Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01349

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01347 and MPMX20_01348 are separated by 21 nucleotidesMPMX20_01348 and MPMX20_01349 are separated by 100 nucleotidesMPMX20_01349 and MPMX20_01350 are separated by 557 nucleotides MPMX20_01347: MPMX20_01347 - 5-oxoprolinase subunit A, at 1,410,171 to 1,410,908 _01347 MPMX20_01348: MPMX20_01348 - Endonuclease 8, at 1,410,930 to 1,411,721 _01348 MPMX20_01349: MPMX20_01349 - Citrate synthase, at 1,411,822 to 1,413,105 _01349 MPMX20_01350: MPMX20_01350 - Succinate dehydrogenase cytochrome b556 subunit, at 1,413,663 to 1,414,151 _01350 Position (kb) 1411 1412 1413 1414Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1410.887 kb on + strandat 1410.887 kb on + strandat 1410.890 kb on - strandat 1410.895 kb on - strandat 1410.917 kb on - strandat 1410.967 kb on + strandat 1410.967 kb on + strandat 1410.976 kb on - strandat 1411.201 kb on + strand, within MPMX20_01348at 1411.207 kb on + strand, within MPMX20_01348at 1411.223 kb on + strand, within MPMX20_01348at 1411.235 kb on + strand, within MPMX20_01348at 1411.235 kb on + strand, within MPMX20_01348at 1411.293 kb on + strand, within MPMX20_01348at 1411.342 kb on - strand, within MPMX20_01348at 1411.347 kb on + strand, within MPMX20_01348at 1411.456 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.481 kb on + strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.489 kb on - strand, within MPMX20_01348at 1411.519 kb on - strand, within MPMX20_01348at 1411.600 kb on - strand, within MPMX20_01348at 1411.600 kb on - strand, within MPMX20_01348at 1411.609 kb on + strand, within MPMX20_01348at 1411.617 kb on - strand, within MPMX20_01348at 1411.642 kb on - strandat 1411.679 kb on + strandat 1411.682 kb on + strandat 1411.738 kb on - strandat 1411.738 kb on - strandat 1411.738 kb on - strandat 1411.744 kb on - strandat 1411.744 kb on - strandat 1411.744 kb on - strandat 1411.744 kb on - strandat 1411.774 kb on + strandat 1411.782 kb on - strandat 1411.799 kb on - strandat 1411.807 kb on - strandat 1411.812 kb on - strandat 1411.862 kb on - strandat 1411.865 kb on + strandat 1411.865 kb on + strandat 1411.865 kb on + strandat 1411.865 kb on + strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1411.873 kb on - strandat 1412.041 kb on - strand, within MPMX20_01349at 1412.081 kb on - strand, within MPMX20_01349at 1412.108 kb on + strand, within MPMX20_01349at 1412.113 kb on + strand, within MPMX20_01349at 1412.157 kb on - strand, within MPMX20_01349at 1412.160 kb on + strand, within MPMX20_01349at 1412.272 kb on - strand, within MPMX20_01349at 1412.284 kb on + strand, within MPMX20_01349at 1412.307 kb on - strand, within MPMX20_01349at 1412.326 kb on - strand, within MPMX20_01349at 1412.329 kb on - strand, within MPMX20_01349at 1412.530 kb on - strand, within MPMX20_01349at 1412.676 kb on - strand, within MPMX20_01349at 1412.701 kb on + strand, within MPMX20_01349at 1412.743 kb on - strand, within MPMX20_01349at 1412.848 kb on - strand, within MPMX20_01349at 1412.848 kb on - strand, within MPMX20_01349at 1412.858 kb on - strand, within MPMX20_01349at 1412.888 kb on + strand, within MPMX20_01349at 1412.983 kb on + strandat 1413.004 kb on - strandat 1413.083 kb on + strandat 1413.115 kb on + strandat 1413.115 kb on + strandat 1413.123 kb on - strandat 1413.123 kb on - strandat 1413.130 kb on + strandat 1413.138 kb on - strandat 1413.138 kb on - strandat 1413.171 kb on - strandat 1413.216 kb on + strandat 1413.228 kb on + strandat 1413.228 kb on + strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.236 kb on - strandat 1413.328 kb on - strandat 1413.340 kb on - strandat 1413.359 kb on + strandat 1413.401 kb on + strandat 1413.597 kb on + strandat 1413.609 kb on + strandat 1413.734 kb on + strand, within MPMX20_01350at 1413.837 kb on - strand, within MPMX20_01350at 1413.901 kb on - strand, within MPMX20_01350at 1413.936 kb on + strand, within MPMX20_01350at 1413.944 kb on - strand, within MPMX20_01350at 1413.944 kb on - strand, within MPMX20_01350at 1413.951 kb on + strand, within MPMX20_01350at 1414.062 kb on - strand, within MPMX20_01350at 1414.077 kb on + strand, within MPMX20_01350

