Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01941 and MPMX20_01942 are separated by 188 nucleotides MPMX20_01942 and MPMX20_01943 are separated by 313 nucleotides MPMX20_01943 and MPMX20_01944 are separated by 8 nucleotides
MPMX20_01941: MPMX20_01941 - Blue light- and temperature-regulated antirepressor BluF, at 2,036,798 to 2,038,018
_01941
MPMX20_01942: MPMX20_01942 - HTH-type transcriptional repressor BluR, at 2,038,207 to 2,038,935
_01942
MPMX20_01943: MPMX20_01943 - Protein SufA, at 2,039,249 to 2,039,617
_01943
MPMX20_01944: MPMX20_01944 - FeS cluster assembly protein SufB, at 2,039,626 to 2,041,116
_01944
Position (kb)
2038
2039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2037.227 kb on - strand, within MPMX20_01941 at 2037.229 kb on + strand, within MPMX20_01941 at 2037.293 kb on - strand, within MPMX20_01941 at 2037.371 kb on + strand, within MPMX20_01941 at 2037.379 kb on - strand, within MPMX20_01941 at 2037.379 kb on - strand, within MPMX20_01941 at 2037.398 kb on - strand, within MPMX20_01941 at 2037.436 kb on + strand, within MPMX20_01941 at 2037.445 kb on - strand, within MPMX20_01941 at 2037.467 kb on + strand, within MPMX20_01941 at 2037.529 kb on + strand, within MPMX20_01941 at 2037.558 kb on - strand, within MPMX20_01941 at 2037.664 kb on - strand, within MPMX20_01941 at 2037.742 kb on - strand, within MPMX20_01941 at 2037.871 kb on + strand, within MPMX20_01941 at 2037.871 kb on + strand, within MPMX20_01941 at 2037.921 kb on + strand at 2037.921 kb on - strand at 2038.071 kb on + strand at 2038.073 kb on + strand at 2038.097 kb on + strand at 2038.102 kb on - strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on + strand at 2038.105 kb on - strand at 2038.107 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.113 kb on - strand at 2038.162 kb on + strand at 2038.201 kb on + strand at 2038.210 kb on + strand at 2038.229 kb on + strand at 2038.264 kb on - strand at 2038.264 kb on - strand at 2038.281 kb on + strand, within MPMX20_01942 at 2038.362 kb on + strand, within MPMX20_01942 at 2038.401 kb on + strand, within MPMX20_01942 at 2038.402 kb on + strand, within MPMX20_01942 at 2038.440 kb on + strand, within MPMX20_01942 at 2038.440 kb on + strand, within MPMX20_01942 at 2038.440 kb on + strand, within MPMX20_01942 at 2038.440 kb on + strand, within MPMX20_01942 at 2038.448 kb on - strand, within MPMX20_01942 at 2038.448 kb on - strand, within MPMX20_01942 at 2038.448 kb on - strand, within MPMX20_01942 at 2038.495 kb on - strand, within MPMX20_01942 at 2038.496 kb on + strand, within MPMX20_01942 at 2038.504 kb on - strand, within MPMX20_01942 at 2038.629 kb on + strand, within MPMX20_01942 at 2038.637 kb on - strand, within MPMX20_01942 at 2038.637 kb on - strand, within MPMX20_01942 at 2038.665 kb on - strand, within MPMX20_01942 at 2038.665 kb on - strand, within MPMX20_01942 at 2038.704 kb on + strand, within MPMX20_01942 at 2038.719 kb on - strand, within MPMX20_01942 at 2038.745 kb on - strand, within MPMX20_01942 at 2038.876 kb on - strand at 2038.906 kb on - strand at 2039.077 kb on + strand at 2039.119 kb on + strand at 2039.119 kb on + strand at 2039.127 kb on - strand at 2039.180 kb on + strand at 2039.180 kb on + strand at 2039.220 kb on - strand at 2039.230 kb on + strand at 2039.239 kb on + strand at 2039.247 kb on - strand at 2039.268 kb on + strand at 2039.276 kb on - strand at 2039.287 kb on + strand, within MPMX20_01943 at 2039.306 kb on - strand, within MPMX20_01943 at 2039.313 kb on - strand, within MPMX20_01943 at 2039.361 kb