Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01926 and MPMX20_01927 overlap by 4 nucleotides MPMX20_01927 and MPMX20_01928 are separated by 85 nucleotides MPMX20_01928 and MPMX20_01929 are separated by 51 nucleotides MPMX20_01929 and MPMX20_01930 are separated by 67 nucleotides
MPMX20_01926: MPMX20_01926 - hypothetical protein, at 2,021,518 to 2,024,574
_01926
MPMX20_01927: MPMX20_01927 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 2,024,571 to 2,024,981
_01927
MPMX20_01928: MPMX20_01928 - hypothetical protein, at 2,025,067 to 2,025,261
_01928
MPMX20_01929: MPMX20_01929 - Inhibitor of hydrogen peroxide resistance, at 2,025,313 to 2,025,942
_01929
MPMX20_01930: MPMX20_01930 - Inhibitor of hydrogen peroxide resistance, at 2,026,010 to 2,026,669
_01930
Position (kb)
2025
2026 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2024.230 kb on + strand, within MPMX20_01926 at 2024.243 kb on - strand, within MPMX20_01926 at 2024.271 kb on + strand at 2024.273 kb on + strand at 2024.293 kb on - strand at 2024.349 kb on - strand at 2024.376 kb on + strand at 2024.376 kb on + strand at 2024.406 kb on - strand at 2024.488 kb on + strand at 2024.496 kb on - strand at 2024.500 kb on - strand at 2024.534 kb on - strand at 2024.545 kb on + strand at 2024.553 kb on - strand at 2024.553 kb on - strand at 2024.629 kb on - strand, within MPMX20_01927 at 2024.664 kb on + strand, within MPMX20_01927 at 2024.709 kb on + strand, within MPMX20_01927 at 2024.717 kb on - strand, within MPMX20_01927 at 2024.768 kb on - strand, within MPMX20_01927 at 2024.768 kb on - strand, within MPMX20_01927 at 2024.791 kb on - strand, within MPMX20_01927 at 2024.823 kb on - strand, within MPMX20_01927 at 2024.823 kb on - strand, within MPMX20_01927 at 2024.847 kb on + strand, within MPMX20_01927 at 2024.854 kb on + strand, within MPMX20_01927 at 2024.854 kb on + strand, within MPMX20_01927 at 2024.862 kb on - strand, within MPMX20_01927 at 2024.942 kb on + strand at 2025.045 kb on - strand at 2025.063 kb on + strand at 2025.063 kb on + strand at 2025.071 kb on - strand at 2025.082 kb on + strand at 2025.083 kb on + strand at 2025.083 kb on + strand at 2025.083 kb on + strand at 2025.083 kb on + strand at 2025.091 kb on - strand, within MPMX20_01928 at 2025.091 kb on - strand, within MPMX20_01928 at 2025.136 kb on - strand, within MPMX20_01928 at 2025.140 kb on - strand, within MPMX20_01928 at 2025.163 kb on - strand, within MPMX20_01928 at 2025.173 kb on - strand, within MPMX20_01928 at 2025.185 kb on - strand, within MPMX20_01928 at 2025.208 kb on - strand, within MPMX20_01928 at 2025.208 kb on - strand, within MPMX20_01928 at 2025.222 kb on + strand, within MPMX20_01928 at 2025.230 kb on - strand, within MPMX20_01928 at 2025.235 kb on - strand, within MPMX20_01928 at 2025.253 