Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01385 and MPMX20_01386 are separated by 9 nucleotides MPMX20_01386 and MPMX20_01387 are separated by 202 nucleotides
MPMX20_01385: MPMX20_01385 - Galactose-1-phosphate uridylyltransferase, at 1,447,277 to 1,448,323
_01385
MPMX20_01386: MPMX20_01386 - UDP-glucose 4-epimerase, at 1,448,333 to 1,449,349
_01386
MPMX20_01387: MPMX20_01387 - ABC transporter ATP-binding protein ModF, at 1,449,552 to 1,451,024
_01387
Position (kb)
1448
1449
1450 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1447.336 kb on + strand at 1447.407 kb on - strand, within MPMX20_01385 at 1447.417 kb on - strand, within MPMX20_01385 at 1447.466 kb on + strand, within MPMX20_01385 at 1447.469 kb on + strand, within MPMX20_01385 at 1447.472 kb on - strand, within MPMX20_01385 at 1447.474 kb on - strand, within MPMX20_01385 at 1447.509 kb on + strand, within MPMX20_01385 at 1447.519 kb on + strand, within MPMX20_01385 at 1447.527 kb on - strand, within MPMX20_01385 at 1447.564 kb on - strand, within MPMX20_01385 at 1447.573 kb on + strand, within MPMX20_01385 at 1447.593 kb on - strand, within MPMX20_01385 at 1447.677 kb on + strand, within MPMX20_01385 at 1447.716 kb on - strand, within MPMX20_01385 at 1447.718 kb on + strand, within MPMX20_01385 at 1447.775 kb on + strand, within MPMX20_01385 at 1447.809 kb on - strand, within MPMX20_01385 at 1447.812 kb on + strand, within MPMX20_01385 at 1447.812 kb on + strand, within MPMX20_01385 at 1447.817 kb on + strand, within MPMX20_01385 at 1447.837 kb on + strand, within MPMX20_01385 at 1447.837 kb on + strand, within MPMX20_01385 at 1447.837 kb on + strand, within MPMX20_01385 at 1447.837 kb on + strand, within MPMX20_01385 at 1447.837 kb on + strand, within MPMX20_01385 at 1447.837 kb on + strand, within MPMX20_01385 at 1447.845 kb on - strand, within MPMX20_01385 at 1447.845 kb on - strand, within MPMX20_01385 at 1447.845 kb on - strand, within MPMX20_01385 at 1447.845 kb on - strand, within MPMX20_01385 at 1447.845 kb on - strand, within MPMX20_01385 at 1447.845 kb on - strand, within MPMX20_01385 at 1447.855 kb on - strand, within MPMX20_01385 at 1447.876 kb on + strand, within MPMX20_01385 at 1447.882 kb on - strand, within MPMX20_01385 at 1447.884 kb on - strand, within MPMX20_01385 at 1447.884 kb on - strand, within MPMX20_01385 at 1447.893 kb on + strand, within MPMX20_01385 at 1447.893 kb on + strand, within MPMX20_01385 at 1447.895 kb on - strand, within MPMX20_01385 at 1447.903 kb on + strand, within MPMX20_01385 at 1447.903 kb on + strand, within MPMX20_01385 at 1447.903 kb on + strand, within MPMX20_01385 at 1447.911 kb on - strand, within MPMX20_01385 at 1447.911 kb on - strand, within MPMX20_01385 at 1447.926 kb on + strand, within MPMX20_01385 at 1448.004 kb on - strand, within MPMX20_01385 at 1448.183 kb on - strand, within MPMX20_01385 at 1448.209 kb on + strand, within MPMX20_01385 at 1448.223 kb on + strand at 1448.278 kb on + strand at 1448.345 kb on + strand at 1448.502 kb on + strand, within MPMX20_01386 at 1448.537 kb on + strand, within MPMX20_01386 at 1448.537 kb on - strand, within MPMX20_01386 at 1448.545 kb on - strand, within MPMX20_01386 at 1448.570 kb on - strand, within MPMX20_01386 at 1448.592 kb on - strand, within MPMX20_01386 at 1448.635 kb on + strand, within MPMX20_01386 at 1448.638 kb on - strand, within MPMX20_01386 at 1448.662 kb on + strand, within MPMX20_01386 at 1448.662 kb on + strand, within MPMX20_01386 at 1448.664 kb on + strand, within MPMX20_01386 at 1448.664 kb on + strand, within MPMX20_01386 at 1448.665 kb on - strand, within MPMX20_01386 at 1448.670 kb on - strand, within MPMX20_01386 at 1448.670 kb on - strand, within MPMX20_01386 at 1448.670 kb on - strand, within MPMX20_01386 at 1448.746 kb on + strand, within MPMX20_01386 at 1448.765 kb on + strand, within MPMX20_01386 at 1448.790 kb on + strand, within MPMX20_01386 at 1448.810 kb on - strand, within MPMX20_01386 at 1448.812 kb on + strand, within MPMX20_01386 at 1448.832 kb on + strand, within MPMX20_01386 at 1448.868 kb on + strand, within MPMX20_01386 at 1448.933 kb on - strand, within MPMX20_01386 at 1449.089 kb on + strand, within MPMX20_01386 at 1449.191 kb on + strand, within MPMX20_01386 at 1449.243 kb on + strand, within MPMX20_01386 at 1449.305 kb on - strand at 1449.388 kb on + strand at 1449.534 kb on + strand at 1449.542 kb on - strand at 1449.681 kb on + strand at 1449.689 kb on - strand at 1449.700 kb on + strand, within MPMX20_01387 at 1449.726 kb on + strand, within MPMX20_01387 at 1449.733 kb on - strand, within MPMX20_01387 at 1449.734 kb on - strand, within MPMX20_01387 at 1449.734 kb on - strand, within MPMX20_01387 at 1449.734 kb on - strand, within MPMX20_01387 at 1449.735 kb on + strand, within MPMX20_01387 at 1449.762 kb on + strand, within MPMX20_01387 at 1449.777 kb on - strand, within MPMX20_01387 at 1449.794 kb on + strand, within MPMX20_01387 at 1449.804 kb on + strand, within MPMX20_01387 at 1449.886 kb on + strand, within MPMX20_01387 at 1449.894 kb on - strand, within MPMX20_01387 at 1449.894 kb on - strand, within MPMX20_01387 at 1449.947 kb on + strand, within MPMX20_01387 at 1449.952 kb on + strand, within MPMX20_01387 at 1449.955 kb on - strand, within MPMX20_01387 at 1449.960 kb on - strand, within MPMX20_01387 at 1449.962 kb on + strand, within MPMX20_01387 at 1449.962 kb on + strand, within MPMX20_01387 at 1449.962 kb on + strand, within MPMX20_01387 at 1449.975 kb on - strand, within MPMX20_01387 at 1449.975 kb on - strand, within MPMX20_01387 at 1450.067 kb on + strand, within MPMX20_01387 at 1450.075 kb on - strand, within MPMX20_01387 at 1450.087 kb on + strand, within MPMX20_01387 at 1450.201 kb on - strand, within MPMX20_01387 at 1450.238 kb on + strand, within MPMX20_01387 at 1450.301 kb on + strand, within MPMX20_01387 at 1450.301 kb on + strand, within MPMX20_01387 at 1450.316 kb on + strand, within MPMX20_01387
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,447,336 + -0.8 1,447,407 - MPMX20_01385 0.12 +0.1 1,447,417 - MPMX20_01385 0.13 -0.8 1,447,466 + MPMX20_01385 0.18 -1.2 1,447,469 + MPMX20_01385 0.18 +0.4 1,447,472 - MPMX20_01385 0.19 -1.7 1,447,474 - MPMX20_01385 0.19 -0.7 1,447,509 + MPMX20_01385 0.22 +0.5 1,447,519 + MPMX20_01385 0.23 +1.4 1,447,527 - MPMX20_01385 0.24 -2.7 1,447,564 - MPMX20_01385 0.27 -1.1 1,447,573 + MPMX20_01385 0.28 -1.2 1,447,593 - MPMX20_01385 0.30 -1.7 1,447,677 + MPMX20_01385 0.38 +0.2 1,447,716 - MPMX20_01385 0.42 -1.6 1,447,718 + MPMX20_01385 0.42 -1.3 1,447,775 + MPMX20_01385 0.48 -1.9 1,447,809 - MPMX20_01385 0.51 -1.1 1,447,812 + MPMX20_01385 