Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01323

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01322 and MPMX20_01323 are separated by 8 nucleotidesMPMX20_01323 and MPMX20_01324 are separated by 55 nucleotides MPMX20_01322: MPMX20_01322 - N-acetylglucosamine repressor, at 1,378,807 to 1,380,027 _01322 MPMX20_01323: MPMX20_01323 - N-acetylglucosamine-6-phosphate deacetylase, at 1,380,036 to 1,381,184 _01323 MPMX20_01324: MPMX20_01324 - Glucosamine-6-phosphate deaminase, at 1,381,240 to 1,382,040 _01324 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1379.062 kb on - strand, within MPMX20_01322at 1379.072 kb on - strand, within MPMX20_01322at 1379.095 kb on + strand, within MPMX20_01322at 1379.164 kb on + strand, within MPMX20_01322at 1379.169 kb on + strand, within MPMX20_01322at 1379.176 kb on - strand, within MPMX20_01322at 1379.202 kb on + strand, within MPMX20_01322at 1379.229 kb on + strand, within MPMX20_01322at 1379.287 kb on - strand, within MPMX20_01322at 1379.342 kb on - strand, within MPMX20_01322at 1379.352 kb on + strand, within MPMX20_01322at 1379.360 kb on - strand, within MPMX20_01322at 1379.365 kb on - strand, within MPMX20_01322at 1379.365 kb on - strand, within MPMX20_01322at 1379.395 kb on + strand, within MPMX20_01322at 1379.403 kb on - strand, within MPMX20_01322at 1379.427 kb on + strand, within MPMX20_01322at 1379.451 kb on - strand, within MPMX20_01322at 1379.474 kb on - strand, within MPMX20_01322at 1379.486 kb on + strand, within MPMX20_01322at 1379.486 kb on + strand, within MPMX20_01322at 1379.496 kb on + strand, within MPMX20_01322at 1379.503 kb on + strand, within MPMX20_01322at 1379.562 kb on - strand, within MPMX20_01322at 1379.625 kb on + strand, within MPMX20_01322at 1379.633 kb on + strand, within MPMX20_01322at 1379.633 kb on + strand, within MPMX20_01322at 1379.637 kb on + strand, within MPMX20_01322at 1379.641 kb on - strand, within MPMX20_01322at 1379.641 kb on - strand, within MPMX20_01322at 1379.710 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.724 kb on + strand, within MPMX20_01322at 1379.746 kb on + strand, within MPMX20_01322at 1379.837 kb on + strand, within MPMX20_01322at 1379.887 kb on + strand, within MPMX20_01322at 1379.936 kb on - strandat 1379.936 kb on - strandat 1379.971 kb on + strandat 1379.971 kb on + strandat 1379.977 kb on - strandat 1379.977 kb on - strandat 1379.979 kb on - strandat 1379.979 kb on - strandat 1380.014 kb on - strandat 1380.100 kb on + strandat 1380.121 kb on - strandat 1380.125 kb on + strandat 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.169 kb on + strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.177 kb on - strand, within MPMX20_01323at 1380.178 kb on - strand, within MPMX20_01323at 1380.181 kb on + strand, within MPMX20_01323at 1380.194 kb on - strand, within MPMX20_01323at 1380.194 kb on - strand, within MPMX20_01323at 1380.203 kb on + strand, within MPMX20_01323at 1380.254 kb on + strand, within MPMX20_01323at 1380.399 kb on - strand, within MPMX20_01323at 1380.497 kb on - strand, within MPMX20_01323at 1380.502 kb on - strand, within MPMX20_01323at 1380.502 kb on - strand, within MPMX20_01323at 1380.521 kb on + strand, within