kb on - strand at 2025.260 kb on - strand at 2025.311 kb on + strand at 2025.311 kb on + strand at 2025.311 kb on + strand at 2025.316 kb on + strand at 2025.319 kb on - strand at 2025.324 kb on - strand at 2025.324 kb on - strand at 2025.352 kb on + strand at 2025.355 kb on - strand at 2025.356 kb on + strand at 2025.357 kb on + strand at 2025.362 kb on + strand at 2025.365 kb on - strand at 2025.366 kb on + strand at 2025.410 kb on - strand, within MPMX20_01929 at 2025.417 kb on - strand, within MPMX20_01929 at 2025.447 kb on + strand, within MPMX20_01929 at 2025.452 kb on + strand, within MPMX20_01929 at 2025.455 kb on - strand, within MPMX20_01929 at 2025.455 kb on - strand, within MPMX20_01929 at 2025.472 kb on + strand, within MPMX20_01929 at 2025.477 kb on + strand, within MPMX20_01929 at 2025.523 kb on + strand, within MPMX20_01929 at 2025.525 kb on + strand, within MPMX20_01929 at 2025.538 kb on - strand, within MPMX20_01929 at 2025.548 kb on + strand, within MPMX20_01929 at 2025.557 kb on - strand, within MPMX20_01929 at 2025.575 kb on + strand, within MPMX20_01929 at 2025.575 kb on + strand, within MPMX20_01929 at 2025.583 kb on - strand, within MPMX20_01929 at 2025.593 kb on - strand, within MPMX20_01929 at 2025.615 kb on - strand, within MPMX20_01929 at 2025.626 kb on + strand, within MPMX20_01929 at 2025.626 kb on + strand, within MPMX20_01929 at 2025.626 kb on + strand, within MPMX20_01929 at 2025.626 kb on + strand, within MPMX20_01929 at 2025.626 kb on + strand, within MPMX20_01929 at 2025.634 kb on - strand, within MPMX20_01929 at 2025.634 kb on - strand, within MPMX20_01929 at 2025.634 kb on - strand, within MPMX20_01929 at 2025.634 kb on - strand, within MPMX20_01929 at 2025.634 kb on - strand, within MPMX20_01929 at 2025.634 kb on - strand, within MPMX20_01929 at 2025.649 kb on - strand, within MPMX20_01929 at 2025.649 kb on - strand, within MPMX20_01929 at 2025.660 kb on + strand, within MPMX20_01929 at 2025.660 kb on + strand, within MPMX20_01929 at 2025.702 kb on - strand, within MPMX20_01929 at 2025.772 kb on + strand, within MPMX20_01929 at 2025.775 kb on + strand, within MPMX20_01929 at 2025.864 kb on + strand, within MPMX20_01929 at 2025.864 kb on + strand, within MPMX20_01929 at 2025.866 kb on + strand, within MPMX20_01929 at 2025.866 kb on + strand, within MPMX20_01929 at 2025.866 kb on + strand, within MPMX20_01929 at 2025.866 kb on + strand, within MPMX20_01929 at 2025.868 kb on + strand, within MPMX20_01929 at 2025.869 kb on + strand, within MPMX20_01929 at 2025.872 kb on - strand, within MPMX20_01929 at 2025.874 kb on + strand, within MPMX20_01929 at 2025.874 kb on - strand, within MPMX20_01929 at 2025.874 kb on - strand, within MPMX20_01929 at 2025.877 kb on - strand, within MPMX20_01929 at 2025.884 kb on + strand at 