0.51 +0.2 1,447,812 + MPMX20_01385 0.51 -0.9 1,447,817 + MPMX20_01385 0.52 -0.7 1,447,837 + MPMX20_01385 0.53 +0.7 1,447,837 + MPMX20_01385 0.53 -0.2 1,447,837 + MPMX20_01385 0.53 -0.5 1,447,837 + MPMX20_01385 0.53 -1.6 1,447,837 + MPMX20_01385 0.53 +0.8 1,447,837 + MPMX20_01385 0.53 +0.9 1,447,845 - MPMX20_01385 0.54 +0.3 1,447,845 - MPMX20_01385 0.54 +0.6 1,447,845 - MPMX20_01385 0.54 +2.2 1,447,845 - MPMX20_01385 0.54 -1.0 1,447,845 - MPMX20_01385 0.54 -0.4 1,447,845 - MPMX20_01385 0.54 -1.1 1,447,855 - MPMX20_01385 0.55 -1.5 1,447,876 + MPMX20_01385 0.57 -1.0 1,447,882 - MPMX20_01385 0.58 -1.7 1,447,884 - MPMX20_01385 0.58 -1.8 1,447,884 - MPMX20_01385 0.58 -1.2 1,447,893 + MPMX20_01385 0.59 +0.4 1,447,893 + MPMX20_01385 0.59 +0.0 1,447,895 - MPMX20_01385 0.59 -0.6 1,447,903 + MPMX20_01385 0.60 +0.1 1,447,903 + MPMX20_01385 0.60 -0.4 1,447,903 + MPMX20_01385 0.60 +0.6 1,447,911 - MPMX20_01385 0.61 -1.4 1,447,911 - MPMX20_01385 0.61 -1.2 1,447,926 + MPMX20_01385 0.62 -0.4 1,448,004 - MPMX20_01385 0.69 +0.5 1,448,183 - MPMX20_01385 0.87 +0.0 1,448,209 + MPMX20_01385 0.89 -1.8 1,448,223 + +1.6 1,448,278 + +0.1 1,448,345 + +0.3 1,448,502 + MPMX20_01386 0.17 -0.7 1,448,537 + MPMX20_01386 0.20 +1.6 1,448,537 - MPMX20_01386 0.20 +0.3 1,448,545 - MPMX20_01386 0.21 -1.8 1,448,570 - MPMX20_01386 0.23 +0.3 1,448,592 - MPMX20_01386 0.25 -1.7 1,448,635 + MPMX20_01386 0.30 -1.8 1,448,638 - MPMX20_01386 0.30 +0.9 1,448,662 + MPMX20_01386 0.32 -1.1 1,448,662 + MPMX20_01386 0.32 +0.0 1,448,664 + MPMX20_01386 0.33 -0.8 1,448,664 + MPMX20_01386 0.33 -2.2 1,448,665 - MPMX20_01386 0.33 -2.2 1,448,670 - MPMX20_01386 0.33 +0.6 1,448,670 - MPMX20_01386 0.33 +0.5 1,448,670 - MPMX20_01386 0.33 -0.4 1,448,746 + MPMX20_01386 0.41 -1.0 1,448,765 + MPMX20_01386 0.42 -0.9 1,448,790 + MPMX20_01386 0.45 -0.9 1,448,810 - MPMX20_01386 0.47 -0.8 1,448,812 + MPMX20_01386 0.47 -2.7 1,448,832 + MPMX20_01386 0.49 -2.0 1,448,868 + MPMX20_01386 0.53 -1.2 1,448,933 - MPMX20_01386 0.59 -1.9 1,449,089 + MPMX20_01386 0.74 -0.8 1,449,191 + MPMX20_01386 0.84 +0.2 1,449,243 + MPMX20_01386 0.89 +1.5 1,449,305 - +1.0 1,449,388 + -3.8 1,449,534 + -0.4 1,449,542 - -0.2 1,449,681 + -0.4 1,449,689 - +0.7 1,449,700 + MPMX20_01387 0.10 +0.9 1,449,726 + MPMX20_01387 0.12 -0.8 1,449,733 - MPMX20_01387 0.12 -0.7 1,449,734 - MPMX20_01387 0.12 -1.9 1,449,734 - MPMX20_01387 0.12 +2.5 1,449,734 - MPMX20_01387 0.12 +1.1 1,449,735 + MPMX20_01387 0.12 +1.2 1,449,762 + MPMX20_01387 0.14 +1.4 1,449,777 - MPMX20_01387 0.15 +0.1 1,449,794 + MPMX20_01387 0.16 -0.3 1,449,804 + MPMX20_01387 0.17 -0.1 1,449,886 + MPMX20_01387 0.23 -1.2 1,449,894 - MPMX20_01387 0.23 -2.1 1,449,894 - MPMX20_01387 0.23 +0.3 1,449,947 + MPMX20_01387 0.27 -0.0 1,449,952 + MPMX20_01387 0.27 +1.2 1,449,955 - MPMX20_01387 0.27 -0.1 1,449,960 - MPMX20_01387 0.28 +1.0 1,449,962 + MPMX20_01387 0.28 +0.1 1,449,962 + MPMX20_01387 0.28 +1.2 1,449,962 + MPMX20_01387 0.28 +0.4 1,449,975 - MPMX20_01387 0.29 -0.5 1,449,975 - MPMX20_01387 0.29 -1.7 1,450,067 + MPMX20_01387 0.35 +2.2 1,450,075 - MPMX20_01387 0.36 -0.0 1,450,087 + MPMX20_01387 0.36 +0.4 1,450,201 - MPMX20_01387 0.44 +0.6 1,450,238 + MPMX20_01387 0.47 +0.2 1,450,301 + MPMX20_01387 0.51 +0.2 1,450,301 + MPMX20_01387 0.51 -0.8 1,450,316 + MPMX20_01387 0.52 -0.5
Or see this region's nucleotide sequence