Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04164 and MPMX20_04165 are separated by 110 nucleotides MPMX20_04165 and MPMX20_04166 overlap by 11 nucleotides MPMX20_04166 and MPMX20_04167 are separated by 11 nucleotides
MPMX20_04164: MPMX20_04164 - Biotin carboxylase, at 4,366,604 to 4,367,953
_04164
MPMX20_04165: MPMX20_04165 - putative membrane protein YhdT, at 4,368,064 to 4,368,306
_04165
MPMX20_04166: MPMX20_04166 - Sodium/pantothenate symporter, at 4,368,296 to 4,369,747
_04166
MPMX20_04167: MPMX20_04167 - Ribosomal protein L11 methyltransferase, at 4,369,759 to 4,370,640
_04167
Position (kb)
4368
4369
4370 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4368.029 kb on - strand at 4368.079 kb on + strand at 4368.079 kb on + strand at 4368.087 kb on - strand at 4368.119 kb on - strand, within MPMX20_04165 at 4368.238 kb on + strand, within MPMX20_04165 at 4368.243 kb on + strand, within MPMX20_04165 at 4368.243 kb on + strand, within MPMX20_04165 at 4368.243 kb on + strand, within MPMX20_04165 at 4368.251 kb on - strand, within MPMX20_04165 at 4368.331 kb on + strand at 4368.375 kb on - strand at 4368.429 kb on + strand at 4368.464 kb on - strand, within MPMX20_04166 at 4368.490 kb on + strand, within MPMX20_04166 at 4368.520 kb on - strand, within MPMX20_04166 at 4368.537 kb on + strand, within MPMX20_04166 at 4368.568 kb on + strand, within MPMX20_04166 at 4368.615 kb on + strand, within MPMX20_04166 at 4368.615 kb on + strand, within MPMX20_04166 at 4368.635 kb on - strand, within MPMX20_04166 at 4368.686 kb on - strand, within MPMX20_04166 at 4368.737 kb on + strand, within MPMX20_04166 at 4368.742 kb on + strand, within MPMX20_04166 at 4368.786 kb on + strand, within MPMX20_04166 at 4368.798 kb on + strand, within MPMX20_04166 at 4368.806 kb on - strand, within MPMX20_04166 at 4368.808 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.928 kb on - strand, within MPMX20_04166 at 4368.928 kb on - strand, within MPMX20_04166 at 4368.979 kb on + strand, within MPMX20_04166 at 4368.986 kb on + strand, within MPMX20_04166 at 4369.005 kb on + strand, within MPMX20_04166 at 4369.018 kb on + strand, within MPMX20_04166 at 4369.035 kb on + strand, within MPMX20_04166 at 4369.043 kb on - strand, within MPMX20_04166 at 4369.043 kb on - strand, within MPMX20_04166 at 4369.043 kb on - strand, within MPMX20_04166 at 4369.054 kb on + strand, within MPMX20_04166 at 4369.088 kb on - strand, within MPMX20_04166 at 4369.090 kb on + strand, within MPMX20_04166 at 4369.098 kb on - strand, within MPMX20_04166 at 4369.141 kb on + strand, within MPMX20_04166 at 4369.159 kb on + strand, within MPMX20_04166 at 4369.194 kb on + strand, within MPMX20_04166 at 4369.194 kb on + strand, within MPMX20_04166 at 4369.225 kb on - strand, within MPMX20_04166 at 4369.259 kb on + strand, within MPMX20_04166 at 4369.350 kb on + strand, within MPMX20_04166 at 4369.357 kb on + strand, within MPMX20_04166 at 4369.372 kb on + strand, within MPMX20_04166 at 4369.441 kb on - strand, within MPMX20_04166 at 4369.476 kb on + strand, within MPMX20_04166 at 4369.550 kb on - strand, within MPMX20_04166 at 4369.552 kb on + strand, within MPMX20_04166 at 4369.559 kb on - strand, within MPMX20_04166 at 4369.576 kb on - strand, within MPMX20_04166 at 4369.590 kb on + strand, within MPMX20_04166 at 4369.597 kb on + strand, within MPMX20_04166 at 4369.605 kb on - strand at 4369.639 kb on + strand at 4369.688 kb on + strand at 4369.780 kb on - strand at 4369.809 kb on + strand at 4369.817 kb on - strand at 4369.817 kb on - strand at 4369.822 kb on - strand at 4369.840 kb on + strand at 4369.919 kb