2025.887 kb on + strand at 2025.938 kb on + strand at 2025.938 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.945 kb on + strand at 2025.953 kb on - strand at 2025.953 kb on - strand at 2025.953 kb on - strand at 2025.953 kb on - strand at 2025.953 kb on - strand at 2025.967 kb on + strand at 2025.967 kb on + strand at 2025.979 kb on + strand at 2026.062 kb on + strand at 2026.062 kb on + strand at 2026.069 kb on + strand at 2026.077 kb on + strand, within MPMX20_01930 at 2026.079 kb on + strand, within MPMX20_01930 at 2026.102 kb on + strand, within MPMX20_01930 at 2026.102 kb on + strand, within MPMX20_01930 at 2026.104 kb on + strand, within MPMX20_01930 at 2026.119 kb on + strand, within MPMX20_01930 at 2026.133 kb on + strand, within MPMX20_01930 at 2026.136 kb on + strand, within MPMX20_01930 at 2026.149 kb on + strand, within MPMX20_01930 at 2026.149 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.170 kb on + strand, within MPMX20_01930 at 2026.176 kb on + strand, within MPMX20_01930 at 2026.177 kb on + strand, within MPMX20_01930 at 2026.179 kb on + strand, within MPMX20_01930 at 2026.183 kb on + strand, within MPMX20_01930 at 2026.183 kb on + strand, within MPMX20_01930 at 2026.183 kb on + strand, within MPMX20_01930 at 2026.184 kb on + strand, within MPMX20_01930 at 2026.188 kb on + strand, within MPMX20_01930 at 2026.188 kb on + strand, within MPMX20_01930 at 2026.188 kb on + strand, within MPMX20_01930 at 2026.188 kb on + strand, within MPMX20_01930 at 2026.198 kb on + strand, within MPMX20_01930 at 2026.198 kb on + strand, within MPMX20_01930 at 2026.198 kb on + strand, within MPMX20_01930 at 2026.198 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.214 kb on + strand, within MPMX20_01930 at 2026.221 kb on + strand, within MPMX20_01930 at 2026.226 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.247 kb on + strand, within MPMX20_01930 at 2026.251 kb on + strand, within MPMX20_01930 at 2026.252 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930 at 2026.258 kb on + strand, within MPMX20_01930
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 2,024,230 + MPMX20_01926 0.89 -4.4 2,024,243 - MPMX20_01926 0.89 -2.6 2,024,271 + -0.9 2,024,273 + -1.0 2,024,293 - -2.1 2,024,349 - -1.0 2,024,376 + -1.8 2,024,376 + -1.5 2,024,406 - -1.6 2,024,488 + -0.7 2,024,496 - -0.2 2,024,500 - -0.5 2,024,534 - -1.6 2,024,545 + -1.2 2,024,553 - +2.2 2,024,553 - -0.3 2,024,629 - MPMX20_01927 0.14 -2.0 2,024,664 + MPMX20_01927 0.23 +0.0 2,024,709 + MPMX20_01927 0.34 +0.3 2,024,717 - MPMX20_01927 0.36 -0.8 2,024,768 - MPMX20_01927 0.48 -1.6 2,024,768 - MPMX20_01927 0.48 -0.1 2,024,791 - MPMX20_01927 0.54 +1.2 2,024,823 - MPMX20_01927 0.61 -0.6 2,024,823 - MPMX20_01927 0.61 -0.1 2,024,847 + MPMX20_01927 0.67 +0.2 2,024,854 + MPMX20_01927 