Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04740 and MPMX20_04741 are separated by 179 nucleotides MPMX20_04741 and MPMX20_04742 overlap by 1 nucleotides MPMX20_04742 and MPMX20_04743 are separated by 111 nucleotides
MPMX20_04740: MPMX20_04740 - SOS response-associated protein YedK, at 84,863 to 85,534
_04740
MPMX20_04741: MPMX20_04741 - Protein UmuD, at 85,714 to 86,136
_04741
MPMX20_04742: MPMX20_04742 - Protein UmuC, at 86,136 to 86,807
_04742
MPMX20_04743: MPMX20_04743 - IS481 family transposase ISAzs36, at 86,919 to 87,887
_04743
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 84.714 kb on + strand at 84.714 kb on - strand at 84.714 kb on - strand at 84.714 kb on - strand at 84.722 kb on + strand at 84.722 kb on - strand at 84.723 kb on + strand at 84.732 kb on - strand at 84.750 kb on + strand at 84.758 kb on - strand at 84.798 kb on - strand at 84.798 kb on - strand at 84.806 kb on + strand at 84.814 kb on - strand at 84.814 kb on - strand at 84.816 kb on + strand at 84.836 kb on - strand at 84.873 kb on + strand at 84.883 kb on + strand at 84.904 kb on - strand at 84.956 kb on - strand, within MPMX20_04740 at 84.964 kb on - strand, within MPMX20_04740 at 84.992 kb on - strand, within MPMX20_04740 at 85.014 kb on + strand, within MPMX20_04740 at 85.014 kb on + strand, within MPMX20_04740 at 85.040 kb on + strand, within MPMX20_04740 at 85.053 kb on - strand, within MPMX20_04740 at 85.071 kb on + strand, within MPMX20_04740 at 85.071 kb on + strand, within MPMX20_04740 at 85.081 kb on + strand, within MPMX20_04740 at 85.095 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.138 kb on - strand, within MPMX20_04740 at 85.156 kb on - strand, within MPMX20_04740 at 85.160 kb on + strand, within MPMX20_04740 at 85.165 kb on + strand, within MPMX20_04740 at 85.173 kb on - strand, within MPMX20_04740 at 85.184 kb on + strand, within MPMX20_04740 at 85.192 kb on - strand, within MPMX20_04740 at 85.251 kb on - strand, within MPMX20_04740 at 85.259 kb on + strand, within MPMX20_04740 at 85.265 kb on + strand, within MPMX20_04740 at 85.291 kb on - strand, within MPMX20_04740 at 85.311 kb on - strand, within MPMX20_04740 at 85.348 kb on + strand, within MPMX20_04740 at 85.355 kb on + strand, within MPMX20_04740 at 85.360 kb on + strand, within MPMX20_04740 at 85.360 kb on + strand, within MPMX20_04740 at 85.363 kb on - strand, within MPMX20_04740 at 85.404 kb on + strand, within MPMX20_04740 at 85.422 kb on + strand, within MPMX20_04740 at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.586 kb on + strand at 85.591 kb on + strand at 85.592 kb on + strand at 85.592 kb on + strand at 85.592 kb on - strand at 85.594 kb on - strand at 85.602 kb on + strand at 85.625 kb on - strand at 85.706 kb on + strand at 85.730 kb on + strand at 85.741 kb on + strand at 85.741 kb on + strand at 85.747 kb on + strand at 85.752 kb on + strand at 85.764 kb on + strand, within MPMX20_04741 at 85.772 kb on - strand, within MPMX20_04741 at 85.772 kb on - strand, within MPMX20_04741 at 85.784 kb on - strand, within MPMX20_04741 at 85.822 kb on + strand, within MPMX20_04741 at 85.871 kb on + strand, within MPMX20_04741 at 85.903 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.912 kb on - strand, within