Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01322 and MPMX20_01323 are separated by 8 nucleotides MPMX20_01323 and MPMX20_01324 are separated by 55 nucleotides
MPMX20_01322: MPMX20_01322 - N-acetylglucosamine repressor, at 1,378,807 to 1,380,027
_01322
MPMX20_01323: MPMX20_01323 - N-acetylglucosamine-6-phosphate deacetylase, at 1,380,036 to 1,381,184
_01323
MPMX20_01324: MPMX20_01324 - Glucosamine-6-phosphate deaminase, at 1,381,240 to 1,382,040
_01324
Position (kb)
1380
1381
1382 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1379.062 kb on - strand, within MPMX20_01322 at 1379.072 kb on - strand, within MPMX20_01322 at 1379.095 kb on + strand, within MPMX20_01322 at 1379.164 kb on + strand, within MPMX20_01322 at 1379.169 kb on + strand, within MPMX20_01322 at 1379.176 kb on - strand, within MPMX20_01322 at 1379.202 kb on + strand, within MPMX20_01322 at 1379.229 kb on + strand, within MPMX20_01322 at 1379.287 kb on - strand, within MPMX20_01322 at 1379.342 kb on - strand, within MPMX20_01322 at 1379.352 kb on + strand, within MPMX20_01322 at 1379.360 kb on - strand, within MPMX20_01322 at 1379.365 kb on - strand, within MPMX20_01322 at 1379.365 kb on - strand, within MPMX20_01322 at 1379.395 kb on + strand, within MPMX20_01322 at 1379.403 kb on - strand, within MPMX20_01322 at 1379.427 kb on + strand, within MPMX20_01322 at 1379.451 kb on - strand, within MPMX20_01322 at 1379.474 kb on - strand, within MPMX20_01322 at 1379.486 kb on + strand, within MPMX20_01322 at 1379.486 kb on + strand, within MPMX20_01322 at 1379.496 kb on + strand, within MPMX20_01322 at 1379.503 kb on + strand, within MPMX20_01322 at 1379.562 kb on - strand, within MPMX20_01322 at 1379.625 kb on + strand, within MPMX20_01322 at 1379.633 kb on + strand, within MPMX20_01322 at 1379.633 kb on + strand, within MPMX20_01322 at 1379.637 kb on + strand, within MPMX20_01322 at 1379.641 kb on - strand, within MPMX20_01322 at 1379.641 kb on - strand, within MPMX20_01322 at 1379.710 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.724 kb on + strand, within MPMX20_01322 at 1379.746 kb on + strand, within MPMX20_01322 at 1379.837 kb on + strand, within MPMX20_01322 at 1379.887 kb on + strand, within MPMX20_01322 at 1379.936 kb on - strand at 1379.936 kb on - strand at 1379.971 kb on + strand at 1379.971 kb on + strand at 1379.977 kb on - strand at 1379.977 kb on - strand at 1379.979 kb on - strand at 1379.979 kb on - strand at 1380.014 kb on - strand at 1380.100 kb on + strand at 1380.121 kb on - strand at 1380.125 kb on + strand at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.169 kb on + strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.177 kb on - strand, within MPMX20_01323 at 1380.178 kb on - strand, within MPMX20_01323 at 1380.181 kb on + strand, within MPMX20_01323 at 1380.194 kb on - strand, within MPMX20_01323 at 1380.194 kb on - strand, within MPMX20_01323 at 1380.203 kb on + strand, within MPMX20_01323 at 1380.254 kb on + strand, within MPMX20_01323 at 1380.399 kb on - strand, within MPMX20_01323 at 1380.497 kb on - strand, within MPMX20_01323 at 1380.502 kb on - strand, within MPMX20_01323 at 1380.502 kb on - strand, within MPMX20_01323 at 1380.521 kb on + strand, within