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,410,887 + -0.1
1,410,887 + -0.1
1,410,890 - -0.3
1,410,895 - +0.6
1,410,917 - +0.3
1,410,967 + -1.4
1,410,967 + -2.0
1,410,976 - +0.0
1,411,201 + MPMX20_01348 0.34 -1.0
1,411,207 + MPMX20_01348 0.35 +1.2
1,411,223 + MPMX20_01348 0.37 -0.7
1,411,235 + MPMX20_01348 0.39 -1.0
1,411,235 + MPMX20_01348 0.39 +0.6
1,411,293 + MPMX20_01348 0.46 -0.4
1,411,342 - MPMX20_01348 0.52 +0.2
1,411,347 + MPMX20_01348 0.53 -0.8
1,411,456 + MPMX20_01348 0.66 -0.5
1,411,481 + MPMX20_01348 0.70 -0.8
1,411,481 + MPMX20_01348 0.70 +0.8
1,411,481 + MPMX20_01348 0.70 +0.6
1,411,481 + MPMX20_01348 0.70 +0.7
1,411,481 + MPMX20_01348 0.70 -0.6
1,411,481 + MPMX20_01348 0.70 +0.8
1,411,481 + MPMX20_01348 0.70 -0.6
1,411,489 - MPMX20_01348 0.71 -2.8
1,411,489 - MPMX20_01348 0.71 -1.5
1,411,489 - MPMX20_01348 0.71 -0.8
1,411,489 - MPMX20_01348 0.71 +0.9
1,411,489 - MPMX20_01348 0.71 -0.4
1,411,489 - MPMX20_01348 0.71 +0.0
1,411,489 - MPMX20_01348 0.71 -0.4
1,411,489 - MPMX20_01348 0.71 +1.0
1,411,519 - MPMX20_01348 0.74 -0.6
1,411,600 - MPMX20_01348 0.85 +0.9
1,411,600 - MPMX20_01348 0.85 -0.8
1,411,609 + MPMX20_01348 0.86 -0.2
1,411,617 - MPMX20_01348 0.87 +0.3
1,411,642 - -0.9
1,411,679 + -0.0
1,411,682 + -1.0
1,411,738 - -0.9
1,411,738 - -2.5
1,411,738 - -1.8
1,411,744 - -0.4
1,411,744 - -1.2
1,411,744 - -0.1
1,411,744 - -1.2
1,411,774 + -1.9
1,411,782 - +5.0
1,411,799 - +1.6
1,411,807 - -1.2
1,411,812 - -1.7
1,411,862 - -0.4
1,411,865 + -2.1
1,411,865 + -3.2
1,411,865 + -1.8
1,411,865 + +0.5
1,411,873 - -1.3
1,411,873 - -1.8
1,411,873 - -1.4
1,411,873 - -2.3
1,411,873 - -2.3
1,412,041 - MPMX20_01349 0.17 -2.1
1,412,081 - MPMX20_01349 0.20 -2.8
1,412,108 + MPMX20_01349 0.22 -2.0
1,412,113 + MPMX20_01349 0.23 -1.8
1,412,157 - MPMX20_01349 0.26 +0.2
1,412,160 + MPMX20_01349 0.26 -2.4
1,412,272 - MPMX20_01349 0.35 +0.1
1,412,284 + MPMX20_01349 0.36 +1.2
1,412,307 - MPMX20_01349 0.38 -2.5
1,412,326 - MPMX20_01349 0.39 +0.2
1,412,329 - MPMX20_01349 0.39 -0.8
1,412,530 - MPMX20_01349 0.55 -1.0
1,412,676 - MPMX20_01349 0.67 +0.6
1,412,701 + MPMX20_01349 0.68 -2.1
1,412,743 - MPMX20_01349 0.72 -1.7
1,412,848 - MPMX20_01349 0.80 -0.4
1,412,848 - MPMX20_01349 0.80 -2.5
1,412,858 - MPMX20_01349 0.81 -0.4
1,412,888 + MPMX20_01349 0.83 -0.2
1,412,983 + -3.2
1,413,004 - -3.1
1,413,083 + -0.6
1,413,115 + -1.1
1,413,115 + -0.5
1,413,123 - -0.3
1,413,123 - -2.2
1,413,130 + +0.3
1,413,138 - -0.4
1,413,138 - -2.4
1,413,171 - -1.5
1,413,216 + -1.2
1,413,228 + -1.6
1,413,228 + -1.6
1,413,236 - -2.9
1,413,236 - -2.0
1,413,236 - -2.1
1,413,236 - -3.0
1,413,236 - -2.5
1,413,328 - +0.1
1,413,340 - +3.0
1,413,359 + +0.6
1,413,401 + -0.4
1,413,597 + -2.2
1,413,609 + -2.8
1,413,734 + MPMX20_01350 0.15 -2.0
1,413,837 - MPMX20_01350 0.36 -2.4
1,413,901 - MPMX20_01350 0.49 +0.4
1,413,936 + MPMX20_01350 0.56 -1.0
1,413,944 - MPMX20_01350 0.57 -1.5
1,413,944 - MPMX20_01350 0.57 -2.7
1,413,951 + MPMX20_01350 0.59 -0.1
1,414,062 - MPMX20_01350 0.82 -0.6
1,414,077 + MPMX20_01350 0.85 -1.2

Or see this region's nucleotide sequence