Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04370 and MPMX20_04371 overlap by 4 nucleotides MPMX20_04371 and MPMX20_04372 overlap by 4 nucleotides MPMX20_04372 and MPMX20_04373 are separated by 2 nucleotides MPMX20_04373 and MPMX20_04374 overlap by 44 nucleotides MPMX20_04374 and MPMX20_04375 overlap by 4 nucleotides
MPMX20_04370: MPMX20_04370 - hypothetical protein, at 4,561,964 to 4,562,437
_04370
MPMX20_04371: MPMX20_04371 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 4,562,434 to 4,563,165
_04371
MPMX20_04372: MPMX20_04372 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 4,563,162 to 4,564,391
_04372
MPMX20_04373: MPMX20_04373 - hypothetical protein, at 4,564,394 to 4,564,987
_04373
MPMX20_04374: MPMX20_04374 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 4,564,944 to 4,565,348
_04374
MPMX20_04375: MPMX20_04375 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 4,565,345 to 4,565,683
_04375
Position (kb)
4563
4564
4565 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 4562.164 kb on - strand, within MPMX20_04370 at 4562.202 kb on + strand, within MPMX20_04370 at 4562.207 kb on - strand, within MPMX20_04370 at 4562.212 kb on + strand, within MPMX20_04370 at 4562.212 kb on + strand, within MPMX20_04370 at 4562.218 kb on + strand, within MPMX20_04370 at 4562.294 kb on + strand, within MPMX20_04370 at 4562.338 kb on + strand, within MPMX20_04370 at 4562.340 kb on + strand, within MPMX20_04370 at 4562.345 kb on + strand, within MPMX20_04370 at 4562.345 kb on + strand, within MPMX20_04370 at 4562.345 kb on + strand, within MPMX20_04370 at 4562.353 kb on - strand, within MPMX20_04370 at 4562.353 kb on - strand, within MPMX20_04370 at 4562.353 kb on - strand, within MPMX20_04370 at 4562.371 kb on + strand, within MPMX20_04370 at 4562.371 kb on + strand, within MPMX20_04370 at 4562.371 kb on + strand, within MPMX20_04370 at 4562.371 kb on + strand, within MPMX20_04370 at 4562.379 kb on + strand, within MPMX20_04370 at 4562.379 kb on - strand, within MPMX20_04370 at 4562.379 kb on - strand, within MPMX20_04370 at 4562.379 kb on - strand, within MPMX20_04370 at 4562.399 kb on - strand at 4562.441 kb on + strand at 4562.441 kb on + strand at 4562.449 kb on - strand at 4562.451 kb on + strand at 4562.478 kb on - strand at 4562.570 kb on + strand, within MPMX20_04371 at 4562.578 kb on - strand, within MPMX20_04371 at 4562.587 kb on + strand, within MPMX20_04371 at 4562.604 kb on - strand, within MPMX20_04371 at 4562.629 kb on - strand, within MPMX20_04371 at 4562.675 kb on + strand, within MPMX20_04371 at 4562.750 kb on + strand, within MPMX20_04371 at 4562.750 kb on + strand, within MPMX20_04371 at 4562.750 kb on + strand, within MPMX20_04371 at 4562.758 kb on - strand, within MPMX20_04371 at 4562.793 kb on + strand, within MPMX20_04371 at 4562.798 kb on + strand, within MPMX20_04371 at 4562.937 kb on - strand, within MPMX20_04371 at 4562.960 kb on - strand, within MPMX20_04371 at 4563.020 kb on - strand, within MPMX20_04371 at 4563.067 kb on - strand, within MPMX20_04371 at 4563.088 kb on + strand, within MPMX20_04371 at 4563.105 kb on + strand at 4563.122 kb on + strand at 4563.160 kb on - strand at 4563.196 kb on + strand at 4563.210 kb on + strand at 4563.293 kb on - strand, within MPMX20_04372 at 4563.302 kb on - strand, within MPMX20_04372 at 4563.302 kb on - strand, within MPMX20_04372 at 4563.306 kb on + strand, within MPMX20_04372 at 4563.400 kb on + strand, within MPMX20_04372 at 4563.439 