on - strand, within MPMX20_04167 at 4369.989 kb on + strand, within MPMX20_04167 at 4370.219 kb on + strand, within MPMX20_04167 at 4370.338 kb on + strand, within MPMX20_04167 at 4370.346 kb on - strand, within MPMX20_04167 at 4370.346 kb on - strand, within MPMX20_04167 at 4370.360 kb on - strand, within MPMX20_04167 at 4370.392 kb on - strand, within MPMX20_04167 at 4370.412 kb on + strand, within MPMX20_04167 at 4370.412 kb on + strand, within MPMX20_04167 at 4370.492 kb on - strand, within MPMX20_04167 at 4370.586 kb on + strand at 4370.655 kb on + strand at 4370.655 kb on + strand at 4370.663 kb on - strand at 4370.667 kb on + strand at 4370.673 kb on - strand at 4370.675 kb on - strand at 4370.681 kb on + strand at 4370.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,368,029 - +1.0 4,368,079 + -2.0 4,368,079 + -1.9 4,368,087 - -2.2 4,368,119 - MPMX20_04165 0.23 -1.4 4,368,238 + MPMX20_04165 0.72 -0.8 4,368,243 + MPMX20_04165 0.74 -0.9 4,368,243 + MPMX20_04165 0.74 +0.6 4,368,243 + MPMX20_04165 0.74 -0.8 4,368,251 - MPMX20_04165 0.77 -1.0 4,368,331 + +1.6 4,368,375 - -2.0 4,368,429 + -0.2 4,368,464 - MPMX20_04166 0.12 -1.2 4,368,490 + MPMX20_04166 0.13 -1.8 4,368,520 - MPMX20_04166 0.15 +0.6 4,368,537 + MPMX20_04166 0.17 +0.0 4,368,568 + MPMX20_04166 0.19 -0.1 4,368,615 + MPMX20_04166 0.22 -1.6 4,368,615 + MPMX20_04166 0.22 +0.5 4,368,635 - MPMX20_04166 0.23 -0.8 4,368,686 - MPMX20_04166 0.27 -0.7 4,368,737 + MPMX20_04166 0.30 +0.1 4,368,742 + MPMX20_04166 0.31 -1.3 4,368,786 + MPMX20_04166 0.34 -1.4 4,368,798 + MPMX20_04166 0.35 -2.3 4,368,806 - MPMX20_04166 0.35 -0.9 4,368,808 + MPMX20_04166 0.35 +0.0 4,368,920 + MPMX20_04166 0.43 -0.7 4,368,920 + MPMX20_04166 0.43 -1.7 4,368,920 + MPMX20_04166 0.43 -0.2 4,368,920 + MPMX20_04166 0.43 -0.2 4,368,920 + MPMX20_04166 0.43 -1.2 4,368,928 - MPMX20_04166 0.44 -0.9 4,368,928 - MPMX20_04166 0.44 +1.6 4,368,979 + MPMX20_04166 0.47 +0.6 4,368,986 + MPMX20_04166 0.48 -1.2 4,369,005 + MPMX20_04166 0.49 -0.9 4,369,018 + MPMX20_04166 0.50 -1.2 4,369,035 + MPMX20_04166 0.51 -0.4 4,369,043 - MPMX20_04166 0.51 -0.6 4,369,043 - MPMX20_04166 0.51 -0.6 4,369,043 - MPMX20_04166 0.51 +0.3 4,369,054 + MPMX20_04166 0.52 -1.4 4,369,088 - MPMX20_04166 0.55 +0.4 4,369,090 + MPMX20_04166 0.55 +0.8 4,369,098 - MPMX20_04166 0.55 -0.1 4,369,141 + MPMX20_04166 0.58 -1.4 4,369,159 + MPMX20_04166 0.59 +0.4 4,369,194 + MPMX20_04166 0.62 +0.3 4,369,194 + MPMX20_04166 0.62 -1.2 4,369,225 - MPMX20_04166 0.64 +0.3 4,369,259 + MPMX20_04166 0.66 +1.0 4,369,350 + MPMX20_04166 0.73 +0.2 4,369,357 + MPMX20_04166 0.73 +0.1 4,369,372 + MPMX20_04166 0.74 -1.6 4,369,441 - MPMX20_04166 0.79 -1.0 4,369,476 + MPMX20_04166 0.81 -1.2 4,369,550 - MPMX20_04166 0.86 +0.6 4,369,552 + MPMX20_04166 0.87 -0.4 4,369,559 - MPMX20_04166 0.87 -0.9 4,369,576 - MPMX20_04166 0.88 +0.0 4,369,590 + MPMX20_04166 0.89 -0.0 4,369,597 + MPMX20_04166 0.90 -0.9 4,369,605 - +2.6 4,369,639 + +0.0 4,369,688 + +0.8 4,369,780 - -2.2 4,369,809 + +0.6 4,369,817 - -0.9 4,369,817 - -1.3 4,369,822 - -1.0 4,369,840 + +0.0 4,369,919 - MPMX20_04167 0.18 +1.6 4,369,989 + MPMX20_04167 0.26 -0.9 4,370,219 + MPMX20_04167 0.52 +1.6 4,370,338 + MPMX20_04167 0.66 -1.3 4,370,346 - MPMX20_04167 0.67 +0.1 4,370,346 - MPMX20_04167 0.67 +2.0 4,370,360 - MPMX20_04167 0.68 +0.3 4,370,392 - MPMX20_04167 0.72 +0.0 4,370,412 + MPMX20_04167 0.74 -1.1 4,370,412 + MPMX20_04167 0.74 +0.3 4,370,492 - MPMX20_04167 0.83 -1.4 4,370,586 + -1.0 4,370,655 + -0.4 4,370,655 + +1.0 4,370,663 - -0.7 4,370,667 + -0.5 4,370,673 - +1.9 4,370,675 - +0.3 4,370,681 + -0.8 4,370,744 + +0.3
Or see this region's nucleotide sequence