MPMX20_01323at 1380.531 kb on + strand, within MPMX20_01323at 1380.534 kb on - strand, within MPMX20_01323at 1380.537 kb on - strand, within MPMX20_01323at 1380.557 kb on - strand, within MPMX20_01323at 1380.557 kb on - strand, within MPMX20_01323at 1380.700 kb on - strand, within MPMX20_01323at 1380.806 kb on - strand, within MPMX20_01323at 1380.815 kb on + strand, within MPMX20_01323at 1380.837 kb on + strand, within MPMX20_01323at 1380.877 kb on - strand, within MPMX20_01323at 1380.877 kb on - strand, within MPMX20_01323at 1380.882 kb on + strand, within MPMX20_01323at 1380.890 kb on - strand, within MPMX20_01323at 1380.893 kb on - strand, within MPMX20_01323at 1380.899 kb on - strand, within MPMX20_01323at 1380.902 kb on + strand, within MPMX20_01323at 1381.000 kb on + strand, within MPMX20_01323at 1381.007 kb on + strand, within MPMX20_01323at 1381.058 kb on + strand, within MPMX20_01323at 1381.066 kb on - strand, within MPMX20_01323at 1381.109 kb on - strandat 1381.153 kb on + strandat 1381.153 kb on + strandat 1381.161 kb on - strandat 1381.161 kb on - strandat 1381.177 kb on - strandat 1381.367 kb on + strand, within MPMX20_01324at 1381.367 kb on + strand, within MPMX20_01324at 1381.375 kb on - strand, within MPMX20_01324at 1381.408 kb on - strand, within MPMX20_01324at 1381.483 kb on - strand, within MPMX20_01324at 1381.492 kb on + strand, within MPMX20_01324at 1381.552 kb on + strand, within MPMX20_01324at 1381.589 kb on - strand, within MPMX20_01324at 1381.589 kb on - strand, within MPMX20_01324at 1381.634 kb on + strand, within MPMX20_01324at 1381.642 kb on - strand, within MPMX20_01324at 1381.781 kb on - strand, within MPMX20_01324at 1381.808 kb on + strand, within MPMX20_01324at 1381.838 kb on - strand, within MPMX20_01324at 1381.845 kb on - strand, within MPMX20_01324at 1381.853 kb on + strand, within MPMX20_01324at 1381.866 kb on - strand, within MPMX20_01324at 1381.973 kb on - strandat 1381.973 kb on - strandat 1381.973 kb on - strandat 1382.061 kb on + strandat 1382.061 kb on + strandat 1382.105 kb on + strandat 1382.105 kb on + strandat 1382.105 kb on + strandat 1382.113 kb on - strandat 1382.114 kb on - strandat 1382.125 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,379,062 - MPMX20_01322 0.21 -0.6
1,379,072 - MPMX20_01322 0.22 +0.1
1,379,095 + MPMX20_01322 0.24 +0.9
1,379,164 + MPMX20_01322 0.29 -0.4
1,379,169 + MPMX20_01322 0.30 +0.6
1,379,176 - MPMX20_01322 0.30 -0.1
1,379,202 + MPMX20_01322 0.32 -2.5
1,379,229 + MPMX20_01322 0.35 -1.3
1,379,287 - MPMX20_01322 0.39 +0.9
1,379,342 - MPMX20_01322 0.44 -0.4
1,379,352 + MPMX20_01322 0.45 -0.2
1,379,360 - MPMX20_01322 0.45 +1.5
1,379,365 - MPMX20_01322 0.46 -1.5
1,379,365 - MPMX20_01322 0.46 +0.9
1,379,395 + MPMX20_01322 0.48 -0.1
1,379,403 - MPMX20_01322 0.49 +0.3
1,379,427 + MPMX20_01322 0.51 -1.7
1,379,451 - MPMX20_01322 0.53 -1.8
1,379,474 - MPMX20_01322 0.55 +0.6
1,379,486 + MPMX20_01322 0.56 -0.3
1,379,486 + MPMX20_01322 0.56 +0.6
1,379,496 + MPMX20_01322 0.56 -0.9
1,379,503 + MPMX20_01322 0.57 +1.2
1,379,562 - MPMX20_01322 0.62 -0.4
1,379,625 + MPMX20_01322 0.67 -0.4
1,379,633 + MPMX20_01322 0.68 +0.7
1,379,633 + MPMX20_01322 0.68 -0.8
1,379,637 + MPMX20_01322 0.68 +0.4
