Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00456

Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00455 and MPMX20_00456 are separated by 2 nucleotidesMPMX20_00456 and MPMX20_00457 are separated by 71 nucleotidesMPMX20_00457 and MPMX20_00458 are separated by 62 nucleotides MPMX20_00455: MPMX20_00455 - Modulator of FtsH protease HflK, at 469,853 to 471,115 _00455 MPMX20_00456: MPMX20_00456 - Modulator of FtsH protease HflC, at 471,118 to 472,122 _00456 MPMX20_00457: MPMX20_00457 - hypothetical protein, at 472,194 to 472,391 _00457 MPMX20_00458: MPMX20_00458 - Adenylosuccinate synthetase, at 472,454 to 473,794 _00458 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 470.130 kb on - strand, within MPMX20_00455at 470.140 kb on + strand, within MPMX20_00455at 470.203 kb on + strand, within MPMX20_00455at 470.312 kb on - strand, within MPMX20_00455at 470.312 kb on - strand, within MPMX20_00455at 470.388 kb on + strand, within MPMX20_00455at 470.428 kb on + strand, within MPMX20_00455at 470.501 kb on - strand, within MPMX20_00455at 470.563 kb on + strand, within MPMX20_00455at 470.571 kb on - strand, within MPMX20_00455at 470.571 kb on - strand, within MPMX20_00455at 470.590 kb on + strand, within MPMX20_00455at 470.665 kb on + strand, within MPMX20_00455at 470.668 kb on - strand, within MPMX20_00455at 470.675 kb on + strand, within MPMX20_00455at 470.694 kb on + strand, within MPMX20_00455at 470.702 kb on - strand, within MPMX20_00455at 470.735 kb on + strand, within MPMX20_00455at 470.753 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.758 kb on + strand, within MPMX20_00455at 470.812 kb on - strand, within MPMX20_00455at 470.871 kb on + strand, within MPMX20_00455at 470.879 kb on - strand, within MPMX20_00455at 470.910 kb on - strand, within MPMX20_00455at 471.085 kb on + strandat 471.093 kb on - strandat 471.093 kb on - strandat 471.128 kb on + strandat 471.276 kb on - strand, within MPMX20_00456at 471.291 kb on + strand, within MPMX20_00456at 471.325 kb on - strand, within MPMX20_00456at 471.410 kb on - strand, within MPMX20_00456at 471.428 kb on + strand, within MPMX20_00456at 471.428 kb on + strand, within MPMX20_00456at 471.590 kb on - strand, within MPMX20_00456at 471.663 kb on - strand, within MPMX20_00456at 471.705 kb on + strand, within MPMX20_00456at 471.705 kb on + strand, within MPMX20_00456at 471.713 kb on - strand, within MPMX20_00456at 471.715 kb on + strand, within MPMX20_00456at 471.715 kb on - strand, within MPMX20_00456at 471.723 kb on - strand, within MPMX20_00456at 471.743 kb on + strand, within MPMX20_00456at 471.774 kb on + strand, within MPMX20_00456at 471.784 kb on + strand, within MPMX20_00456at 471.842 kb on + strand, within MPMX20_00456at 471.898 kb on - strand, within MPMX20_00456at 471.928 kb on - strand, within MPMX20_00456at 471.928 kb on - strand, within MPMX20_00456at 471.935 kb on + strand, within MPMX20_00456at 471.993 kb on - strand, within MPMX20_00456at 472.104 kb on + strandat 472.104 kb on + strandat 472.104 kb on + strandat 472.141 kb on + strandat 472.210 kb on + strandat 472.220 kb on + strand, within MPMX20_00457at 472.243 kb on + strand, within MPMX20_00457at 472.243 kb on + strand, within MPMX20_00457at 472.243 kb on + strand, within MPMX20_00457at 472.280 kb on + strand, within MPMX20_00457at 472.288 kb on - strand, within MPMX20_00457at 472.291 kb on + strand, within MPMX20_00457at 472.336 kb on + strand, within MPMX20_00457at 472.336 kb on + strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457at 472.344 kb on - strand, within MPMX20_00457