kb on + strand, within MPMX20_04372 at 4563.496 kb on + strand, within MPMX20_04372 at 4563.496 kb on + strand, within MPMX20_04372 at 4563.504 kb on - strand, within MPMX20_04372 at 4563.504 kb on - strand, within MPMX20_04372 at 4563.504 kb on - strand, within MPMX20_04372 at 4563.504 kb on - strand, within MPMX20_04372 at 4563.504 kb on - strand, within MPMX20_04372 at 4563.556 kb on - strand, within MPMX20_04372 at 4563.558 kb on + strand, within MPMX20_04372 at 4563.566 kb on - strand, within MPMX20_04372 at 4563.639 kb on - strand, within MPMX20_04372 at 4563.652 kb on + strand, within MPMX20_04372 at 4563.652 kb on + strand, within MPMX20_04372 at 4563.733 kb on + strand, within MPMX20_04372 at 4563.741 kb on - strand, within MPMX20_04372 at 4563.784 kb on + strand, within MPMX20_04372 at 4563.888 kb on + strand, within MPMX20_04372 at 4563.889 kb on + strand, within MPMX20_04372 at 4563.889 kb on + strand, within MPMX20_04372 at 4563.907 kb on - strand, within MPMX20_04372 at 4563.921 kb on - strand, within MPMX20_04372 at 4563.963 kb on + strand, within MPMX20_04372 at 4563.963 kb on + strand, within MPMX20_04372 at 4563.981 kb on - strand, within MPMX20_04372 at 4563.998 kb on + strand, within MPMX20_04372 at 4564.050 kb on + strand, within MPMX20_04372 at 4564.051 kb on - strand, within MPMX20_04372 at 4564.179 kb on - strand, within MPMX20_04372 at 4564.205 kb on - strand, within MPMX20_04372 at 4564.268 kb on + strand, within MPMX20_04372 at 4564.296 kb on + strand at 4564.401 kb on + strand at 4564.409 kb on - strand at 4564.431 kb on + strand at 4564.462 kb on + strand, within MPMX20_04373 at 4564.469 kb on + strand, within MPMX20_04373 at 4564.506 kb on - strand, within MPMX20_04373 at 4564.552 kb on + strand, within MPMX20_04373 at 4564.552 kb on + strand, within MPMX20_04373 at 4564.552 kb on + strand, within MPMX20_04373 at 4564.602 kb on + strand, within MPMX20_04373 at 4564.610 kb on - strand, within MPMX20_04373 at 4564.699 kb on - strand, within MPMX20_04373 at 4564.711 kb on + strand, within MPMX20_04373 at 4564.753 kb on - strand, within MPMX20_04373 at 4564.815 kb on + strand, within MPMX20_04373 at 4564.911 kb on + strand, within MPMX20_04373 at 4564.911 kb on + strand, within MPMX20_04373 at 4564.926 kb on + strand, within MPMX20_04373 at 4564.934 kb on + strand at 4564.934 kb on - strand at 4564.935 kb on + strand at 4564.942 kb on - strand at 4565.080 kb on + strand, within MPMX20_04374 at 4565.112 kb on + strand, within MPMX20_04374 at 4565.112 kb on + strand, within MPMX20_04374 at 4565.120 kb on - strand, within MPMX20_04374 at 4565.127 kb on - strand, within MPMX20_04374 at 4565.139 kb on + strand, within MPMX20_04374 at 4565.278 kb on + strand, within MPMX20_04374 at 4565.312 kb on + strand at 4565.312 kb on + strand at 4565.315 kb on - strand at 4565.320 kb on - strand at 4565.320 kb on - strand at 4565.322 kb on + strand at 4565.330 kb on - strand at 4565.350 kb on + strand at 4565.