on + strand, within MPMX20_01943 at 2039.379 kb on + strand, within MPMX20_01943 at 2039.402 kb on + strand, within MPMX20_01943 at 2039.519 kb on + strand, within MPMX20_01943 at 2039.519 kb on + strand, within MPMX20_01943 at 2039.527 kb on - strand, within MPMX20_01943 at 2039.548 kb on - strand, within MPMX20_01943 at 2039.584 kb on - strand at 2039.605 kb on - strand at 2039.612 kb on - strand at 2039.621 kb on + strand at 2039.629 kb on - strand at 2039.828 kb on - strand, within MPMX20_01944 at 2039.897 kb on + strand, within MPMX20_01944 at 2039.900 kb on + strand, within MPMX20_01944 at 2039.902 kb on + strand, within MPMX20_01944 at 2039.933 kb on + strand, within MPMX20_01944
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 2,037,227 - MPMX20_01941 0.35 -1.7 2,037,229 + MPMX20_01941 0.35 -1.3 2,037,293 - MPMX20_01941 0.41 +0.6 2,037,371 + MPMX20_01941 0.47 +1.1 2,037,379 - MPMX20_01941 0.48 -1.1 2,037,379 - MPMX20_01941 0.48 -2.4 2,037,398 - MPMX20_01941 0.49 +0.4 2,037,436 + MPMX20_01941 0.52 +0.4 2,037,445 - MPMX20_01941 0.53 +0.6 2,037,467 + MPMX20_01941 0.55 -0.1 2,037,529 + MPMX20_01941 0.60 +0.6 2,037,558 - MPMX20_01941 0.62 -1.5 2,037,664 - MPMX20_01941 0.71 +0.7 2,037,742 - MPMX20_01941 0.77 +0.6 2,037,871 + MPMX20_01941 0.88 +0.2 2,037,871 + MPMX20_01941 0.88 -0.4 2,037,921 + +0.2 2,037,921 - -0.2 2,038,071 + +0.9 2,038,073 + -2.7 2,038,097 + -1.6 2,038,102 - -0.2 2,038,105 + -0.9 2,038,105 + -1.3 2,038,105 + +0.2 2,038,105 + -2.0 2,038,105 + -0.2 2,038,105 + -1.2 2,038,105 + -0.8 2,038,105 + -1.3 2,038,105 + +0.6 2,038,105 + -0.1 2,038,105 - -2.9 2,038,107 - +0.5 2,038,113 - +1.0 2,038,113 - -0.1 2,038,113 - -0.8 2,038,113 - -0.7 2,038,113 - +1.2 2,038,113 - +1.6 2,038,113 - -0.7 2,038,113 - -0.8 2,038,113 - -0.9 2,038,113 - +1.0 2,038,113 - +1.2 2,038,162 + -0.4 2,038,201 + -0.0 2,038,210 + -0.6 2,038,229 + -2.0 2,038,264 - -0.5 2,038,264 - -0.9 2,038,281 + MPMX20_01942 0.10 -1.1 2,038,362 + MPMX20_01942 0.21 -0.8 2,038,401 + MPMX20_01942 0.27 -1.2 2,038,402 + MPMX20_01942 0.27 -2.0 2,038,440 + MPMX20_01942 0.32 -1.0 2,038,440 + MPMX20_01942 0.32 -1.6 2,038,440 + MPMX20_01942 0.32 -1.4 2,038,440 + MPMX20_01942 0.32 -1.4 2,038,448 - MPMX20_01942 0.33 -1.6 2,038,448 - MPMX20_01942 0.33 +1.2 2,038,448 - MPMX20_01942 0.33 +0.2 2,038,495 - MPMX20_01942 0.40 -1.8 2,038,496 + MPMX20_01942 0.40 +0.6 2,038,504 - MPMX20_01942 0.41 -0.8 2,038,629 + MPMX20_01942 0.58 -1.1 2,038,637 - MPMX20_01942 0.59 +2.2 2,038,637 - MPMX20_01942 0.59 -1.5 2,038,665 - MPMX20_01942 0.63 -0.4 2,038,665 - MPMX20_01942 0.63 +0.6 2,038,704 + MPMX20_01942 0.68 +0.6 2,038,719 - MPMX20_01942 0.70 +2.2 2,038,745 - MPMX20_01942 0.74 -1.5 2,038,876 - -1.5 2,038,906 - -0.3 2,039,077 + -0.0 2,039,119 + -1.0 2,039,119 + -0.0 2,039,127 - +0.3 2,039,180 + +0.6 2,039,180 + +0.5 2,039,220 - +0.2 2,039,230 + +0.7 2,039,239 + -0.6 2,039,247 - -1.3 2,039,268 + -2.5 2,039,276 - +0.7 2,039,287 + MPMX20_01943 0.10 +0.2 2,039,306 - MPMX20_01943 0.15 -1.0 2,039,313 - MPMX20_01943 0.17 -0.2 2,039,361 + MPMX20_01943 0.30 +0.3 2,039,379 + MPMX20_01943 0.35 +0.6 2,039,402 + MPMX20_01943 0.41 +0.1 2,039,519 + MPMX20_01943 0.73 -0.5 2,039,519 + MPMX20_01943 0.73 +1.4 2,039,527 - MPMX20_01943 0.75 +1.5 2,039,548 - MPMX20_01943 0.81 -1.0 2,039,584 - +0.1 2,039,605 - -1.2 2,039,612 - -0.1 2,039,621 + +0.6 2,039,629 - +0.4 2,039,828 - MPMX20_01944 0.14 -0.8 2,039,897 + MPMX20_01944 0.18 +0.2 2,039,900 + MPMX20_01944 0.18 -1.6 2,039,902 + MPMX20_01944 0.19 -0.0 2,039,933 + MPMX20_01944 0.21 +3.2
Or see this region's nucleotide sequence