Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01942

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01941 and MPMX20_01942 are separated by 188 nucleotidesMPMX20_01942 and MPMX20_01943 are separated by 313 nucleotidesMPMX20_01943 and MPMX20_01944 are separated by 8 nucleotides MPMX20_01941: MPMX20_01941 - Blue light- and temperature-regulated antirepressor BluF, at 2,036,798 to 2,038,018 _01941 MPMX20_01942: MPMX20_01942 - HTH-type transcriptional repressor BluR, at 2,038,207 to 2,038,935 _01942 MPMX20_01943: MPMX20_01943 - Protein SufA, at 2,039,249 to 2,039,617 _01943 MPMX20_01944: MPMX20_01944 - FeS cluster assembly protein SufB, at 2,039,626 to 2,041,116 _01944 Position (kb) 2038 2039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2037.227 kb on - strand, within MPMX20_01941at 2037.229 kb on + strand, within MPMX20_01941at 2037.293 kb on - strand, within MPMX20_01941at 2037.371 kb on + strand, within MPMX20_01941at 2037.379 kb on - strand, within MPMX20_01941at 2037.379 kb on - strand, within MPMX20_01941at 2037.398 kb on - strand, within MPMX20_01941at 2037.436 kb on + strand, within MPMX20_01941at 2037.445 kb on - strand, within MPMX20_01941at 2037.467 kb on + strand, within MPMX20_01941at 2037.529 kb on + strand, within MPMX20_01941at 2037.558 kb on - strand, within MPMX20_01941at 2037.664 kb on - strand, within MPMX20_01941at 2037.742 kb on - strand, within MPMX20_01941at 2037.871 kb on + strand, within MPMX20_01941at 2037.871 kb on + strand, within MPMX20_01941at 2037.921 kb on + strandat 2037.921 kb on - strandat 2038.071 kb on + strandat 2038.073 kb on + strandat 2038.097 kb on + strandat 2038.102 kb on - strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on + strandat 2038.105 kb on - strandat 2038.107 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.113 kb on - strandat 2038.162 kb on + strandat 2038.201 kb on + strandat 2038.210 kb on + strandat 2038.229 kb on + strandat 2038.264 kb on - strandat 2038.264 kb on - strandat 2038.281 kb on + strand, within MPMX20_01942at 2038.362 kb on + strand, within MPMX20_01942at 2038.401 kb on + strand, within MPMX20_01942at 2038.402 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.440 kb on + strand, within MPMX20_01942at 2038.448 kb on - strand, within MPMX20_01942at 2038.448 kb on - strand, within MPMX20_01942at 2038.448 kb on - strand, within MPMX20_01942at 2038.495 kb on - strand, within MPMX20_01942at 2038.496 kb on + strand, within MPMX20_01942at 2038.504 kb on - strand, within MPMX20_01942at 2038.629 kb on + strand, within MPMX20_01942at 2038.637 kb on - strand, within MPMX20_01942at 2038.637 kb on - strand, within MPMX20_01942at 2038.665 kb on - strand, within MPMX20_01942at 2038.665 kb on - strand, within MPMX20_01942at 2038.704 kb on + strand, within MPMX20_01942at 2038.719 kb on - strand, within MPMX20_01942at 2038.745 kb on - strand, within MPMX20_01942at 2038.876 kb on - strandat 2038.906 kb on - strandat 2039.077 kb on + strandat 2039.119 kb on + strandat 2039.119 kb on + strandat 2039.127 kb on - strandat 2039.180 kb on + strandat 2039.180 kb on + strandat 2039.220 kb on - strandat 2039.230 kb on + strandat 2039.239 kb on + strandat 2039.247 kb on - strandat 2039.268 kb on + strandat 2039.276 kb on - strandat 2039.287 kb on + strand, within MPMX20_01943at 2039.306 kb on - strand, within MPMX20_01943at 2039.313 kb on - strand, within MPMX20_01943at 2039.361 kb on + strand, within MPMX20_01943at 2039.379 kb on + strand, within MPMX20_01943at 2039.402 kb on + strand, within MPMX20_01943at 2039.519 kb on + strand, within MPMX20_01943at 2039.519 kb on + strand, within MPMX20_01943at 2039.527 kb on - strand, within MPMX20_01943at 2039.548 kb on - strand, within MPMX20_01943at 2039.584 kb on - strandat 2039.605 kb on - strandat 2039.612 kb on - strandat 2039.621 kb on + strandat 2039.629 kb on - strandat 2039.828 kb on - strand, within MPMX20_01944at 2039.897 kb on + strand, within MPMX20_01944at 2039.900 kb on + strand, within MPMX20_01944at 2039.902 kb on + strand, within MPMX20_01944at 2039.933 kb on + strand, within MPMX20_01944