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,562,164 - MPMX20_04370 0.42 -0.1 4,562,202 + MPMX20_04370 0.50 +1.2 4,562,207 - MPMX20_04370 0.51 -2.0 4,562,212 + MPMX20_04370 0.52 +1.6 4,562,212 + MPMX20_04370 0.52 -1.0 4,562,218 + MPMX20_04370 0.54 -1.8 4,562,294 + MPMX20_04370 0.70 +0.1 4,562,338 + MPMX20_04370 0.79 -2.0 4,562,340 + MPMX20_04370 0.79 -0.4 4,562,345 + MPMX20_04370 0.80 -1.1 4,562,345 + MPMX20_04370 0.80 -2.3 4,562,345 + MPMX20_04370 0.80 -0.3 4,562,353 - MPMX20_04370 0.82 -2.3 4,562,353 - MPMX20_04370 0.82 -1.4 4,562,353 - MPMX20_04370 0.82 -2.1 4,562,371 + MPMX20_04370 0.86 -1.3 4,562,371 + MPMX20_04370 0.86 -1.1 4,562,371 + MPMX20_04370 0.86 +0.6 4,562,371 + MPMX20_04370 0.86 -1.2 4,562,379 + MPMX20_04370 0.88 -1.0 4,562,379 - MPMX20_04370 0.88 -0.7 4,562,379 - MPMX20_04370 0.88 +0.0 4,562,379 - MPMX20_04370 0.88 +0.5 4,562,399 - -1.8 4,562,441 + +0.0 4,562,441 + -1.0 4,562,449 - +0.0 4,562,451 + +0.4 4,562,478 - +0.0 4,562,570 + MPMX20_04371 0.19 +0.7 4,562,578 - MPMX20_04371 0.20 -0.5 4,562,587 + MPMX20_04371 0.21 +0.6 4,562,604 - MPMX20_04371 0.23 +0.4 4,562,629 - MPMX20_04371 0.27 +1.0 4,562,675 + MPMX20_04371 0.33 +1.6 4,562,750 + MPMX20_04371 0.43 -1.6 4,562,750 + MPMX20_04371 0.43 -1.9 4,562,750 + MPMX20_04371 0.43 +0.1 4,562,758 - MPMX20_04371 0.44 -0.1 4,562,793 + MPMX20_04371 0.49 -0.9 4,562,798 + MPMX20_04371 0.50 +0.6 4,562,937 - MPMX20_04371 0.69 +0.6 4,562,960 - MPMX20_04371 0.72 +1.1 4,563,020 - MPMX20_04371 0.80 -0.2 4,563,067 - MPMX20_04371 0.86 -0.5 4,563,088 + MPMX20_04371 0.89 +3.2 4,563,105 + +1.6 4,563,122 + -2.1 4,563,160 - -0.2 4,563,196 + -0.3 4,563,210 + +1.5 4,563,293 - MPMX20_04372 0.11 +4.4 4,563,302 - MPMX20_04372 0.11 +1.0 4,563,302 - MPMX20_04372 0.11 +0.3 4,563,306 + MPMX20_04372 0.12 +0.5 4,563,400 + MPMX20_04372 0.19 -2.4 4,563,439 + MPMX20_04372 0.23 -0.4 4,563,496 + MPMX20_04372 0.27 -1.1 4,563,496 + MPMX20_04372 0.27 +0.9 4,563,504 - MPMX20_04372 0.28 -0.6 4,563,504 - MPMX20_04372 0.28 +1.6 4,563,504 - MPMX20_04372 0.28 -0.2 4,563,504 - MPMX20_04372 0.28 -1.7 4,563,504 - MPMX20_04372 0.28 -1.0 4,563,556 - MPMX20_04372 0.32 -1.1 4,563,558 + MPMX20_04372 0.32 -2.0 4,563,566 - MPMX20_04372 0.33 -0.4 4,563,639 - MPMX20_04372 0.39 +0.2 4,563,652 + MPMX20_04372 0.40 -1.6 4,563,652 + MPMX20_04372 0.40 +1.0 4,563,733 + MPMX20_04372 0.46 +0.0 4,563,741 - MPMX20_04372 0.47 -0.3 4,563,784 + MPMX20_04372 0.51 -0.4 4,563,888 + MPMX20_04372 0.59 -0.6 4,563,889 + MPMX20_04372 0.59 +0.1 4,563,889 + MPMX20_04372 0.59 +1.6 4,563,907 - MPMX20_04372 0.61 +0.1 4,563,921 - MPMX20_04372 0.62 +5.6 4,563,963 + MPMX20_04372 0.65 +0.2 4,563,963 + MPMX20_04372 0.65 +0.0 4,563,981 - MPMX20_04372 0.67 -2.4 4,563,998 + MPMX20_04372 0.68 -0.5 4,564,050 + MPMX20_04372 0.72 -1.0 4,564,051 - MPMX20_04372 0.72 +0.3 4,564,179 - MPMX20_04372 0.83 -0.4 4,564,205 - MPMX20_04372 0.85 -1.1 4,564,268 + MPMX20_04372 0.90 -1.0 4,564,296 + +0.1 4,564,401 + +1.6 4,564,409 - +2.2 4,564,431 + -0.2 4,564,462 + MPMX20_04373 0.11 +0.4 4,564,469 + MPMX20_04373 0.13 -0.9 4,564,506 - MPMX20_04373 0.19 +1.0 4,564,552 + MPMX20_04373 0.27 +2.0 4,564,552 + MPMX20_04373 0.27 +0.1 4,564,552 + MPMX20_04373 0.27 -1.6 4,564,602 + MPMX20_04373 0.35 +0.6 4,564,610 - MPMX20_04373 0.36 -1.3 4,564,699 - MPMX20_04373 0.51 +0.3 4,564,711 + MPMX20_04373 0.53 -0.8 4,564,753 - MPMX20_04373 0.60 +0.3 4,564,815 + MPMX20_04373 0.71 -1.6 4,564,911 + MPMX20_04373 0.87 -1.3 4,564,911 + MPMX20_04373 0.87 -1.2 4,564,926 + MPMX20_04373 0.90 +0.3 4,564,934 + -0.6 4,564,934 - -0.5 4,564,935 + +1.3 4,564,942 - -1.2 4,565,080 + MPMX20_04374 0.34 -0.1 4,565,112 + MPMX20_04374 0.41 -3.0 4,565,112 + MPMX20_04374 0.41 -1.0 4,565,120 - MPMX20_04374 0.43 -1.4 4,565,127 - MPMX20_04374 0.45 -3.0 4,565,139 + MPMX20_04374 0.48 -2.8 4,565,278 + MPMX20_04374 0.82 -1.3 4,565,312 + -1.5 4,565,312 + -1.0 4,565,315 - -2.9 4,565,320 - -4.7 4,565,320 - -0.9 4,565,322 + -2.9 4,565,330 - -3.1 4,565,350 + -1.8 4,565,357 + +0.3
Or see this region's nucleotide sequence