MPMX20_04741 at 85.917 kb on - strand, within MPMX20_04741 at 85.917 kb on - strand, within MPMX20_04741 at 85.933 kb on - strand, within MPMX20_04741 at 85.964 kb on + strand, within MPMX20_04741 at 86.008 kb on + strand, within MPMX20_04741 at 86.016 kb on + strand, within MPMX20_04741 at 86.016 kb on + strand, within MPMX20_04741 at 86.024 kb on - strand, within MPMX20_04741 at 86.024 kb on - strand, within MPMX20_04741 at 86.027 kb on + strand, within MPMX20_04741 at 86.027 kb on + strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.057 kb on + strand, within MPMX20_04741 at 86.057 kb on + strand, within MPMX20_04741 at 86.065 kb on - strand, within MPMX20_04741 at 86.072 kb on - strand, within MPMX20_04741 at 86.097 kb on + strand at 86.130 kb on + strand at 86.138 kb on - strand at 86.159 kb on - strand at 86.176 kb on + strand at 86.184 kb on - strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.212 kb on + strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.220 kb on - strand, within MPMX20_04742 at 86.227 kb on + strand, within MPMX20_04742 at 86.257 kb on + strand, within MPMX20_04742 at 86.257 kb on + strand, within MPMX20_04742 at 86.265 kb on - strand, within MPMX20_04742 at 86.265 kb on - strand, within MPMX20_04742 at 86.302 kb on - strand, within MPMX20_04742 at 86.306 kb on + strand, within MPMX20_04742 at 86.314 kb on - strand, within MPMX20_04742 at 86.361 kb on - strand, within MPMX20_04742 at 86.368 kb on + strand, within MPMX20_04742 at 86.371 kb on - strand, within MPMX20_04742 at 86.381 kb on - strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.400 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.424 kb on - strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.489 kb on + strand, within MPMX20_04742 at 86.502 kb on - strand, within MPMX20_04742 at 86.502 kb on - strand, within MPMX20_04742 at 86.519 kb on + strand, within MPMX20_04742 at 86.524 kb on + strand, within MPMX20_04742 at 86.548 kb on + strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.558 kb on + strand, within MPMX20_04742 at 86.570 kb on + strand, within MPMX20_04742 at 86.570 kb on + strand, within MPMX20_04742 at 86.570 kb on + strand, within MPMX20_04742 at 86.578 kb on - strand, within MPMX20_04742 at 86.578 kb on - strand, within MPMX20_04742 at 86.578 kb on - strand, within MPMX20_04742 at 86.602 kb on + strand, within MPMX20_04742 at 86.671 kb on - strand, within MPMX20_04742 at 86.732 kb on + strand, within MPMX20_04742 at 86.739 kb on + strand, within MPMX20_04742 at 86.783 kb on - strand at 86.802 kb on + strand at 86.835 kb on + strand at 86.835 kb on + strand at 86.843 kb on - strand at 86.843 kb on - strand at 86.843 kb on - strand at 86.900 kb on - strand at 86.955 kb on + strand at 86.963 kb on - strand at 86.963 kb on - strand at 86.963 kb on - strand at 86.965 kb on + strand at 86.965 kb on - strand at 86.970 kb on + strand at 86.973 kb on - strand at 86.974 kb on + strand at 86.978 kb on - strand at 86.978 kb on - strand at 87.011 kb on - strand at 87.034 kb on + strand, within MPMX20_04743 at 87.034 kb on + strand, within MPMX20_04743 at 87.047 kb on + strand, within MPMX20_04743 at 87.047 kb on + strand, within MPMX20_04743 at 87.047 kb on + strand, within MPMX20_04743 at 87.055 kb on - strand, within MPMX20_04743 at 87.068 kb on + strand, within MPMX20_04743 at 87.081 kb on - strand, within MPMX20_04743 at 87.106 kb on + strand, within MPMX20_04743 at 87.106 kb on + strand, within MPMX20_04743 at 87.106 kb on + strand, within MPMX20_04743 at 87.109 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.116 kb on + strand, within MPMX20_04743 at 87.116 kb on + strand, within MPMX20_04743
