Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04099 and MPMX20_04100 are separated by 4 nucleotides MPMX20_04100 and MPMX20_04101 are separated by 7 nucleotides MPMX20_04101 and MPMX20_04102 are separated by 231 nucleotides
MPMX20_04099: MPMX20_04099 - Intermembrane phospholipid transport system binding protein MlaD, at 4,294,027 to 4,294,575
_04099
MPMX20_04100: MPMX20_04100 - Intermembrane phospholipid transport system permease protein MlaE, at 4,294,580 to 4,295,362
_04100
MPMX20_04101: MPMX20_04101 - Intermembrane phospholipid transport system ATP-binding protein MlaF, at 4,295,370 to 4,296,182
_04101
MPMX20_04102: MPMX20_04102 - Inner membrane protein YrbG, at 4,296,414 to 4,297,391
_04102
Position (kb)
4295
4296
4297 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4294.378 kb on + strand, within MPMX20_04099 at 4294.391 kb on + strand, within MPMX20_04099 at 4294.502 kb on - strand, within MPMX20_04099 at 4294.631 kb on - strand at 4294.631 kb on - strand at 4294.648 kb on - strand at 4294.667 kb on + strand, within MPMX20_04100 at 4294.726 kb on + strand, within MPMX20_04100 at 4294.754 kb on - strand, within MPMX20_04100 at 4294.766 kb on - strand, within MPMX20_04100 at 4294.766 kb on - strand, within MPMX20_04100 at 4294.793 kb on + strand, within MPMX20_04100 at 4294.801 kb on - strand, within MPMX20_04100 at 4294.816 kb on - strand, within MPMX20_04100 at 4294.827 kb on + strand, within MPMX20_04100 at 4294.997 kb on - strand, within MPMX20_04100 at 4295.037 kb on + strand, within MPMX20_04100 at 4295.045 kb on - strand, within MPMX20_04100 at 4295.150 kb on + strand, within MPMX20_04100 at 4295.219 kb on - strand, within MPMX20_04100 at 4295.274 kb on + strand, within MPMX20_04100 at 4295.282 kb on - strand, within MPMX20_04100 at 4295.316 kb on - strand at 4295.332 kb on + strand at 4295.332 kb on + strand at 4295.332 kb on + strand at 4295.338 kb on - strand at 4295.376 kb on - strand at 4295.376 kb on - strand at 4295.426 kb on + strand at 4295.426 kb on + strand at 4295.434 kb on - strand at 4295.434 kb on - strand at 4295.434 kb on - strand at 4295.457 kb on + strand, within MPMX20_04101 at 4295.527 kb on + strand, within MPMX20_04101 at 4295.615 kb on + strand, within MPMX20_04101 at 4295.615 kb on + strand, within MPMX20_04101 at 4295.623 kb on - strand, within MPMX20_04101 at 4295.626 kb on + strand, within MPMX20_04101 at 4295.626 kb on + strand, within MPMX20_04101 at 4295.626 kb on + strand, within MPMX20_04101 at 4295.634 kb on - strand, within MPMX20_04101 at 4295.654 kb on + strand, within MPMX20_04101 at 4295.655 kb on + strand, within MPMX20_04101 at 4295.750 kb on + strand, within MPMX20_04101 at 4295.758 kb on - strand, within MPMX20_04101 at 4295.799 kb on - strand, within MPMX20_04101 at 4295.892 kb on + strand, within MPMX20_04101 at 4295.919 kb on + strand, within MPMX20_04101 at 4295.936 kb on + strand, within MPMX20_04101 at 4295.936 kb on + strand, within MPMX20_04101 at 4295.938 kb on + strand, within MPMX20_04101 at 4295.940 kb on + strand, within MPMX20_04101 at 4295.944 kb on - strand, within MPMX20_04101 at 4295.946 kb on - strand, within MPMX20_04101 at 4296.070 kb on + strand, within MPMX20_04101 at 4296.188 kb on + strand at 4296.222 kb on + strand at 4296.232 kb on + strand at 4296.232 kb on + strand at 4296.240 kb on - strand at 4296.337 kb on + strand at 4296.337 kb on + strand at 4296.337 kb on + strand at 4296.338 kb on + strand at 4296.345 kb on - strand