Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04372

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04370 and MPMX20_04371 overlap by 4 nucleotidesMPMX20_04371 and MPMX20_04372 overlap by 4 nucleotidesMPMX20_04372 and MPMX20_04373 are separated by 2 nucleotidesMPMX20_04373 and MPMX20_04374 overlap by 44 nucleotidesMPMX20_04374 and MPMX20_04375 overlap by 4 nucleotides MPMX20_04370: MPMX20_04370 - hypothetical protein, at 4,561,964 to 4,562,437 _04370 MPMX20_04371: MPMX20_04371 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 4,562,434 to 4,563,165 _04371 MPMX20_04372: MPMX20_04372 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 4,563,162 to 4,564,391 _04372 MPMX20_04373: MPMX20_04373 - hypothetical protein, at 4,564,394 to 4,564,987 _04373 MPMX20_04374: MPMX20_04374 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 4,564,944 to 4,565,348 _04374 MPMX20_04375: MPMX20_04375 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 4,565,345 to 4,565,683 _04375 Position (kb) 4563 4564 4565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4562.164 kb on - strand, within MPMX20_04370at 4562.202 kb on + strand, within MPMX20_04370at 4562.207 kb on - strand, within MPMX20_04370at 4562.212 kb on + strand, within MPMX20_04370at 4562.212 kb on + strand, within MPMX20_04370at 4562.218 kb on + strand, within MPMX20_04370at 4562.294 kb on + strand, within MPMX20_04370at 4562.338 kb on + strand, within MPMX20_04370at 4562.340 kb on + strand, within MPMX20_04370at 4562.345 kb on + strand, within MPMX20_04370at 4562.345 kb on + strand, within MPMX20_04370at 4562.345 kb on + strand, within MPMX20_04370at 4562.353 kb on - strand, within MPMX20_04370at 4562.353 kb on - strand, within MPMX20_04370at 4562.353 kb on - strand, within MPMX20_04370at 4562.371 kb on + strand, within MPMX20_04370at 4562.371 kb on + strand, within MPMX20_04370at 4562.371 kb on + strand, within MPMX20_04370at 4562.371 kb on + strand, within MPMX20_04370at 4562.379 kb on + strand, within MPMX20_04370at 4562.379 kb on - strand, within MPMX20_04370at 4562.379 kb on - strand, within MPMX20_04370at 4562.379 kb on - strand, within MPMX20_04370at 4562.399 kb on - strandat 4562.441 kb on + strandat 4562.441 kb on + strandat 4562.449 kb on - strandat 4562.451 kb on + strandat 4562.478 kb on - strandat 4562.570 kb on + strand, within MPMX20_04371at 4562.578 kb on - strand, within MPMX20_04371at 4562.587 kb on + strand, within MPMX20_04371at 4562.604 kb on - strand, within MPMX20_04371at 4562.629 kb on - strand, within MPMX20_04371at 4562.675 kb on + strand, within MPMX20_04371at 4562.750 kb on + strand, within MPMX20_04371at 4562.750 kb on + strand, within MPMX20_04371at 4562.750 kb on + strand, within MPMX20_04371at 4562.758 kb on - strand, within MPMX20_04371at 4562.793 kb on + strand, within MPMX20_04371at 4562.798 kb on + strand, within MPMX20_04371at 4562.937 kb on - strand, within MPMX20_04371at 4562.960 kb on - strand, within MPMX20_04371at 4563.020 kb on - strand, within MPMX20_04371at 4563.067 kb on - strand, within MPMX20_04371at 4563.088 kb on + strand, within MPMX20_04371at 4563.105 kb on + strandat 4563.122 kb on + strandat 4563.160 kb on - strandat 4563.196 kb on + strandat 4563.210 kb on + strandat 4563.293 kb on - strand, within MPMX20_04372at 4563.302 kb on - strand, within MPMX20_04372at 4563.302 kb on - strand, within MPMX20_04372at 4563.306 kb on + strand, within