MPMX20_01323 at 1380.531 kb on + strand, within MPMX20_01323 at 1380.534 kb on - strand, within MPMX20_01323 at 1380.537 kb on - strand, within MPMX20_01323 at 1380.557 kb on - strand, within MPMX20_01323 at 1380.557 kb on - strand, within MPMX20_01323 at 1380.700 kb on - strand, within MPMX20_01323 at 1380.806 kb on - strand, within MPMX20_01323 at 1380.815 kb on + strand, within MPMX20_01323 at 1380.837 kb on + strand, within MPMX20_01323 at 1380.877 kb on - strand, within MPMX20_01323 at 1380.877 kb on - strand, within MPMX20_01323 at 1380.882 kb on + strand, within MPMX20_01323 at 1380.890 kb on - strand, within MPMX20_01323 at 1380.893 kb on - strand, within MPMX20_01323 at 1380.899 kb on - strand, within MPMX20_01323 at 1380.902 kb on + strand, within MPMX20_01323 at 1381.000 kb on + strand, within MPMX20_01323 at 1381.007 kb on + strand, within MPMX20_01323 at 1381.058 kb on + strand, within MPMX20_01323 at 1381.066 kb on - strand, within MPMX20_01323 at 1381.109 kb on - strand at 1381.153 kb on + strand at 1381.153 kb on + strand at 1381.161 kb on - strand at 1381.161 kb on - strand at 1381.177 kb on - strand at 1381.367 kb on + strand, within MPMX20_01324 at 1381.367 kb on + strand, within MPMX20_01324 at 1381.375 kb on - strand, within MPMX20_01324 at 1381.408 kb on - strand, within MPMX20_01324 at 1381.483 kb on - strand, within MPMX20_01324 at 1381.492 kb on + strand, within MPMX20_01324 at 1381.552 kb on + strand, within MPMX20_01324 at 1381.589 kb on - strand, within MPMX20_01324 at 1381.589 kb on - strand, within MPMX20_01324 at 1381.634 kb on + strand, within MPMX20_01324 at 1381.642 kb on - strand, within MPMX20_01324 at 1381.781 kb on - strand, within MPMX20_01324 at 1381.808 kb on + strand, within MPMX20_01324 at 1381.838 kb on - strand, within MPMX20_01324 at 1381.845 kb on - strand, within MPMX20_01324 at 1381.853 kb on + strand, within MPMX20_01324 at 1381.866 kb on - strand, within MPMX20_01324 at 1381.973 kb on - strand at 1381.973 kb on - strand at 1381.973 kb on - strand at 1382.061 kb on + strand at 1382.061 kb on + strand at 1382.105 kb on + strand at 1382.105 kb on + strand at 1382.105 kb on + strand at 1382.113 kb on - strand at 1382.114 kb on - strand at 1382.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,379,062 - MPMX20_01322 0.21 -0.6 1,379,072 - MPMX20_01322 0.22 +0.1 1,379,095 + MPMX20_01322 0.24 +0.9 1,379,164 + MPMX20_01322 0.29 -0.4 1,379,169 + MPMX20_01322 0.30 +0.6 1,379,176 - MPMX20_01322 0.30 -0.1 1,379,202 + MPMX20_01322 0.32 -2.5 1,379,229 + MPMX20_01322 0.35 -1.3 1,379,287 - MPMX20_01322 0.39 +0.9 1,379,342 - MPMX20_01322 0.44 -0.4 1,379,352 + MPMX20_01322 0.45 -0.2 1,379,360 - MPMX20_01322 0.45 +1.5 1,379,365 - MPMX20_01322 0.46 -1.5 1,379,365 - MPMX20_01322 0.46 +0.9 1,379,395 + MPMX20_01322 0.48 -0.1 1,379,403 - MPMX20_01322 0.49 +0.3 1,379,427 + MPMX20_01322 0.51 -1.7 1,379,451 - MPMX20_01322 0.53 -1.8 1,379,474 - MPMX20_01322 0.55 +0.6 1,379,486 + MPMX20_01322 0.56 -0.3 1,379,486 + MPMX20_01322 0.56 +0.6 1,379,496 + MPMX20_01322 0.56 -0.9 1,379,503 + MPMX20_01322 0.57 +1.2 1,379,562 - MPMX20_01322 0.62 -0.4 1,379,625 + MPMX20_01322 0.67 -0.4 1,379,633 + MPMX20_01322 0.68 +0.7 1,379,633 + MPMX20_01322 0.68 -0.8 1,379,637 + MPMX20_01322 0.68 +0.4 1,379,641 - MPMX20_01322 0.68 +0.4 1,379,641 - MPMX20_01322 0.68 -0.5 1,379,710 + MPMX20_01322 0.74 +1.2 1,379,724 + MPMX20_01322 0.75 -1.6 1,379,724 + MPMX20_01322 0.75 -0.6 1,379,724 + MPMX20_01322 0.75 -0.0 1,379,724 + MPMX20_01322 0.75 +0.6 1,379,746 + MPMX20_01322 0.77 -0.1 1,379,837 + MPMX20_01322 0.84 +1.9 1,379,887 + MPMX20_01322 0.88 -2.6 1,379,936 - +2.2 1,379,936 - -0.8 1,379,971 + -1.0 1,379,971 + -0.4 1,379,977 - -0.3 1,379,977 - -0.1 1,379,979 - -0.6 1,379,979 - -1.8 1,380,014 - +0.6 1,380,100 + -0.9 1,380,121 - -1.0 1,380,125 + +1.0 1,380,169 + MPMX20_01323 0.12 -3.0 1,380,169 + MPMX20_01323 0.12 -2.5 1,380,169 + MPMX20_01323 0.12 -0.6 1,380,169 + MPMX20_01323 0.12 -0.3 1,380,169 + MPMX20_01323 0.12 -0.1 1,380,177 - MPMX20_01323 0.12 +1.8 1,380,177 - MPMX20_01323 0.12 -1.4 1,380,177 - MPMX20_01323 0.12 -0.4 1,380,177 - MPMX20_01323 0.12 -2.9 1,380,177 - MPMX20_01323 0.12 -1.4 1,380,177 - MPMX20_01323 0.12 +0.2 1,380,177 - MPMX20_01323 0.12 +2.2 1,380,177 - MPMX20_01323 0.12 -0.4 1,380,177 - MPMX20_01323 0.12 -0.5 1,380,177 - MPMX20_01323 0.12 +1.2 1,380,177 - MPMX20_01323 0.12 -1.8 1,380,177 - MPMX20_01323 0.12 +0.1 1,380,177 - MPMX20_01323 0.12 -1.8 1,380,178 - MPMX20_01323 0.12 -0.8 1,380,181 + MPMX20_01323 0.13 -2.0 1,380,194 - MPMX20_01323 0.14 -2.8 1,380,194 - MPMX20_01323 0.14 -2.0 1,380,203 + MPMX20_01323 0.15 -1.7 1,380,254 + MPMX20_01323 0.19 -1.2 1,380,399 - MPMX20_01323 0.32 -0.4 1,380,497 - MPMX20_01323 0.40 -0.1 1,380,502 - MPMX20_01323 0.41 -2.0 1,380,502 - MPMX20_01323 0.41 -1.6 1,380,521 + MPMX20_01323 0.42 -3.8 1,380,531 + MPMX20_01323 0.43 -0.4 1,380,534 - MPMX20_01323 0.43 +2.6 1,380,537 - MPMX20_01323 0.44 -1.5 1,380,557 - MPMX20_01323 0.45 -0.5 1,380,557 - MPMX20_01323 0.45 -1.6 1,380,700 - MPMX20_01323 0.58 +0.7 1,380,806 - MPMX20_01323 0.67 +0.1 1,380,815 + MPMX20_01323 0.68 -1.1 1,380,837 + MPMX20_01323 0.70 -0.1 1,380,877 - MPMX20_01323 0.73 -0.1 1,380,877 - MPMX20_01323 0.73 -0.6 1,380,882 + MPMX20_01323 0.74 -0.8 1,380,890 - MPMX20_01323 0.74 -1.2 1,380,893 - MPMX20_01323 0.75 -0.3 1,380,899 - MPMX20_01323 0.75 -1.6 1,380,902 + MPMX20_01323 0.75 -1.9 1,381,000 + MPMX20_01323 0.84 -0.4 1,381,007 + MPMX20_01323 0.85 -2.4 1,381,058 + MPMX20_01323 0.89 +0.6 1,381,066 - MPMX20_01323 0.90 -1.7 1,381,109 - -1.8 1,381,153 + -0.4 1,381,153 + +0.6 1,381,161 - -0.3 1,381,161 - +0.1 1,381,177 - -0.2 1,381,367 + MPMX20_01324 0.16 -1.0 1,381,367 + MPMX20_01324 0.16 -0.9 1,381,375 - MPMX20_01324 0.17 +0.4 1,381,408 - MPMX20_01324 0.21 -0.3 1,381,483 - MPMX20_01324 0.30 -0.6 1,381,492 + MPMX20_01324 0.31 -2.1 1,381,552 + MPMX20_01324 0.39 +1.6 1,381,589 - MPMX20_01324 0.44 +1.3 1,381,589 - MPMX20_01324 0.44 -0.7 1,381,634 + MPMX20_01324 0.49 -1.4 1,381,642 - MPMX20_01324 0.50 +0.4 1,381,781 - MPMX20_01324 0.68 +1.6 1,381,808 + MPMX20_01324 0.71 -0.3 1,381,838 - MPMX20_01324 0.75 -0.3 1,381,845 - MPMX20_01324 0.76 -1.2 1,381,853 + MPMX20_01324 0.77 +1.8 1,381,866 - MPMX20_01324 0.78 +0.9 1,381,973 - -0.2 1,381,973 - -0.4 1,381,973 - -0.1 1,382,061 + +0.3 1,382,061 + -1.4 1,382,105 + -1.7 1,382,105 + -1.2 1,382,105 + -1.9 1,382,113 - +2.8 1,382,114 - -0.8 1,382,125 + -0.4
Or see this region's nucleotide sequence