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 84,714 + -0.3 84,714 - -0.2 84,714 - -1.1 84,714 - +0.5 84,722 + +0.3 84,722 - -0.9 84,723 + -2.9 84,732 - -1.1 84,750 + -2.7 84,758 - +0.9 84,798 - -0.8 84,798 - -1.2 84,806 + -1.0 84,814 - -0.0 84,814 - -0.6 84,816 + -0.3 84,836 - -1.6 84,873 + -0.4 84,883 + -0.4 84,904 - -1.3 84,956 - MPMX20_04740 0.14 -0.9 84,964 - MPMX20_04740 0.15 -1.4 84,992 - MPMX20_04740 0.19 -0.5 85,014 + MPMX20_04740 0.22 -1.4 85,014 + MPMX20_04740 0.22 -1.4 85,040 + MPMX20_04740 0.26 +1.0 85,053 - MPMX20_04740 0.28 -0.6 85,071 + MPMX20_04740 0.31 +0.3 85,071 + MPMX20_04740 0.31 -1.3 85,081 + MPMX20_04740 0.32 -0.5 85,095 - MPMX20_04740 0.35 -1.4 85,128 - MPMX20_04740 0.39 -0.6 85,128 - MPMX20_04740 0.39 +0.5 85,128 - MPMX20_04740 0.39 -1.5 85,138 - MPMX20_04740 0.41 +1.0 85,156 - MPMX20_04740 0.44 -0.8 85,160 + MPMX20_04740 0.44 -1.6 85,165 + MPMX20_04740 0.45 -0.5 85,173 - MPMX20_04740 0.46 +0.9 85,184 + MPMX20_04740 0.48 -2.3 85,192 - MPMX20_04740 0.49 -0.2 85,251 - MPMX20_04740 0.58 -2.0 85,259 + MPMX20_04740 0.59 -0.8 85,265 + MPMX20_04740 0.60 +0.1 85,291 - MPMX20_04740 0.64 -1.3 85,311 - MPMX20_04740 0.67 -0.8 85,348 + MPMX20_04740 0.72 -0.5 85,355 + MPMX20_04740 0.73 +1.9 85,360 + MPMX20_04740 0.74 -0.1 85,360 + MPMX20_04740 0.74 +1.3 85,363 - MPMX20_04740 0.74 -1.8 85,404 + MPMX20_04740 0.81 -0.1 85,422 + MPMX20_04740 0.83 -1.5 85,566 + -0.6 85,566 + +0.3 85,566 + -0.6 85,566 + -0.3 85,566 + +0.7 85,566 + -1.2 85,568 + -0.8 85,568 + +2.1 85,568 + +0.2 85,568 + -1.2 85,568 + -1.4 85,574 - -2.8 85,574 - +3.0 85,574 - -1.0 85,574 - +2.2 85,574 - -1.7 85,574 - +0.2 85,574 - -1.6 85,574 - +0.1 85,574 - -0.6 85,576 - -0.3 85,576 - -0.4 85,576 - +1.5 85,576 - -0.2 85,586 + -1.2 85,591 + +0.8 85,592 + +0.5 85,592 + -0.5 85,592 - -0.1 85,594 - +0.5 85,602 + -1.0 85,625 - -1.2 85,706 + -0.1 85,730 + -0.3 85,741 + -0.9 85,741 + +0.4 85,747 + -0.7 85,752 + -0.6 85,764 + MPMX20_04741 0.12 +0.5 85,772 - MPMX20_04741 0.14 -0.8 85,772 - MPMX20_04741 0.14 +1.8 85,784 - MPMX20_04741 0.17 -1.9 85,822 + MPMX20_04741 0.26 -0.1 85,871 + MPMX20_04741 0.37 -1.2 85,903 + MPMX20_04741 0.45 -0.8 85,909 + MPMX20_04741 0.46 -0.5 85,909 + MPMX20_04741 0.46 -0.6 85,909 + MPMX20_04741 0.46 -0.4 85,912 - MPMX20_04741 0.47 +1.0 85,917 - MPMX20_04741 0.48 +0.0 85,917 - MPMX20_04741 0.48 -1.3 85,933 - MPMX20_04741 0.52 +0.1 85,964 + MPMX20_04741 0.59 -0.4 86,008 + MPMX20_04741 0.70 -0.9 86,016 + MPMX20_04741 0.71 +0.4 86,016 + MPMX20_04741 0.71 +0.5 86,024 - MPMX20_04741 0.73 -2.3 86,024 - MPMX20_04741 0.73 -0.6 86,027 + MPMX20_04741 0.74 +0.0 86,027 + MPMX20_04741 0.74 -0.8 86,035 - MPMX20_04741 0.76 +0.0 86,035 - MPMX20_04741 0.76 -0.3 86,035 - MPMX20_04741 0.76 -1.7 86,057 + MPMX20_04741 0.81 +0.2 86,057 + MPMX20_04741 0.81 -0.3 86,065 - MPMX20_04741 0.83 -0.1 86,072 - MPMX20_04741 0.85 -0.1 86,097 + -1.9 86,130 + +1.8 86,138 - -0.3 86,159 - +0.9 86,176 + -0.3 86,184 - +0.3 86,191 + -0.7 86,191 + -0.5 86,191 + +1.2 86,191 + +0.2 86,191 + -1.7 86,191 + -0.2 86,199 - -0.2 86,199 - -0.5 86,199 - -1.2 86,199 - -0.3 86,212 + MPMX20_04742 0.11 -0.3 86,217 - MPMX20_04742 0.12 -0.6 86,217 - MPMX20_04742 0.12 +0.6 86,217 - MPMX20_04742 0.12 -1.1 86,220 - MPMX20_04742 0.12 -0.9 86,227 + MPMX20_04742 0.14 -0.9 86,257 + MPMX20_04742 0.18 +2.8 86,257 + MPMX20_04742 0.18 +1.8 86,265 - MPMX20_04742 0.19 +0.6 86,265 - MPMX20_04742 0.19 -1.4 86,302 - MPMX20_04742 0.25 +0.7 86,306 + MPMX20_04742 0.25 +0.3 86,314 - MPMX20_04742 0.26 +0.0 86,361 - MPMX20_04742 0.33 -0.4 86,368 + MPMX20_04742 0.35 -1.4 86,371 - MPMX20_04742 0.35 -2.5 86,381 - MPMX20_04742 0.36 -0.5 86,383 + MPMX20_04742 0.37 -0.5 86,383 + MPMX20_04742 0.37 +2.2 86,383 + MPMX20_04742 0.37 +1.3 86,383 + MPMX20_04742 0.37 +0.3 86,391 - MPMX20_04742 0.38 -1.5 86,391 - MPMX20_04742 0.38 +3.8 86,391 - MPMX20_04742 0.38 +0.8 86,391 - MPMX20_04742 0.38 +0.2 86,391 - MPMX20_04742 0.38 -0.7 86,400 + MPMX20_04742 0.39 -1.8 86,416 + MPMX20_04742 0.42 -0.7 86,416 + MPMX20_04742 0.42 -1.0 86,416 + MPMX20_04742 0.42 +0.3 86,421 + MPMX20_04742 0.42 +0.5 86,421 + MPMX20_04742 0.42 -0.8 86,421 + MPMX20_04742 0.42 +0.4 86,421 + MPMX20_04742 0.42 -1.2 86,421 + MPMX20_04742 0.42 -0.8 86,424 - MPMX20_04742 0.43 -0.1 86,426 + MPMX20_04742 0.43 +2.5 86,426 + MPMX20_04742 0.43 -3.2 86,426 + MPMX20_04742 0.43 +0.1 86,426 + MPMX20_04742 0.43 -0.2 86,429 - MPMX20_04742 0.44 -0.5 86,429 - MPMX20_04742 0.44 -0.9 86,429 - MPMX20_04742 0.44 -0.2 86,489 + MPMX20_04742 0.53 -0.6 86,502 - MPMX20_04742 0.54 -1.0 86,502 - MPMX20_04742 0.54 +0.0 86,519 + MPMX20_04742 0.57 -0.3 86,524 + MPMX20_04742 0.58 +2.8 86,548 + MPMX20_04742 0.61 +0.6 86,556 - MPMX20_04742 0.62 +1.0 86,556 - MPMX20_04742 0.62 -1.5 86,556 - MPMX20_04742 0.62 -1.9 86,556 - MPMX20_04742 0.62 +0.3 86,558 + MPMX20_04742 0.63 -0.8 86,570 + MPMX20_04742 0.65 -0.4 86,570 + MPMX20_04742 0.65 -3.1 86,570 + MPMX20_04742 0.65 +0.6 86,578 - MPMX20_04742 0.66 -1.6 86,578 - MPMX20_04742 0.66 -0.5 86,578 - MPMX20_04742 0.66 +1.2 86,602 + MPMX20_04742 0.69 +1.9 86,671 - MPMX20_04742 0.80 +0.2 86,732 + MPMX20_04742 0.89 -2.1 86,739 + MPMX20_04742 0.90 -1.5 86,783 - +0.2 86,802 + -0.5 86,835 + -1.3 86,835 + +0.2 86,843 - -0.2 86,843 - -0.2 86,843 - -0.7 86,900 - +0.6 86,955 + +3.8 86,963 - -0.4 86,963 - -1.5 86,963 - +0.5 86,965 + +0.8 86,965 - -0.5 86,970 + +1.4 86,973 - -0.7 86,974 + +0.5 86,978 - -0.8 86,978 - +0.0 87,011 - -0.8 87,034 + MPMX20_04743 0.12 -1.6 87,034 + MPMX20_04743 0.12 -0.3 87,047 + MPMX20_04743 0.13 -2.5 87,047 + MPMX20_04743 0.13 -0.6 87,047 + MPMX20_04743 0.13 +0.2 87,055 - MPMX20_04743 0.14 +0.5 87,068 + MPMX20_04743 0.15 +1.6 87,081 - MPMX20_04743 0.17 -1.4 87,106 + MPMX20_04743 0.19 -0.3 87,106 + MPMX20_04743 0.19 -1.3 87,106 + MPMX20_04743 0.19 +0.0 87,109 - MPMX20_04743 0.20 -2.5 87,114 - MPMX20_04743 0.20 -0.6 87,114 - MPMX20_04743 0.20 +1.2 87,114 - MPMX20_04743 0.20 -1.1 87,114 - MPMX20_04743 0.20 -0.3 87,114 - MPMX20_04743 0.20 -1.0 87,114 - MPMX20_04743 0.20 -0.0 87,116 + MPMX20_04743 0.20 -1.2 87,116 + MPMX20_04743 0.20 -1.9
Or see this region's nucleotide sequence