Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01347 and MPMX20_01348 are separated by 21 nucleotides MPMX20_01348 and MPMX20_01349 are separated by 100 nucleotides MPMX20_01349 and MPMX20_01350 are separated by 557 nucleotides
MPMX20_01347: MPMX20_01347 - 5-oxoprolinase subunit A, at 1,410,171 to 1,410,908
_01347
MPMX20_01348: MPMX20_01348 - Endonuclease 8, at 1,410,930 to 1,411,721
_01348
MPMX20_01349: MPMX20_01349 - Citrate synthase, at 1,411,822 to 1,413,105
_01349
MPMX20_01350: MPMX20_01350 - Succinate dehydrogenase cytochrome b556 subunit, at 1,413,663 to 1,414,151
_01350
Position (kb)
1411
1412
1413
1414 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1410.887 kb on + strand at 1410.887 kb on + strand at 1410.890 kb on - strand at 1410.895 kb on - strand at 1410.917 kb on - strand at 1410.967 kb on + strand at 1410.967 kb on + strand at 1410.976 kb on - strand at 1411.201 kb on + strand, within MPMX20_01348 at 1411.207 kb on + strand, within MPMX20_01348 at 1411.223 kb on + strand, within MPMX20_01348 at 1411.235 kb on + strand, within MPMX20_01348 at 1411.235 kb on + strand, within MPMX20_01348 at 1411.293 kb on + strand, within MPMX20_01348 at 1411.342 kb on - strand, within MPMX20_01348 at 1411.347 kb on + strand, within MPMX20_01348 at 1411.456 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.481 kb on + strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.489 kb on - strand, within MPMX20_01348 at 1411.519 kb on - strand, within MPMX20_01348 at 1411.600 kb on - strand, within MPMX20_01348 at 1411.600 kb on - strand, within MPMX20_01348 at 1411.609 kb on + strand, within MPMX20_01348 at 1411.617 kb on - strand, within MPMX20_01348 at 1411.642 kb on - strand at 1411.679 kb on + strand at 1411.682 kb on + strand at 1411.738 kb on - strand at 1411.738 kb on - strand at 1411.738 kb on - strand at 1411.744 kb on - strand at 1411.744 kb on - strand at 1411.744 kb on - strand at 1411.744 kb on - strand at 1411.774 kb on + strand at 1411.782 kb on - strand at 1411.799 kb on - strand at 1411.807 kb on - strand at 1411.812 kb on - strand at 1411.862 kb on - strand at 1411.865 kb on + strand at 1411.865 kb on + strand at 1411.865 kb on + strand at 1411.865 kb on + strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1411.873 kb on - strand at 1412.041 kb on - strand, within MPMX20_01349 at 1412.081 kb on - strand, within MPMX20_01349 at 1412.108 kb on + strand, within MPMX20_01349 at 1412.113 kb on + strand, within MPMX20_01349 at 1412.157 kb on - strand, within MPMX20_01349 at 1412.160 kb on + strand, within MPMX20_01349 at 1412.272 kb on - strand, within MPMX20_01349 at 1412.284 kb on + strand, within MPMX20_01349 at 1412.307 kb on - strand, within MPMX20_01349 at 1412.326 kb on - strand, within MPMX20_01349 at 1412.329 kb on - strand, within MPMX20_01349 at 1412.530 kb on - strand, within MPMX20_01349 at 1412.676 kb on - strand, within MPMX20_01349 at 1412.701 kb on + strand, within MPMX20_01349 at 1412.743 kb on - strand, within MPMX20_01349 at 1412.848 kb on - strand, within MPMX20_01349 at 1412.848 kb on - strand, within MPMX20_01349 at 1412.858 kb on - strand, within MPMX20_01349 at 1412.888 kb on + strand, within MPMX20_01349 at 1412.983 kb on + strand at 1413.004 kb on - strand at 1413.083 kb on + strand at 1413.115 kb on + strand at 1413.115 kb on + strand at 1413.123 kb on - strand at 1413.123 kb on - strand at 1413.130 kb on + strand at 1413.138 kb on - strand at 1413.138 kb on - strand at 1413.171 kb on - strand at 1413.216 kb on + strand at 1413.228 kb on + strand at 1413.228 kb on + strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.236 kb on - strand at 