Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01472

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01470 and MPMX20_01471 are separated by 45 nucleotidesMPMX20_01471 and MPMX20_01472 are separated by 1 nucleotidesMPMX20_01472 and MPMX20_01473 are separated by 51 nucleotides MPMX20_01470: MPMX20_01470 - Glutathione-binding protein GsiB, at 1,540,575 to 1,542,113 _01470 MPMX20_01471: MPMX20_01471 - Glutathione transport system permease protein GsiC, at 1,542,159 to 1,543,079 _01471 MPMX20_01472: MPMX20_01472 - Glutathione transport system permease protein GsiD, at 1,543,081 to 1,543,992 _01472 MPMX20_01473: MPMX20_01473 - Ribosomal protein S12 methylthiotransferase RimO, at 1,544,044 to 1,545,369 _01473 Position (kb) 1543 1544Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1542.326 kb on - strand, within MPMX20_01471at 1542.343 kb on - strand, within MPMX20_01471at 1542.380 kb on - strand, within MPMX20_01471at 1542.394 kb on + strand, within MPMX20_01471at 1542.394 kb on + strand, within MPMX20_01471at 1542.394 kb on + strand, within MPMX20_01471at 1542.464 kb on - strand, within MPMX20_01471at 1542.494 kb on - strand, within MPMX20_01471at 1542.551 kb on + strand, within MPMX20_01471at 1542.551 kb on + strand, within MPMX20_01471at 1542.559 kb on - strand, within MPMX20_01471at 1542.559 kb on - strand, within MPMX20_01471at 1542.561 kb on - strand, within MPMX20_01471at 1542.625 kb on - strand, within MPMX20_01471at 1542.630 kb on + strand, within MPMX20_01471at 1542.633 kb on - strand, within MPMX20_01471at 1542.638 kb on - strand, within MPMX20_01471at 1542.664 kb on + strand, within MPMX20_01471at 1542.680 kb on - strand, within MPMX20_01471at 1542.698 kb on + strand, within MPMX20_01471at 1542.725 kb on - strand, within MPMX20_01471at 1542.789 kb on + strand, within MPMX20_01471at 1542.793 kb on - strand, within MPMX20_01471at 1542.811 kb on - strand, within MPMX20_01471at 1542.850 kb on - strand, within MPMX20_01471at 1542.908 kb on - strand, within MPMX20_01471at 1542.912 kb on + strand, within MPMX20_01471at 1542.912 kb on + strand, within MPMX20_01471at 1542.920 kb on - strand, within MPMX20_01471at 1542.954 kb on + strand, within MPMX20_01471at 1543.040 kb on + strandat 1543.040 kb on + strandat 1543.059 kb on - strandat 1543.323 kb on + strand, within MPMX20_01472at 1543.499 kb on + strand, within MPMX20_01472at 1543.580 kb on - strand, within MPMX20_01472at 1543.599 kb on + strand, within MPMX20_01472at 1543.682 kb on + strand, within MPMX20_01472at 1543.682 kb on + strand, within MPMX20_01472at 1543.682 kb on + strand, within MPMX20_01472at 1543.690 kb on - strand, within MPMX20_01472at 1543.690 kb on - strand, within MPMX20_01472at 1543.705 kb on + strand, within MPMX20_01472at 1543.715 kb on + strand, within MPMX20_01472at 1543.725 kb on + strand, within MPMX20_01472at 1543.764 kb on + strand, within MPMX20_01472at 1543.934 kb on + strandat 1544.112 kb on + strandat 1544.120 kb on - strandat 1544.277 kb on + strand, within MPMX20_01473at 1544.300 kb on + strand, within MPMX20_01473at 1544.300 kb on + strand, within MPMX20_01473at 1544.308 kb on - strand, within MPMX20_01473at 1544.383 kb on + strand, within MPMX20_01473at 1544.383 kb on + strand, within MPMX20_01473at 1544.383 kb on + strand, within MPMX20_01473at 1544.383 kb on + strand, within MPMX20_01473at 1544.383 kb on + strand, within MPMX20_01473at 1544.391 kb on - strand, within MPMX20_01473at 1544.391 kb on - strand, within MPMX20_01473at 