Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00805 and MPMX20_00806 are separated by 537 nucleotides MPMX20_00806 and MPMX20_00807 are separated by 123 nucleotides
MPMX20_00805: MPMX20_00805 - Aromatic amino acid transport protein AroP, at 841,554 to 842,924
_00805
MPMX20_00806: MPMX20_00806 - Pyruvate dehydrogenase complex repressor, at 843,462 to 844,226
_00806
MPMX20_00807: MPMX20_00807 - Pyruvate dehydrogenase E1 component, at 844,350 to 847,013
_00807
Position (kb) 843
844
845 Strain fitness (log2 ratio) -2
-1
0
1
2 at 842.486 kb on + strand, within MPMX20_00805 at 842.504 kb on - strand, within MPMX20_00805 at 842.626 kb on + strand, within MPMX20_00805 at 842.634 kb on + strand, within MPMX20_00805 at 842.673 kb on - strand, within MPMX20_00805 at 842.697 kb on + strand, within MPMX20_00805 at 842.729 kb on - strand, within MPMX20_00805 at 842.818 kb on - strand at 842.845 kb on + strand at 842.848 kb on - strand at 842.867 kb on + strand at 842.872 kb on - strand at 843.143 kb on + strand at 843.326 kb on + strand at 843.342 kb on - strand at 843.359 kb on + strand at 843.385 kb on - strand at 843.761 kb on + strand, within MPMX20_00806 at 843.805 kb on - strand, within MPMX20_00806 at 843.812 kb on + strand, within MPMX20_00806 at 843.812 kb on + strand, within MPMX20_00806 at 843.820 kb on - strand, within MPMX20_00806 at 843.822 kb on + strand, within MPMX20_00806 at 843.822 kb on + strand, within MPMX20_00806 at 843.822 kb on + strand, within MPMX20_00806 at 843.859 kb on + strand, within MPMX20_00806 at 843.966 kb on + strand, within MPMX20_00806 at 843.976 kb on + strand, within MPMX20_00806 at 844.022 kb on + strand, within MPMX20_00806 at 844.112 kb on - strand, within MPMX20_00806 at 844.269 kb on + strand at 844.407 kb on - strand at 844.407 kb on - strand at 844.407 kb on - strand at 844.443 kb on - strand at 844.773 kb on + strand, within MPMX20_00807 at 844.816 kb on - strand, within MPMX20_00807 at 845.008 kb on + strand, within MPMX20_00807 at 845.008 kb on + strand, within MPMX20_00807 at 845.016 kb on - strand, within MPMX20_00807 at 845.016 kb on - strand, within MPMX20_00807 at 845.208 kb on + strand, within MPMX20_00807
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 842,486 + MPMX20_00805 0.68 -1.5 842,504 - MPMX20_00805 0.69 -1.4 842,626 + MPMX20_00805 0.78 +0.4 842,634 + MPMX20_00805 0.79 -1.1 842,673 - MPMX20_00805 0.82 -0.2 842,697 + MPMX20_00805 0.83 -1.2 842,729 - MPMX20_00805 0.86 -0.8 842,818 - -0.8 842,845 + -0.4 842,848 - -1.0 842,867 + -0.5 842,872 - -1.1 843,143 + -1.7 843,326 + +0.2 843,342 - -0.3 843,359 + -0.1 843,385 - -1.2 843,761 + MPMX20_00806 0.39 -2.0 843,805 - MPMX20_00806 0.45 -0.8 843,812 + MPMX20_00806 0.46 -2.0 843,812 + MPMX20_00806 0.46 -0.8 843,820 - MPMX20_00806 0.47 +0.6 843,822 + MPMX20_00806 0.47 -1.0 843,822 + MPMX20_00806 0.47 +0.0 843,822 + MPMX20_00806 0.47 -1.6 843,859 + MPMX20_00806 0.52 +0.8 843,966 + MPMX20_00806 0.66 -2.0 843,976 + MPMX20_00806 0.67 -0.8 844,022 + MPMX20_00806 0.73 -1.6 844,112 - MPMX20_00806 0.85 -0.6 844,269 + +0.6 844,407 - +2.2 844,407 - +0.2 844,407 - -0.1 844,443 - -0.4 844,773 + MPMX20_00807 0.16 -0.8 844,816 - MPMX20_00807 0.17 -1.8 845,008 + MPMX20_00807 0.25 -0.8 845,008 + MPMX20_00807 0.25 +1.2 845,016 - MPMX20_00807 0.25 -1.2 845,016 - MPMX20_00807 0.25 -0.1 845,208 + MPMX20_00807 0.32 +1.2
Or see this region's nucleotide sequence