Experiment: TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00114 and MPMX20_00115 are separated by 215 nucleotides MPMX20_00115 and MPMX20_00116 are separated by 9 nucleotides
MPMX20_00114: MPMX20_00114 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 115,081 to 116,013
_00114
MPMX20_00115: MPMX20_00115 - 2-amino-3-ketobutyrate coenzyme A ligase, at 116,229 to 117,425
_00115
MPMX20_00116: MPMX20_00116 - L-threonine 3-dehydrogenase, at 117,435 to 118,460
_00116
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 116.098 kb on - strand at 116.113 kb on + strand at 116.113 kb on + strand at 116.113 kb on + strand at 116.113 kb on + strand at 116.113 kb on + strand at 116.119 kb on + strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.121 kb on - strand at 116.128 kb on - strand at 116.152 kb on + strand at 116.183 kb on + strand at 116.183 kb on + strand at 116.183 kb on + strand at 116.191 kb on - strand at 116.191 kb on - strand at 116.191 kb on - strand at 116.252 kb on + strand at 116.258 kb on - strand at 116.289 kb on - strand at 116.291 kb on + strand at 116.299 kb on - strand at 116.309 kb on + strand at 116.339 kb on - strand at 116.386 kb on - strand, within MPMX20_00115 at 116.401 kb on + strand, within MPMX20_00115 at 116.401 kb on + strand, within MPMX20_00115 at 116.406 kb on + strand, within MPMX20_00115 at 116.465 kb on - strand, within MPMX20_00115 at 116.481 kb on + strand, within MPMX20_00115 at 116.489 kb on - strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.491 kb on + strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.499 kb on - strand, within MPMX20_00115 at 116.524 kb on - strand, within MPMX20_00115 at 116.544 kb on + strand, within MPMX20_00115 at 116.546 kb on + strand, within MPMX20_00115 at 116.582 kb on + strand, within MPMX20_00115 at 116.590 kb on - strand, within MPMX20_00115 at 116.599 kb on + strand, within MPMX20_00115 at 116.607 kb on - strand, within MPMX20_00115 at 116.607 kb on - strand, within MPMX20_00115 at 116.607 kb on - strand, within MPMX20_00115 at 116.630 kb on + strand, within MPMX20_00115 at 116.633 kb on - strand, within MPMX20_00115 at 116.638 kb on - strand, within MPMX20_00115 at 116.653 kb on + strand, within MPMX20_00115 at 116.663 kb on + strand, within MPMX20_00115 at 116.663 kb on + strand, within MPMX20_00115 at 116.663 kb on + strand, within MPMX20_00115 at 116.671 kb on - strand, within MPMX20_00115 at 116.684 kb on - strand, within MPMX20_00115 at 116.804 kb on + strand, within MPMX20_00115 at 116.804 kb on + strand, within MPMX20_00115 at 116.804 kb on + strand, within MPMX20_00115 at 116.804 kb on + strand, within MPMX20_00115 at 116.804 kb on + strand, within MPMX20_00115 at 116.812 kb on - strand, within MPMX20_00115 at 116.812 kb on - strand, within MPMX20_00115 at 116.812 kb on - strand, within MPMX20_00115 at 116.831 kb on + strand, within MPMX20_00115 at 116.846 kb on + strand, within MPMX20_00115 at 116.854 kb on - strand, within MPMX20_00115 at 116.912 kb on - strand, within MPMX20_00115 at 116.944 kb on - strand, within MPMX20_00115 at 116.954 