1413.328 kb on - strand at 1413.340 kb on - strand at 1413.359 kb on + strand at 1413.401 kb on + strand at 1413.597 kb on + strand at 1413.609 kb on + strand at 1413.734 kb on + strand, within MPMX20_01350 at 1413.837 kb on - strand, within MPMX20_01350 at 1413.901 kb on - strand, within MPMX20_01350 at 1413.936 kb on + strand, within MPMX20_01350 at 1413.944 kb on - strand, within MPMX20_01350 at 1413.944 kb on - strand, within MPMX20_01350 at 1413.951 kb on + strand, within MPMX20_01350 at 1414.062 kb on - strand, within MPMX20_01350 at 1414.077 kb on + strand, within MPMX20_01350
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,410,887 + -0.1 1,410,887 + -0.1 1,410,890 - -0.3 1,410,895 - +0.6 1,410,917 - +0.3 1,410,967 + -1.4 1,410,967 + -2.0 1,410,976 - +0.0 1,411,201 + MPMX20_01348 0.34 -1.0 1,411,207 + MPMX20_01348 0.35 +1.2 1,411,223 + MPMX20_01348 0.37 -0.7 1,411,235 + MPMX20_01348 0.39 -1.0 1,411,235 + MPMX20_01348 0.39 +0.6 1,411,293 + MPMX20_01348 0.46 -0.4 1,411,342 - MPMX20_01348 0.52 +0.2 1,411,347 + MPMX20_01348 0.53 -0.8 1,411,456 + MPMX20_01348 0.66 -0.5 1,411,481 + MPMX20_01348 0.70 -0.8 1,411,481 + MPMX20_01348 0.70 +0.8 1,411,481 + MPMX20_01348 0.70 +0.6 1,411,481 + MPMX20_01348 0.70 +0.7 1,411,481 + MPMX20_01348 0.70 -0.6 1,411,481 + MPMX20_01348 0.70 +0.8 1,411,481 + MPMX20_01348 0.70 -0.6 1,411,489 - MPMX20_01348 0.71 -2.8 1,411,489 - MPMX20_01348 0.71 -1.5 1,411,489 - MPMX20_01348 0.71 -0.8 1,411,489 - MPMX20_01348 0.71 +0.9 1,411,489 - MPMX20_01348 0.71 -0.4 1,411,489 - MPMX20_01348 0.71 +0.0 1,411,489 - MPMX20_01348 0.71 -0.4 1,411,489 - MPMX20_01348 0.71 +1.0 1,411,519 - MPMX20_01348 0.74 -0.6 1,411,600 - MPMX20_01348 0.85 +0.9 1,411,600 - MPMX20_01348 0.85 -0.8 1,411,609 + MPMX20_01348 0.86 -0.2 1,411,617 - MPMX20_01348 0.87 +0.3 1,411,642 - -0.9 1,411,679 + -0.0 1,411,682 + -1.0 1,411,738 - -0.9 1,411,738 - -2.5 1,411,738 - -1.8 1,411,744 - -0.4 1,411,744 - -1.2 1,411,744 - -0.1 1,411,744 - -1.2 1,411,774 + -1.9 1,411,782 - +5.0 1,411,799 - +1.6 1,411,807 - -1.2 1,411,812 - -1.7 1,411,862 - -0.4 1,411,865 + -2.1 1,411,865 + -3.2 1,411,865 + -1.8 1,411,865 + +0.5 1,411,873 - -1.3 1,411,873 - -1.8 1,411,873 - -1.4 1,411,873 - -2.3 1,411,873 - -2.3 1,412,041 - MPMX20_01349 0.17 -2.1 1,412,081 - MPMX20_01349 0.20 -2.8 1,412,108 + MPMX20_01349 0.22 -2.0 1,412,113 + MPMX20_01349 0.23 -1.8 1,412,157 - MPMX20_01349 0.26 +0.2 1,412,160 + MPMX20_01349 0.26 -2.4 1,412,272 - MPMX20_01349 0.35 +0.1 1,412,284 + MPMX20_01349 0.36 +1.2 1,412,307 - MPMX20_01349 0.38 -2.5 1,412,326 - MPMX20_01349 0.39 +0.2 1,412,329 - MPMX20_01349 0.39 -0.8 1,412,530 - MPMX20_01349 0.55 -1.0 1,412,676 - MPMX20_01349 0.67 +0.6 1,412,701 + MPMX20_01349 0.68 -2.1 1,412,743 - MPMX20_01349 0.72 -1.7 1,412,848 - MPMX20_01349 0.80 -0.4 1,412,848 - MPMX20_01349 0.80 -2.5 1,412,858 - MPMX20_01349 0.81 -0.4 1,412,888 + MPMX20_01349 0.83 -0.2 1,412,983 + -3.2 1,413,004 - -3.1 1,413,083 + -0.6 1,413,115 + -1.1 1,413,115 + -0.5 1,413,123 - -0.3 1,413,123 - -2.2 1,413,130 + +0.3 1,413,138 - -0.4 1,413,138 - -2.4 1,413,171 - -1.5 1,413,216 + -1.2 1,413,228 + -1.6 1,413,228 + -1.6 1,413,236 - -2.9 1,413,236 - -2.0 1,413,236 - -2.1 1,413,236 - -3.0 1,413,236 - -2.5 1,413,328 - +0.1 1,413,340 - +3.0 1,413,359 + +0.6 1,413,401 + -0.4 1,413,597 + -2.2 1,413,609 + -2.8 1,413,734 + MPMX20_01350 0.15 -2.0 1,413,837 - MPMX20_01350 0.36 -2.4 1,413,901 - MPMX20_01350 0.49 +0.4 1,413,936 + MPMX20_01350 0.56 -1.0 1,413,944 - MPMX20_01350 0.57 -1.5 1,413,944 - MPMX20_01350 0.57 -2.7 1,413,951 + MPMX20_01350 0.59 -0.1 1,414,062 - MPMX20_01350 0.82 -0.6 1,414,077 + MPMX20_01350 0.85 -1.2
Or see this region's nucleotide sequence