,863 - MPMX20_03081 0.17 +0.3 3,231,863 - MPMX20_03081 0.17 -0.4 3,231,863 - MPMX20_03081 0.17 -1.1 3,231,863 - MPMX20_03081 0.17 -2.4 3,231,863 - MPMX20_03081 0.17 -2.0 3,231,863 - MPMX20_03081 0.17 +0.4 3,231,863 - MPMX20_03081 0.17 -1.4 3,231,863 - MPMX20_03081 0.17 -0.5 3,231,896 + MPMX20_03081 0.21 -1.0 3,232,048 - MPMX20_03081 0.37 +0.6 3,232,137 + MPMX20_03081 0.47 +1.8 3,232,145 - MPMX20_03081 0.48 +1.3 3,232,184 - MPMX20_03081 0.52 -0.6 3,232,294 + MPMX20_03081 0.64 -0.7 3,232,328 + MPMX20_03081 0.68 -0.9 3,232,336 - MPMX20_03081 0.69 -0.1 3,232,364 - MPMX20_03081 0.72 +1.3 3,232,374 - MPMX20_03081 0.73 +1.9 3,232,417 - MPMX20_03081 0.78 -1.2 3,232,501 - MPMX20_03081 0.87 +0.3 3,232,501 - MPMX20_03081 0.87 -0.6 3,232,552 + -0.6 3,232,576 - -0.9 3,232,653 - +0.7 3,232,703 + +0.1 3,232,799 + +0.7 3,232,844 + +0.1 3,232,881 - -1.4 3,232,927 + +0.1 3,232,927 + -0.5 3,232,927 + +1.3 3,232,935 - -0.1 3,232,935 - -0.1 3,232,935 - +0.8 3,232,935 - +0.0 3,232,935 - +0.7 3,233,051 - MPMX20_03082 0.15 +1.7 3,233,235 + MPMX20_03082 0.25 -0.1 3,233,325 + MPMX20_03082 0.31 +0.5 3,233,333 - MPMX20_03082 0.31 -1.2 3,233,356 + MPMX20_03082 0.32 -0.7 3,233,364 - MPMX20_03082 0.33 +0.5 3,233,407 + MPMX20_03082 0.35 -0.2 3,233,419 + MPMX20_03082 0.36 -0.6 3,233,496 + MPMX20_03082 0.40 +0.1 3,233,496 + MPMX20_03082 0.40 +2.3 3,233,504 - MPMX20_03082 0.41 +0.2 3,233,506 - MPMX20_03082 0.41 -0.1 3,233,645 + MPMX20_03082 0.49 +0.6 3,233,682 + MPMX20_03082 0.51 -1.1 3,233,713 - MPMX20_03082 0.53 -0.6 3,233,752 - MPMX20_03082 0.55 -1.1 3,233,790 - MPMX20_03082 0.57 -0.1 3,233,795 - MPMX20_03082 0.58 +0.2 3,233,822 + MPMX20_03082 0.59 -1.0 3,233,859 - MPMX20_03082 0.61 +1.7 3,233,881 - MPMX20_03082 0.63 +0.6 3,233,882 + MPMX20_03082 0.63 -1.9 3,233,895 - MPMX20_03082 0.64 -1.9 3,233,922 - MPMX20_03082 0.65 -0.8 3,233,955 + MPMX20_03082 0.67 -0.6 3,234,014 - MPMX20_03082 0.70 -0.7 3,234,032 + MPMX20_03082 0.71 -0.1 3,234,032 + MPMX20_03082 0.71 +1.2 3,234,032 + MPMX20_03082 0.71 +2.3 3,234,032 + MPMX20_03082 0.71 +0.3 3,234,032 + MPMX20_03082 0.71 -0.1 3,234,032 + MPMX20_03082 0.71 -0.7 3,234,040 - MPMX20_03082 0.72 -0.1 3,234,040 - MPMX20_03082 0.72 +0.8 3,234,040 - MPMX20_03082 0.72 +0.3 3,234,042 + MPMX20_03082 0.72 -0.3 3,234,104 - MPMX20_03082 0.76 +0.3 3,234,166 - MPMX20_03082 0.79 +0.1 3,234,327 + MPMX20_03082 0.89 +8.8 3,234,335 - MPMX20_03082 0.89 -0.0 3,234,335 - MPMX20_03082 0.89 +0.3 3,234,443 + -2.2 3,234,443 + +1.1 3,234,443 + +0.5 3,234,443 + +0.6 3,234,443 + +0.4 3,234,443 + +0.3 3,234,443 + -0.1 3,234,443 + -0.7 3,234,451 - +0.5 3,234,451 - -0.7 3,234,451 - +1.4 3,234,451 - -1.2 3,234,451 - +0.2 3,234,451 - +0.9 3,234,451 - -0.8 3,234,514 - +0.2 3,234,514 - -1.7 3,234,586 + +0.1 3,234,586 + -0.7 3,234,594 - -0.8 3,234,615 + +0.7 3,234,699 - MPMX20_03083 0.11 +0.0 3,234,713 - MPMX20_03083 0.12 +1.0 3,234,719 + MPMX20_03083 0.13 -0.1 3,234,753 - MPMX20_03083 0.15 -0.3 3,234,824 - MPMX20_03083 0.21 +0.4 3,234,831 + MPMX20_03083 0.21 +1.0 3,234,836 + MPMX20_03083 0.22 +0.3 3,234,839 - MPMX20_03083 0.22 +1.3 3,234,887 + MPMX20_03083 0.25 -0.8 3,234,931 + MPMX20_03083 0.29 -1.7 3,234,931 + MPMX20_03083 0.29 -0.2 3,234,939 - MPMX20_03083 0.29 -1.5 3,234,948 + MPMX20_03083 0.30 -0.4 3,234,956 - MPMX20_03083 0.31 -0.5 3,234,973 + MPMX20_03083 0.32 +0.3 3,234,981 - MPMX20_03083 0.32 +0.4 3,234,997 + MPMX20_03083 0.34 -1.4 3,235,115 + MPMX20_03083 0.42 -0.3 3,235,169 + MPMX20_03083 0.46 -0.0 3,235,169 + MPMX20_03083 0.46 -0.8 3,235,174 + MPMX20_03083 0.47 -1.6 3,235,177 - MPMX20_03083 0.47 -0.9 3,235,182 - MPMX20_03083 0.47 +2.3 3,235,381 + MPMX20_03083 0.62 +0.1
Or see this region's nucleotide sequence