MPMX20_04372at 4563.400 kb on + strand, within MPMX20_04372at 4563.439 kb on + strand, within MPMX20_04372at 4563.496 kb on + strand, within MPMX20_04372at 4563.496 kb on + strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.504 kb on - strand, within MPMX20_04372at 4563.556 kb on - strand, within MPMX20_04372at 4563.558 kb on + strand, within MPMX20_04372at 4563.566 kb on - strand, within MPMX20_04372at 4563.639 kb on - strand, within MPMX20_04372at 4563.652 kb on + strand, within MPMX20_04372at 4563.652 kb on + strand, within MPMX20_04372at 4563.733 kb on + strand, within MPMX20_04372at 4563.741 kb on - strand, within MPMX20_04372at 4563.784 kb on + strand, within MPMX20_04372at 4563.888 kb on + strand, within MPMX20_04372at 4563.889 kb on + strand, within MPMX20_04372at 4563.889 kb on + strand, within MPMX20_04372at 4563.907 kb on - strand, within MPMX20_04372at 4563.921 kb on - strand, within MPMX20_04372at 4563.963 kb on + strand, within MPMX20_04372at 4563.963 kb on + strand, within MPMX20_04372at 4563.981 kb on - strand, within MPMX20_04372at 4563.998 kb on + strand, within MPMX20_04372at 4564.050 kb on + strand, within MPMX20_04372at 4564.051 kb on - strand, within MPMX20_04372at 4564.179 kb on - strand, within MPMX20_04372at 4564.205 kb on - strand, within MPMX20_04372at 4564.268 kb on + strand, within MPMX20_04372at 4564.296 kb on + strandat 4564.401 kb on + strandat 4564.409 kb on - strandat 4564.431 kb on + strandat 4564.462 kb on + strand, within MPMX20_04373at 4564.469 kb on + strand, within MPMX20_04373at 4564.506 kb on - strand, within MPMX20_04373at 4564.552 kb on + strand, within MPMX20_04373at 4564.552 kb on + strand, within MPMX20_04373at 4564.552 kb on + strand, within MPMX20_04373at 4564.602 kb on + strand, within MPMX20_04373at 4564.610 kb on - strand, within MPMX20_04373at 4564.699 kb on - strand, within MPMX20_04373at 4564.711 kb on + strand, within MPMX20_04373at 4564.753 kb on - strand, within MPMX20_04373at 4564.815 kb on + strand, within MPMX20_04373at 4564.911 kb on + strand, within MPMX20_04373at 4564.911 kb on + strand, within MPMX20_04373at 4564.926 kb on + strand, within MPMX20_04373at 4564.934 kb on + strandat 4564.934 kb on - strandat 4564.935 kb on + strandat 4564.942 kb on - strandat 4565.080 kb on + strand, within MPMX20_04374at 4565.112 kb on + strand, within MPMX20_04374at 4565.112 kb on + strand, within MPMX20_04374at 4565.120 kb on - strand, within MPMX20_04374at 4565.127 kb on - strand, within MPMX20_04374at 4565.139 kb on + strand, within MPMX20_04374at 4565.278 kb on + strand, within MPMX20_04374at 4565.312 kb on + strandat 4565.312 kb on + strandat 4565.315 kb on - strandat 4565.320 kb on - strandat 4565.320 kb on - strandat 4565.322 kb on + strandat 4565.330 kb on - strandat 4565.350 kb on + strandat 4565.357 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
remove
4,562,164 - MPMX20_04370 0.42 -0.1
4,562,202 + MPMX20_04370 0.50 +1.2
4,562,207 - MPMX20_04370 0.51 -2.0
4,562,212 + MPMX20_04370 0.52 +1.6
4,562,212 + MPMX20_04370 0.52 -1.0
4,562,218 + MPMX20_04370 0.54 -1.8
4,562,294 + MPMX20_04370 0.70 +0.1
4,562,338 + MPMX20_04370 0.79 -2.0
4,562,340 + MPMX20_04370 0.79 -0.4
4,562,345 + MPMX20_04370 0.80 -1.1
4,562,345 + MPMX20_04370 0.80 -2.3
4,562,345 + MPMX20_04370 0.80 -0.3
4,562,353 - MPMX20_04370 0.82 -2.3
4,562,353 - MPMX20_04370 0.82 -1.4
4,562,353 - MPMX20_04370 0.82 -2.1