1544.391 kb on - strand, within MPMX20_01473at 1544.454 kb on + strand, within MPMX20_01473at 1544.481 kb on - strand, within MPMX20_01473at 1544.509 kb on - strand, within MPMX20_01473at 1544.548 kb on - strand, within MPMX20_01473at 1544.633 kb on + strand, within MPMX20_01473at 1544.740 kb on + strand, within MPMX20_01473at 1544.806 kb on - strand, within MPMX20_01473at 1544.816 kb on - strand, within MPMX20_01473at 1544.825 kb on + strand, within MPMX20_01473at 1544.842 kb on + strand, within MPMX20_01473at 1544.856 kb on - strand, within MPMX20_01473at 1544.892 kb on + strand, within MPMX20_01473at 1544.892 kb on + strand, within MPMX20_01473at 1544.900 kb on - strand, within MPMX20_01473at 1544.906 kb on + strand, within MPMX20_01473at 1544.914 kb on - strand, within MPMX20_01473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
remove
1,542,326 - MPMX20_01471 0.18 -1.1
1,542,343 - MPMX20_01471 0.20 -0.7
1,542,380 - MPMX20_01471 0.24 +1.6
1,542,394 + MPMX20_01471 0.26 -2.5
1,542,394 + MPMX20_01471 0.26 -0.5
1,542,394 + MPMX20_01471 0.26 -0.3
1,542,464 - MPMX20_01471 0.33 +4.6
1,542,494 - MPMX20_01471 0.36 -0.1
1,542,551 + MPMX20_01471 0.43 -1.0
1,542,551 + MPMX20_01471 0.43 +0.2
1,542,559 - MPMX20_01471 0.43 +0.2
1,542,559 - MPMX20_01471 0.43 +0.2
1,542,561 - MPMX20_01471 0.44 +0.1
1,542,625 - MPMX20_01471 0.51 -0.4
1,542,630 + MPMX20_01471 0.51 -2.2
1,542,633 - MPMX20_01471 0.51 -0.1
1,542,638 - MPMX20_01471 0.52 -1.7
1,542,664 + MPMX20_01471 0.55 -0.6
1,542,680 - MPMX20_01471 0.57 +1.8
1,542,698 + MPMX20_01471 0.59 +2.2
1,542,725 - MPMX20_01471 0.61 -0.1
1,542,789 + MPMX20_01471 0.68 -0.5
1,542,793 - MPMX20_01471 0.69 -2.0
1,542,811 - MPMX20_01471 0.71 -1.3
1,542,850 - MPMX20_01471 0.75 -1.4
1,542,908 - MPMX20_01471 0.81 +0.5
1,542,912 + MPMX20_01471 0.82 -0.5
1,542,912 + MPMX20_01471 0.82 -0.7
1,542,920 - MPMX20_01471 0.83 -0.4
1,542,954 + MPMX20_01471 0.86 +0.8
1,543,040 + +0.3
1,543,040 + +0.2
1,543,059 - -0.2
1,543,323 + MPMX20_01472 0.27 -1.7
1,543,499 + MPMX20_01472 0.46 -1.1
1,543,580 - MPMX20_01472 0.55 -0.4
1,543,599 + MPMX20_01472 0.57 -0.1
1,543,682 + MPMX20_01472 0.66 -1.9
1,543,682 + MPMX20_01472 0.66 -2.4
1,543,682 + MPMX20_01472 0.66 -2.3
1,543,690 - MPMX20_01472 0.67 -0.6
1,543,690 - MPMX20_01472 0.67 +0.1
1,543,705 + MPMX20_01472 0.68 -0.4
1,543,715 + MPMX20_01472 0.70 -0.6
1,543,725 + MPMX20_01472 0.71 -1.0
1,543,764 + MPMX20_01472 0.75 -1.3
1,543,934 + -0.6
1,544,112 + -1.9
1,544,120 - -0.3
1,544,277 + MPMX20_01473 0.18 -0.2
1,544,300 + MPMX20_01473 0.19 -0.7
1,544,300 + MPMX20_01473 0.19 -1.0
1,544,308 - MPMX20_01473 0.20 -0.4
1,544,383 + MPMX20_01473 0.26 +0.8
1,544,383 + MPMX20_01473 0.26 +1.4
1,544,383 + MPMX20_01473 0.26 -1.0
1,544,383 + MPMX20_01473 0.26 -0.4
1,544,383 + MPMX20_01473 0.26 -0.4
1,544,391 - MPMX20_01473 0.26 -0.7
1,544,391 - MPMX20_01473 0.26 +0.5
1,544,391 - MPMX20_01473 0.26 -1.0
1,544,454 + MPMX20_01473 0.31 -1.8
1,544,481 - MPMX20_01473 0.33 +0.9
1,544,509 - MPMX20_01473 0.35 -0.8
1,544,548 - MPMX20_01473 0.38 -0.3
1,544,633 + MPMX20_01473 0.44 +0.0
1,544,740 + MPMX20_01473 0.52 +3.2
1,544,806 - MPMX20_01473 0.57 -0.2
1,544,816 - MPMX20_01473 0.58 +0.1
1,544,825 + MPMX20_01473 0.59 -2.2
1,544,842 + MPMX20_01473 0.60 -0.7
1,544,856 - MPMX20_01473 0.61 -1.7
1,544,892 + MPMX20_01473 0.64 +1.2
1,544,892 + MPMX20_01473 0.64 -0.9
1,544,900 - MPMX20_01473 0.65 -1.1
1,544,906 + MPMX20_01473 0.65 -0.8
1,544,914 - MPMX20_01473 0.66 -1.4

Or see this region's nucleotide sequence