0.69 -0.6 2,024,854 + MPMX20_01927 0.69 -0.7 2,024,862 - MPMX20_01927 0.71 -0.3 2,024,942 + +1.0 2,025,045 - +0.4 2,025,063 + -2.8 2,025,063 + +0.4 2,025,071 - +2.2 2,025,082 + -1.8 2,025,083 + -0.3 2,025,083 + +0.7 2,025,083 + -0.2 2,025,083 + -0.8 2,025,091 - MPMX20_01928 0.12 -0.6 2,025,091 - MPMX20_01928 0.12 -0.2 2,025,136 - MPMX20_01928 0.35 +0.2 2,025,140 - MPMX20_01928 0.37 -0.3 2,025,163 - MPMX20_01928 0.49 -0.1 2,025,173 - MPMX20_01928 0.54 +0.0 2,025,185 - MPMX20_01928 0.61 +0.9 2,025,208 - MPMX20_01928 0.72 +1.2 2,025,208 - MPMX20_01928 0.72 +0.2 2,025,222 + MPMX20_01928 0.79 +0.2 2,025,230 - MPMX20_01928 0.84 -0.6 2,025,235 - MPMX20_01928 0.86 -0.0 2,025,253 - +0.2 2,025,260 - -0.0 2,025,311 + -1.4 2,025,311 + +0.6 2,025,311 + -0.4 2,025,316 + -1.2 2,025,319 - -0.8 2,025,324 - +0.8 2,025,324 - -0.4 2,025,352 + +0.4 2,025,355 - +0.6 2,025,356 + -0.1 2,025,357 + +1.2 2,025,362 + -0.1 2,025,365 - +0.0 2,025,366 + +2.2 2,025,410 - MPMX20_01929 0.15 +0.3 2,025,417 - MPMX20_01929 0.17 -0.4 2,025,447 + MPMX20_01929 0.21 +1.4 2,025,452 + MPMX20_01929 0.22 -0.4 2,025,455 - MPMX20_01929 0.23 +0.9 2,025,455 - MPMX20_01929 0.23 -1.6 2,025,472 + MPMX20_01929 0.25 -0.8 2,025,477 + MPMX20_01929 0.26 -1.1 2,025,523 + MPMX20_01929 0.33 -0.0 2,025,525 + MPMX20_01929 0.34 -1.1 2,025,538 - MPMX20_01929 0.36 -1.6 2,025,548 + MPMX20_01929 0.37 -0.1 2,025,557 - MPMX20_01929 0.39 -0.5 2,025,575 + MPMX20_01929 0.42 -1.1 2,025,575 + MPMX20_01929 0.42 -2.0 2,025,583 - MPMX20_01929 0.43 -0.4 2,025,593 - MPMX20_01929 0.44 +1.6 2,025,615 - MPMX20_01929 0.48 -0.2 2,025,626 + MPMX20_01929 0.50 -0.7 2,025,626 + MPMX20_01929 0.50 +0.2 2,025,626 + MPMX20_01929 0.50 +2.5 2,025,626 + MPMX20_01929 0.50 +0.7 2,025,626 + MPMX20_01929 0.50 +0.6 2,025,634 - MPMX20_01929 0.51 -0.1 2,025,634 - MPMX20_01929 0.51 -0.6 2,025,634 - MPMX20_01929 0.51 +0.0 2,025,634 - MPMX20_01929 0.51 +5.3 2,025,634 - MPMX20_01929 0.51 +0.6 2,025,634 - MPMX20_01929 0.51 -0.6 2,025,649 - MPMX20_01929 0.53 +2.2 2,025,649 - MPMX20_01929 0.53 -0.8 2,025,660 + MPMX20_01929 0.55 -1.4 2,025,660 + MPMX20_01929 0.55 -0.0 2,025,702 - MPMX20_01929 0.62 +0.0 2,025,772 + MPMX20_01929 0.73 -1.6 2,025,775 + MPMX20_01929 0.73 +1.1 2,025,864 + MPMX20_01929 0.87 +1.6 2,025,864 + MPMX20_01929 0.87 -2.6 2,025,866 + MPMX20_01929 0.88 -0.4 2,025,866 + MPMX20_01929 0.88 +0.9 2,025,866 + MPMX20_01929 0.88 -0.3 2,025,866 + MPMX20_01929 0.88 -1.0 2,025,868 + MPMX20_01929 0.88 +0.3 2,025,869 + MPMX20_01929 0.88 +1.1 2,025,872 - MPMX20_01929 0.89 +1.2 2,025,874 + MPMX20_01929 0.89 -0.7 2,025,874 - MPMX20_01929 0.89 -0.7 2,025,874 - MPMX20_01929 0.89 -0.0 2,025,877 - MPMX20_01929 0.90 +0.6 2,025,884 + +0.2 2,025,887 + -1.5 2,025,938 + -0.5 2,025,938 + -0.6 2,025,945 + -0.7 2,025,945 + -1.8 2,025,945 + +0.5 2,025,945 + -1.2 2,025,945 + +0.6 2,025,945 + +0.1 2,025,945 + +0.2 2,025,945 + -0.0 2,025,945 + -1.4 2,025,945 + -1.7 2,025,945 + -1.4 2,025,945 + -1.4 2,025,953 - +2.2 2,025,953 - -0.6 2,025,953 - +1.6 2,025,953 - -0.8 2,025,953 - +0.6 2,025,967 + +0.6 2,025,967 + -0.7 2,025,979 + -0.6 2,026,062 + -0.2 2,026,062 + -0.3 2,026,069 + +0.6 2,026,077 + MPMX20_01930 0.10 +1.2 2,026,079 + MPMX20_01930 0.10 +0.6 2,026,102 + MPMX20_01930 0.14 -1.0 2,026,102 + MPMX20_01930 0.14 -0.1 2,026,104 + MPMX20_01930 0.14 +0.9 2,026,119 + MPMX20_01930 0.17 -0.4 2,026,133 + MPMX20_01930 0.19 -0.6 2,026,136 + MPMX20_01930 0.19 +3.2 2,026,149 + MPMX20_01930 0.21 -0.6 2,026,149 + MPMX20_01930 0.21 +1.2 2,026,170 + MPMX20_01930 0.24 -0.1 2,026,170 + MPMX20_01930 0.24 -1.3 2,026,170 + MPMX20_01930 0.24 -0.2 2,026,170 + MPMX20_01930 0.24 -0.3 2,026,170 + MPMX20_01930 0.24 -0.7 2,026,170 + MPMX20_01930 0.24 +0.4 2,026,170 + MPMX20_01930 0.24 -1.1 2,026,170 + MPMX20_01930 0.24 -0.5 2,026,170 + MPMX20_01930 0.24 +2.2 2,026,176 + MPMX20_01930 0.25 +0.2 2,026,177 + MPMX20_01930 0.25 -0.1 2,026,179 + MPMX20_01930 0.26 +0.1 2,026,183 + MPMX20_01930 0.26 +0.3 2,026,183 + MPMX20_01930 0.26 +0.7 2,026,183 + MPMX20_01930 0.26 -0.2 2,026,184 + MPMX20_01930 0.26 -1.2 2,026,188 + MPMX20_01930 0.27 -0.9 2,026,188 + MPMX20_01930 0.27 -0.4 2,026,188 + MPMX20_01930 0.27 +0.1 2,026,188 + MPMX20_01930 0.27 +0.8 2,026,198 + MPMX20_01930 0.28 -0.7 2,026,198 + MPMX20_01930 0.28 +0.6 2,026,198 + MPMX20_01930 0.28 -0.1 2,026,198 + MPMX20_01930 0.28 +0.5 2,026,214 + MPMX20_01930 0.31 +1.0 2,026,214 + MPMX20_01930 0.31 -0.6 2,026,214 + MPMX20_01930 0.31 -0.3 2,026,214 + MPMX20_01930 0.31 +0.9 2,026,214 + MPMX20_01930 0.31 +0.2 2,026,214 + MPMX20_01930 0.31 -0.9 2,026,214 + MPMX20_01930 0.31 -0.4 2,026,214 + MPMX20_01930 0.31 -0.7 2,026,214 + MPMX20_01930 0.31 +1.1 2,026,214 + MPMX20_01930 0.31 +0.6 2,026,221 + MPMX20_01930 0.32 +0.3 2,026,226 + MPMX20_01930 0.33 -0.1 2,026,247 + MPMX20_01930 0.36 +2.2 2,026,247 + MPMX20_01930 0.36 +0.9 2,026,247 + MPMX20_01930 0.36 -0.4 2,026,247 + MPMX20_01930 0.36 -0.7 2,026,247 + MPMX20_01930 0.36 +1.5 2,026,247 + MPMX20_01930 0.36 -0.9 2,026,247 + MPMX20_01930 0.36 +0.2 2,026,247 + MPMX20_01930 0.36 -1.5 2,026,247 + MPMX20_01930 0.36 -1.3 2,026,247 + MPMX20_01930 0.36 -0.1 2,026,247 + MPMX20_01930 0.36 -0.3 2,026,247 + MPMX20_01930 0.36 +0.6 2,026,247 + MPMX20_01930 0.36 -1.2 2,026,247 + MPMX20_01930 0.36 -1.0 2,026,247 + MPMX20_01930 0.36 -1.0 2,026,251 + MPMX20_01930 0.37 -0.1 2,026,252 + MPMX20_01930 0.37 -0.8 2,026,258 + MPMX20_01930 0.38 -2.9 2,026,258 + MPMX20_01930 0.38 +0.9 2,026,258 + MPMX20_01930 0.38 -0.1 2,026,258 + MPMX20_01930 0.38 -0.3 2,026,258 + MPMX20_01930 0.38 -0.6 2,026,258 + MPMX20_01930 0.38 +0.2 2,026,258 + MPMX20_01930 0.38 -0.2
Or see this region's nucleotide sequence