kb on + strand, within MPMX20_00115 at 116.969 kb on - strand, within MPMX20_00115 at 116.974 kb on - strand, within MPMX20_00115 at 116.989 kb on - strand, within MPMX20_00115 at 117.049 kb on - strand, within MPMX20_00115 at 117.107 kb on + strand, within MPMX20_00115 at 117.107 kb on + strand, within MPMX20_00115 at 117.120 kb on - strand, within MPMX20_00115 at 117.188 kb on + strand, within MPMX20_00115 at 117.314 kb on - strand at 117.315 kb on + strand at 117.358 kb on - strand at 117.378 kb on + strand at 117.378 kb on - strand at 117.386 kb on - strand at 117.386 kb on - strand at 117.386 kb on - strand at 117.392 kb on - strand at 117.393 kb on - strand at 117.407 kb on + strand at 117.418 kb on - strand at 117.432 kb on - strand at 117.572 kb on - strand, within MPMX20_00116 at 117.641 kb on + strand, within MPMX20_00116 at 117.674 kb on - strand, within MPMX20_00116 at 117.694 kb on - strand, within MPMX20_00116 at 117.701 kb on - strand, within MPMX20_00116 at 117.755 kb on - strand, within MPMX20_00116 at 117.755 kb on - strand, within MPMX20_00116 at 117.774 kb on + strand, within MPMX20_00116 at 117.774 kb on + strand, within MPMX20_00116 at 117.774 kb on + strand, within MPMX20_00116 at 117.782 kb on - strand, within MPMX20_00116 at 117.911 kb on - strand, within MPMX20_00116 at 117.918 kb on - strand, within MPMX20_00116 at 117.980 kb on + strand, within MPMX20_00116 at 118.064 kb on - strand, within MPMX20_00116 at 118.140 kb on + strand, within MPMX20_00116 at 118.141 kb on + strand, within MPMX20_00116 at 118.141 kb on + strand, within MPMX20_00116 at 118.179 kb on + strand, within MPMX20_00116 at 118.187 kb on - strand, within MPMX20_00116 at 118.260 kb on - strand, within MPMX20_00116 at 118.265 kb on + strand, within MPMX20_00116 at 118.280 kb on + strand, within MPMX20_00116 at 118.305 kb on - strand, within MPMX20_00116 at 118.325 kb on - strand, within MPMX20_00116 at 118.347 kb on + strand, within MPMX20_00116 at 118.347 kb on + strand, within MPMX20_00116 at 118.348 kb on + strand, within MPMX20_00116 at 118.355 kb on - strand, within MPMX20_00116 at 118.355 kb on - strand, within MPMX20_00116 at 118.356 kb on - strand, within MPMX20_00116 at 118.402 kb on - strand at 118.405 kb on + strand at 118.405 kb on + strand at 118.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 116,098 - -0.7 116,113 + +1.3 116,113 + +2.1 116,113 + +1.0 116,113 + +0.3 116,113 + -0.5 116,119 + +0.2 116,121 - -1.6 116,121 - +1.3 116,121 - +1.4 116,121 - +0.3 116,121 - -0.4 116,121 - -1.1 116,121 - -0.1 116,121 - +2.3 116,121 - -0.1 116,128 - +0.3 116,152 + -0.9 116,183 + +0.5 116,183 + +0.9 116,183 + +1.0 116,191 - +0.7 116,191 - +0.3 116,191 - -0.9 116,252 + -0.6 116,258 - -2.5 116,289 - -1.2 116,291 + -0.1 116,299 - -2.4 116,309 + +0.5 116,339 - -1.3 116,386 - MPMX20_00115 0.13 -0.3 116,401 + MPMX20_00115 0.14 +0.5 116,401 + MPMX20_00115 0.14 -0.3 116,406 + MPMX20_00115 0.15 -1.1 116,465 - MPMX20_00115 0.20 +2.3 116,481 + MPMX20_00115 0.21 -0.6 116,489 - MPMX20_00115 0.22 -0.6 116,491 + MPMX20_00115 0.22 -1.4 116,491 + MPMX20_00115 0.22 -0.8 116,491 + MPMX20_00115 0.22 -1.3 116,491 + MPMX20_00115 0.22 +0.4 116,491 + MPMX20_00115 0.22 -0.4 116,491 + MPMX20_00115 0.22 +0.9 116,491 + MPMX20_00115 0.22 -1.2 116,491 + MPMX20_00115 0.22 +0.0 116,499 - MPMX20_00115 0.23 -0.1 116,499 - MPMX20_00115 0.23 -0.5 116,499 - MPMX20_00115 0.23 -0.8 116,499 - MPMX20_00115 0.23 -0.9 116,499 - MPMX20_00115 0.23 +0.7 116,499 - MPMX20_00115 0.23 -1.5 116,499 - MPMX20_00115 0.23 +2.3 116,499 - MPMX20_00115 0.23 +0.9 116,524 - MPMX20_00115 0.25 +0.1 116,544 + MPMX20_00115 0.26 -1.5 116,546 + MPMX20_00115 0.26 -2.6 116,582 + MPMX20_00115 0.29 -2.7 116,590 - MPMX20_00115 0.30 +0.7 116,599 + MPMX20_00115 0.31 -2.2 116,607 - MPMX20_00115 0.32 -2.0 116,607 - MPMX20_00115 0.32 -2.8 116,607 - MPMX20_00115 0.32 -0.9 116,630 + MPMX20_00115 0.34 -1.3 116,633 - MPMX20_00115 0.34 -2.9 116,638 - MPMX20_00115 0.34 -0.1 116,653 + MPMX20_00115 0.35 +0.3 116,663 + MPMX20_00115 0.36 -1.5 116,663 + MPMX20_00115 0.36 -2.4 116,663 + MPMX20_00115 0.36 -1.8 116,671 - MPMX20_00115 0.37 -0.9 116,684 - MPMX20_00115 0.38 +0.9 116,804 + MPMX20_00115 0.48 -2.1 116,804 + MPMX20_00115 0.48 -0.2 116,804 + MPMX20_00115 0.48 -0.9 116,804 + MPMX20_00115 0.48 +1.3 116,804 + MPMX20_00115 0.48 -1.7 116,812 - MPMX20_00115 0.49 -1.2 116,812 - MPMX20_00115 0.49 +1.3 116,812 - MPMX20_00115 0.49 -1.0 116,831 + MPMX20_00115 0.50 -1.8 116,846 + MPMX20_00115 0.52 -1.5 116,854 - MPMX20_00115 0.52 -0.5 116,912 - MPMX20_00115 0.57 -0.1 116,944 - MPMX20_00115 0.60 -1.7 116,954 + MPMX20_00115 0.61 +1.3 116,969 - MPMX20_00115 0.62 -1.2 116,974 - MPMX20_00115 0.62 -1.8 116,989 - MPMX20_00115 0.63 -1.3 117,049 - MPMX20_00115 0.69 +1.6 117,107 + MPMX20_00115 0.73 -0.5 117,107 + MPMX20_00115 0.73 -2.7 117,120 - MPMX20_00115 0.74 +0.7 117,188 + MPMX20_00115 0.80 +2.3 117,314 - -1.8 117,315 + -2.1 117,358 - -0.7 117,378 + -0.0 117,378 - -0.9 117,386 - +0.9 117,386 - -1.1 117,386 - -2.8 117,392 - -1.9 117,393 - -2.2 117,407 + -0.4 117,418 - -0.1 117,432 - -0.5 117,572 - MPMX20_00116 0.13 -2.7 117,641 + MPMX20_00116 0.20 +0.7 117,674 - MPMX20_00116 0.23 -0.3 117,694 - MPMX20_00116 0.25 -0.1 117,701 - MPMX20_00116 0.26 -0.1 117,755 - MPMX20_00116 0.31 -0.8 117,755 - MPMX20_00116 0.31 -0.1 117,774 + MPMX20_00116 0.33 -0.7 117,774 + MPMX20_00116 0.33 -0.7 117,774 + MPMX20_00116 0.33 -1.5 117,782 - MPMX20_00116 0.34 -1.1 117,911 - MPMX20_00116 0.46 -1.1 117,918 - MPMX20_00116 0.47 -1.4 117,980 + MPMX20_00116 0.53 -1.6 118,064 - MPMX20_00116 0.61 -1.4 118,140 + MPMX20_00116 0.69 -2.4 118,141 + MPMX20_00116 0.69 -0.6 118,141 + MPMX20_00116 0.69 -0.4 118,179 + MPMX20_00116 0.73 -1.0 118,187 - MPMX20_00116 0.73 -2.2 118,260 - MPMX20_00116 0.80 +0.4 118,265 + MPMX20_00116 0.81 +0.3 118,280 + MPMX20_00116 0.82 -0.1 118,305 - MPMX20_00116 0.85 -1.5 118,325 - MPMX20_00116 0.87 -1.7 118,347 + MPMX20_00116 0.89 -0.9 118,347 + MPMX20_00116 0.89 -1.2 118,348 + MPMX20_00116 0.89 -0.7 118,355 - MPMX20_00116 0.90 -1.4 118,355 - MPMX20_00116 0.90 -0.4 118,356 - MPMX20_00116 0.90 -2.3 118,402 - -0.1 118,405 + +2.3 118,405 + +0.3 118,425 + +0.2
Or see this region's nucleotide sequence