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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470,130 - MPMX20_00455 0.22 -0.1
470,140 + MPMX20_00455 0.23 -1.1
470,203 + MPMX20_00455 0.28 +0.6
470,312 - MPMX20_00455 0.36 -0.4
470,312 - MPMX20_00455 0.36 +0.6
470,388 + MPMX20_00455 0.42 -1.6
470,428 + MPMX20_00455 0.46 -0.7
470,501 - MPMX20_00455 0.51 -2.0
470,563 + MPMX20_00455 0.56 -1.4
470,571 - MPMX20_00455 0.57 -0.4
470,571 - MPMX20_00455 0.57 -0.7
470,590 + MPMX20_00455 0.58 -1.5
470,665 + MPMX20_00455 0.64 -1.4
470,668 - MPMX20_00455 0.65 -0.8
470,675 + MPMX20_00455 0.65 -3.2
470,694 + MPMX20_00455 0.67 -0.5
470,702 - MPMX20_00455 0.67 -1.0
470,735 + MPMX20_00455 0.70 -0.8
470,753 + MPMX20_00455 0.71 -1.6
470,758 + MPMX20_00455 0.72 -1.9
470,758 + MPMX20_00455 0.72 +0.9
470,758 + MPMX20_00455 0.72 -1.5
470,758 + MPMX20_00455 0.72 -0.7
470,812 - MPMX20_00455 0.76 +0.7
470,871 + MPMX20_00455 0.81 -1.4
470,879 - MPMX20_00455 0.81 -0.1
470,910 - MPMX20_00455 0.84 -1.6
471,085 + +0.0
471,093 - +1.2
471,093 - -1.7
471,128 + -2.0
471,276 - MPMX20_00456 0.16 -0.1
471,291 + MPMX20_00456 0.17 -0.8
471,325 - MPMX20_00456 0.21 -1.0
471,410 - MPMX20_00456 0.29 +0.4
471,428 + MPMX20_00456 0.31 -1.9
471,428 + MPMX20_00456 0.31 -1.3
471,590 - MPMX20_00456 0.47 +2.2
471,663 - MPMX20_00456 0.54 -1.1
471,705 + MPMX20_00456 0.58 -0.6
471,705 + MPMX20_00456 0.58 +1.6
471,713 - MPMX20_00456 0.59 -2.2
471,715 + MPMX20_00456 0.59 -1.0
471,715 - MPMX20_00456 0.59 -1.6
471,723 - MPMX20_00456 0.60 +1.2
471,743 + MPMX20_00456 0.62 -2.0
471,774 + MPMX20_00456 0.65 -1.9
471,784 + MPMX20_00456 0.66 -2.9
471,842 + MPMX20_00456 0.72 +0.1
471,898 - MPMX20_00456 0.78 -2.2
471,928 - MPMX20_00456 0.81 -1.6
471,928 - MPMX20_00456 0.81 -1.4
471,935 + MPMX20_00456 0.81 -1.0
471,993 - MPMX20_00456 0.87 +0.6
472,104 + +3.2
472,104 + +0.6
472,104 + +0.1
472,141 + -0.4
472,210 + -0.7
472,220 + MPMX20_00457 0.13 +1.2
472,243 + MPMX20_00457 0.25 -0.8
472,243 + MPMX20_00457 0.25 -0.8
472,243 + MPMX20_00457 0.25 -0.6
472,280 + MPMX20_00457 0.43 -0.8
472,288 - MPMX20_00457 0.47 +0.1
472,291 + MPMX20_00457 0.49 -1.5
472,336 + MPMX20_00457 0.72 +1.0
472,336 + MPMX20_00457 0.72 +0.2
472,344 - MPMX20_00457 0.76 -0.2
472,344 - MPMX20_00457 0.76 -1.3
472,344 - MPMX20_00457 0.76 -0.8
472,344 - MPMX20_00457 0.76 +0.8

Or see this region's nucleotide sequence