1,379,641 - MPMX20_01322 0.68 +0.4
1,379,641 - MPMX20_01322 0.68 -0.5
1,379,710 + MPMX20_01322 0.74 +1.2
1,379,724 + MPMX20_01322 0.75 -1.6
1,379,724 + MPMX20_01322 0.75 -0.6
1,379,724 + MPMX20_01322 0.75 -0.0
1,379,724 + MPMX20_01322 0.75 +0.6
1,379,746 + MPMX20_01322 0.77 -0.1
1,379,837 + MPMX20_01322 0.84 +1.9
1,379,887 + MPMX20_01322 0.88 -2.6
1,379,936 - +2.2
1,379,936 - -0.8
1,379,971 + -1.0
1,379,971 + -0.4
1,379,977 - -0.3
1,379,977 - -0.1
1,379,979 - -0.6
1,379,979 - -1.8
1,380,014 - +0.6
1,380,100 + -0.9
1,380,121 - -1.0
1,380,125 + +1.0
1,380,169 + MPMX20_01323 0.12 -3.0
1,380,169 + MPMX20_01323 0.12 -2.5
1,380,169 + MPMX20_01323 0.12 -0.6
1,380,169 + MPMX20_01323 0.12 -0.3
1,380,169 + MPMX20_01323 0.12 -0.1
1,380,177 - MPMX20_01323 0.12 +1.8
1,380,177 - MPMX20_01323 0.12 -1.4
1,380,177 - MPMX20_01323 0.12 -0.4
1,380,177 - MPMX20_01323 0.12 -2.9
1,380,177 - MPMX20_01323 0.12 -1.4
1,380,177 - MPMX20_01323 0.12 +0.2
1,380,177 - MPMX20_01323 0.12 +2.2
1,380,177 - MPMX20_01323 0.12 -0.4
1,380,177 - MPMX20_01323 0.12 -0.5
1,380,177 - MPMX20_01323 0.12 +1.2
1,380,177 - MPMX20_01323 0.12 -1.8
1,380,177 - MPMX20_01323 0.12 +0.1
1,380,177 - MPMX20_01323 0.12 -1.8
1,380,178 - MPMX20_01323 0.12 -0.8
1,380,181 + MPMX20_01323 0.13 -2.0
1,380,194 - MPMX20_01323 0.14 -2.8
1,380,194 - MPMX20_01323 0.14 -2.0
1,380,203 + MPMX20_01323 0.15 -1.7
1,380,254 + MPMX20_01323 0.19 -1.2
1,380,399 - MPMX20_01323 0.32 -0.4
1,380,497 - MPMX20_01323 0.40 -0.1
1,380,502 - MPMX20_01323 0.41 -2.0
1,380,502 - MPMX20_01323 0.41 -1.6
1,380,521 + MPMX20_01323 0.42 -3.8
1,380,531 + MPMX20_01323 0.43 -0.4
1,380,534 - MPMX20_01323 0.43 +2.6
1,380,537 - MPMX20_01323 0.44 -1.5
1,380,557 - MPMX20_01323 0.45 -0.5
1,380,557 - MPMX20_01323 0.45 -1.6
1,380,700 - MPMX20_01323 0.58 +0.7
1,380,806 - MPMX20_01323 0.67 +0.1
1,380,815 + MPMX20_01323 0.68 -1.1
1,380,837 + MPMX20_01323 0.70 -0.1
1,380,877 - MPMX20_01323 0.73 -0.1
1,380,877 - MPMX20_01323 0.73 -0.6
1,380,882 + MPMX20_01323 0.74 -0.8
1,380,890 - MPMX20_01323 0.74 -1.2
1,380,893 - MPMX20_01323 0.75 -0.3
1,380,899 - MPMX20_01323 0.75 -1.6
1,380,902 + MPMX20_01323 0.75 -1.9
1,381,000 + MPMX20_01323 0.84 -0.4
1,381,007 + MPMX20_01323 0.85 -2.4
1,381,058 + MPMX20_01323 0.89 +0.6
1,381,066 - MPMX20_01323 0.90 -1.7
1,381,109 - -1.8
1,381,153 + -0.4
1,381,153 + +0.6
1,381,161 - -0.3
1,381,161 - +0.1
1,381,177 - -0.2
1,381,367 + MPMX20_01324 0.16 -1.0
1,381,367 + MPMX20_01324 0.16 -0.9
1,381,375 - MPMX20_01324 0.17 +0.4
1,381,408 - MPMX20_01324 0.21 -0.3
1,381,483 - MPMX20_01324 0.30 -0.6
1,381,492 + MPMX20_01324 0.31 -2.1
1,381,552 + MPMX20_01324 0.39 +1.6
1,381,589 - MPMX20_01324 0.44 +1.3
1,381,589 - MPMX20_01324 0.44 -0.7
1,381,634 + MPMX20_01324 0.49 -1.4
1,381,642 - MPMX20_01324 0.50 +0.4
1,381,781 - MPMX20_01324 0.68 +1.6
1,381,808 + MPMX20_01324 0.71 -0.3
1,381,838 - MPMX20_01324 0.75 -0.3
1,381,845 - MPMX20_01324 0.76 -1.2
1,381,853 + MPMX20_01324 0.77 +1.8
1,381,866 - MPMX20_01324 0.78 +0.9
1,381,973 - -0.2
1,381,973 - -0.4
1,381,973 - -0.1
1,382,061 + +0.3
1,382,061 + -1.4
1,382,105 + -1.7
1,382,105 + -1.2
1,382,105 + -1.9
1,382,113 - +2.8
1,382,114 - -0.8
1,382,125 + -0.4

Or see this region's nucleotide sequence