4,562,371 + MPMX20_04370 0.86 -1.3
4,562,371 + MPMX20_04370 0.86 -1.1
4,562,371 + MPMX20_04370 0.86 +0.6
4,562,371 + MPMX20_04370 0.86 -1.2
4,562,379 + MPMX20_04370 0.88 -1.0
4,562,379 - MPMX20_04370 0.88 -0.7
4,562,379 - MPMX20_04370 0.88 +0.0
4,562,379 - MPMX20_04370 0.88 +0.5
4,562,399 - -1.8
4,562,441 + +0.0
4,562,441 + -1.0
4,562,449 - +0.0
4,562,451 + +0.4
4,562,478 - +0.0
4,562,570 + MPMX20_04371 0.19 +0.7
4,562,578 - MPMX20_04371 0.20 -0.5
4,562,587 + MPMX20_04371 0.21 +0.6
4,562,604 - MPMX20_04371 0.23 +0.4
4,562,629 - MPMX20_04371 0.27 +1.0
4,562,675 + MPMX20_04371 0.33 +1.6
4,562,750 + MPMX20_04371 0.43 -1.6
4,562,750 + MPMX20_04371 0.43 -1.9
4,562,750 + MPMX20_04371 0.43 +0.1
4,562,758 - MPMX20_04371 0.44 -0.1
4,562,793 + MPMX20_04371 0.49 -0.9
4,562,798 + MPMX20_04371 0.50 +0.6
4,562,937 - MPMX20_04371 0.69 +0.6
4,562,960 - MPMX20_04371 0.72 +1.1
4,563,020 - MPMX20_04371 0.80 -0.2
4,563,067 - MPMX20_04371 0.86 -0.5
4,563,088 + MPMX20_04371 0.89 +3.2
4,563,105 + +1.6
4,563,122 + -2.1
4,563,160 - -0.2
4,563,196 + -0.3
4,563,210 + +1.5
4,563,293 - MPMX20_04372 0.11 +4.4
4,563,302 - MPMX20_04372 0.11 +1.0
4,563,302 - MPMX20_04372 0.11 +0.3
4,563,306 + MPMX20_04372 0.12 +0.5
4,563,400 + MPMX20_04372 0.19 -2.4
4,563,439 + MPMX20_04372 0.23 -0.4
4,563,496 + MPMX20_04372 0.27 -1.1
4,563,496 + MPMX20_04372 0.27 +0.9
4,563,504 - MPMX20_04372 0.28 -0.6
4,563,504 - MPMX20_04372 0.28 +1.6
4,563,504 - MPMX20_04372 0.28 -0.2
4,563,504 - MPMX20_04372 0.28 -1.7
4,563,504 - MPMX20_04372 0.28 -1.0
4,563,556 - MPMX20_04372 0.32 -1.1
4,563,558 + MPMX20_04372 0.32 -2.0
4,563,566 - MPMX20_04372 0.33 -0.4
4,563,639 - MPMX20_04372 0.39 +0.2
4,563,652 + MPMX20_04372 0.40 -1.6
4,563,652 + MPMX20_04372 0.40 +1.0
4,563,733 + MPMX20_04372 0.46 +0.0
4,563,741 - MPMX20_04372 0.47 -0.3
4,563,784 + MPMX20_04372 0.51 -0.4
4,563,888 + MPMX20_04372 0.59 -0.6
4,563,889 + MPMX20_04372 0.59 +0.1
4,563,889 + MPMX20_04372 0.59 +1.6
4,563,907 - MPMX20_04372 0.61 +0.1
4,563,921 - MPMX20_04372 0.62 +5.6
4,563,963 + MPMX20_04372 0.65 +0.2
4,563,963 + MPMX20_04372 0.65 +0.0
4,563,981 - MPMX20_04372 0.67 -2.4
4,563,998 + MPMX20_04372 0.68 -0.5
4,564,050 + MPMX20_04372 0.72 -1.0
4,564,051 - MPMX20_04372 0.72 +0.3
4,564,179 - MPMX20_04372 0.83 -0.4
4,564,205 - MPMX20_04372 0.85 -1.1
4,564,268 + MPMX20_04372 0.90 -1.0
4,564,296 + +0.1
4,564,401 + +1.6
4,564,409 - +2.2
4,564,431 + -0.2
4,564,462 + MPMX20_04373 0.11 +0.4
4,564,469 + MPMX20_04373 0.13 -0.9
4,564,506 - MPMX20_04373 0.19 +1.0
4,564,552 + MPMX20_04373 0.27 +2.0
4,564,552 + MPMX20_04373 0.27 +0.1
4,564,552 + MPMX20_04373 0.27 -1.6
4,564,602 + MPMX20_04373 0.35 +0.6
4,564,610 - MPMX20_04373 0.36 -1.3
4,564,699 - MPMX20_04373 0.51 +0.3
4,564,711 + MPMX20_04373 0.53 -0.8
4,564,753 - MPMX20_04373 0.60 +0.3
4,564,815 + MPMX20_04373 0.71 -1.6
4,564,911 + MPMX20_04373 0.87 -1.3
4,564,911 + MPMX20_04373 0.87 -1.2
4,564,926 + MPMX20_04373 0.90 +0.3
4,564,934 + -0.6
4,564,934 - -0.5
4,564,935 + +1.3
4,564,942 - -1.2
4,565,080 + MPMX20_04374 0.34 -0.1
4,565,112 + MPMX20_04374 0.41 -3.0
4,565,112 + MPMX20_04374 0.41 -1.0
4,565,120 - MPMX20_04374 0.43 -1.4
4,565,127 - MPMX20_04374 0.45 -3.0
4,565,139 + MPMX20_04374 0.48 -2.8
4,565,278 + MPMX20_04374 0.82 -1.3
4,565,312 + -1.5
4,565,312 + -1.0
4,565,315 - -2.9
4,565,320 - -4.7
4,565,320 - -0.9
4,565,322 + -2.9
4,565,330 - -3.1
4,565,350 + -1.8
4,565,357 + +0.3

Or see this region's nucleotide sequence