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
remove
2,037,227 - MPMX20_01941 0.35 -1.7
2,037,229 + MPMX20_01941 0.35 -1.3
2,037,293 - MPMX20_01941 0.41 +0.6
2,037,371 + MPMX20_01941 0.47 +1.1
2,037,379 - MPMX20_01941 0.48 -1.1
2,037,379 - MPMX20_01941 0.48 -2.4
2,037,398 - MPMX20_01941 0.49 +0.4
2,037,436 + MPMX20_01941 0.52 +0.4
2,037,445 - MPMX20_01941 0.53 +0.6
2,037,467 + MPMX20_01941 0.55 -0.1
2,037,529 + MPMX20_01941 0.60 +0.6
2,037,558 - MPMX20_01941 0.62 -1.5
2,037,664 - MPMX20_01941 0.71 +0.7
2,037,742 - MPMX20_01941 0.77 +0.6
2,037,871 + MPMX20_01941 0.88 +0.2
2,037,871 + MPMX20_01941 0.88 -0.4
2,037,921 + +0.2
2,037,921 - -0.2
2,038,071 + +0.9
2,038,073 + -2.7
2,038,097 + -1.6
2,038,102 - -0.2
2,038,105 + -0.9
2,038,105 + -1.3
2,038,105 + +0.2
2,038,105 + -2.0
2,038,105 + -0.2
2,038,105 + -1.2
2,038,105 + -0.8
2,038,105 + -1.3
2,038,105 + +0.6
2,038,105 + -0.1
2,038,105 - -2.9
2,038,107 - +0.5
2,038,113 - +1.0
2,038,113 - -0.1
2,038,113 - -0.8
2,038,113 - -0.7
2,038,113 - +1.2
2,038,113 - +1.6
2,038,113 - -0.7
2,038,113 - -0.8
2,038,113 - -0.9
2,038,113 - +1.0
2,038,113 - +1.2
2,038,162 + -0.4
2,038,201 + -0.0
2,038,210 + -0.6
2,038,229 + -2.0
2,038,264 - -0.5
2,038,264 - -0.9
2,038,281 + MPMX20_01942 0.10 -1.1
2,038,362 + MPMX20_01942 0.21 -0.8
2,038,401 + MPMX20_01942 0.27 -1.2
2,038,402 + MPMX20_01942 0.27 -2.0
2,038,440 + MPMX20_01942 0.32 -1.0
2,038,440 + MPMX20_01942 0.32 -1.6
2,038,440 + MPMX20_01942 0.32 -1.4
2,038,440 + MPMX20_01942 0.32 -1.4
2,038,448 - MPMX20_01942 0.33 -1.6
2,038,448 - MPMX20_01942 0.33 +1.2
2,038,448 - MPMX20_01942 0.33 +0.2
2,038,495 - MPMX20_01942 0.40 -1.8
2,038,496 + MPMX20_01942 0.40 +0.6
2,038,504 - MPMX20_01942 0.41 -0.8
2,038,629 + MPMX20_01942 0.58 -1.1
2,038,637 - MPMX20_01942 0.59 +2.2
2,038,637 - MPMX20_01942 0.59 -1.5
2,038,665 - MPMX20_01942 0.63 -0.4
2,038,665 - MPMX20_01942 0.63 +0.6
2,038,704 + MPMX20_01942 0.68 +0.6
2,038,719 - MPMX20_01942 0.70 +2.2
2,038,745 - MPMX20_01942 0.74 -1.5
2,038,876 - -1.5
2,038,906 - -0.3
2,039,077 + -0.0
2,039,119 + -1.0
2,039,119 + -0.0
2,039,127 - +0.3
2,039,180 + +0.6
2,039,180 + +0.5
2,039,220 - +0.2
2,039,230 + +0.7
2,039,239 + -0.6
2,039,247 - -1.3
2,039,268 + -2.5
2,039,276 - +0.7
2,039,287 + MPMX20_01943 0.10 +0.2
2,039,306 - MPMX20_01943 0.15 -1.0
2,039,313 - MPMX20_01943 0.17 -0.2
2,039,361 + MPMX20_01943 0.30 +0.3
2,039,379 + MPMX20_01943 0.35 +0.6
2,039,402 + MPMX20_01943 0.41 +0.1
2,039,519 + MPMX20_01943 0.73 -0.5
2,039,519 + MPMX20_01943 0.73 +1.4
2,039,527 - MPMX20_01943 0.75 +1.5
2,039,548 - MPMX20_01943 0.81 -1.0
2,039,584 - +0.1
2,039,605 - -1.2
2,039,612 - -0.1
2,039,621 + +0.6
2,039,629 - +0.4
2,039,828 - MPMX20_01944 0.14 -0.8
2,039,897 + MPMX20_01944 0.18 +0.2
2,039,900 + MPMX20_01944 0.18 -1.6
2,039,902 + MPMX20_01944 0.19 -0.0
2,039,933 + MPMX20_01944 0.21 +3.2

Or see this region's nucleotide sequence