at 4296.345 kb on - strand at 4296.347 kb on + strand at 4296.349 kb on + strand at 4296.349 kb on + strand at 4296.352 kb on - strand at 4296.352 kb on - strand at 4296.371 kb on - strand at 4296.458 kb on + strand at 4296.458 kb on + strand at 4296.461 kb on + strand at 4296.461 kb on + strand at 4296.469 kb on - strand at 4296.469 kb on - strand at 4296.469 kb on - strand at 4296.469 kb on - strand at 4296.490 kb on + strand at 4296.490 kb on + strand at 4296.498 kb on - strand at 4296.503 kb on - strand at 4296.519 kb on - strand, within MPMX20_04102 at 4296.540 kb on + strand, within MPMX20_04102 at 4296.543 kb on - strand, within MPMX20_04102 at 4296.614 kb on - strand, within MPMX20_04102 at 4296.636 kb on + strand, within MPMX20_04102 at 4296.656 kb on - strand, within MPMX20_04102 at 4296.664 kb on + strand, within MPMX20_04102 at 4296.671 kb on - strand, within MPMX20_04102 at 4296.672 kb on - strand, within MPMX20_04102 at 4296.686 kb on - strand, within MPMX20_04102 at 4296.750 kb on - strand, within MPMX20_04102 at 4296.757 kb on - strand, within MPMX20_04102 at 4296.793 kb on - strand, within MPMX20_04102 at 4296.881 kb on - strand, within MPMX20_04102 at 4296.881 kb on - strand, within MPMX20_04102 at 4297.008 kb on - strand, within MPMX20_04102 at 4297.050 kb on - strand, within MPMX20_04102 at 4297.088 kb on + strand, within MPMX20_04102 at 4297.144 kb on - strand, within MPMX20_04102
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,294,378 + MPMX20_04099 0.64 -1.5 4,294,391 + MPMX20_04099 0.66 -2.5 4,294,502 - MPMX20_04099 0.87 -1.2 4,294,631 - -0.5 4,294,631 - -1.4 4,294,648 - +2.3 4,294,667 + MPMX20_04100 0.11 +0.3 4,294,726 + MPMX20_04100 0.19 -1.5 4,294,754 - MPMX20_04100 0.22 -2.5 4,294,766 - MPMX20_04100 0.24 -0.2 4,294,766 - MPMX20_04100 0.24 -0.7 4,294,793 + MPMX20_04100 0.27 -0.4 4,294,801 - MPMX20_04100 0.28 -1.5 4,294,816 - MPMX20_04100 0.30 +2.6 4,294,827 + MPMX20_04100 0.32 -0.4 4,294,997 - MPMX20_04100 0.53 -0.8 4,295,037 + MPMX20_04100 0.58 +0.8 4,295,045 - MPMX20_04100 0.59 +2.5 4,295,150 + MPMX20_04100 0.73 -0.7 4,295,219 - MPMX20_04100 0.82 -2.1 4,295,274 + MPMX20_04100 0.89 -0.5 4,295,282 - MPMX20_04100 0.90 -1.1 4,295,316 - +0.6 4,295,332 + -1.5 4,295,332 + -0.3 4,295,332 + +0.6 4,295,338 - -0.2 4,295,376 - +0.6 4,295,376 - +1.6 4,295,426 + +0.3 4,295,426 + -2.8 4,295,434 - -2.5 4,295,434 - -0.6 4,295,434 - +1.0 4,295,457 + MPMX20_04101 0.11 -0.5 4,295,527 + MPMX20_04101 0.19 -0.4 4,295,615 + MPMX20_04101 0.30 -0.2 4,295,615 + MPMX20_04101 0.30 -0.8 4,295,623 - MPMX20_04101 0.31 -2.8 4,295,626 + MPMX20_04101 0.31 +0.0 4,295,626 + MPMX20_04101 0.31 -1.7 4,295,626 + MPMX20_04101 0.31 +0.2 4,295,634 - MPMX20_04101 0.32 +0.1 4,295,654 + MPMX20_04101 0.35 -2.8 4,295,655 + MPMX20_04101 0.35 -0.4 4,295,750 + MPMX20_04101 0.47 -1.2 4,295,758 - MPMX20_04101 0.48 -1.6 4,295,799 - MPMX20_04101 0.53 -0.4 4,295,892 + MPMX20_04101 0.64 -0.6 4,295,919 + MPMX20_04101 0.68 -1.1 4,295,936 + MPMX20_04101 0.70 -1.9 4,295,936 + MPMX20_04101 0.70 -1.2 4,295,938 + MPMX20_04101 0.70 -2.3 4,295,940 + MPMX20_04101 0.70 -1.2 4,295,944 - MPMX20_04101 0.71 -2.3 4,295,946 - MPMX20_04101 0.71 +0.9 4,296,070 + MPMX20_04101 0.86 -0.5 4,296,188 + +1.6 4,296,222 + +0.1 4,296,232 + -0.9 4,296,232 + +1.4 4,296,240 - -2.4 4,296,337 + -0.2 4,296,337 + -0.6 4,296,337 + -0.9 4,296,338 + +0.6 4,296,345 - +1.6 4,296,345 - +0.8 4,296,347 + -0.9 4,296,349 + -1.8 4,296,349 + +1.0 4,296,352 - -0.2 4,296,352 - +0.0 4,296,371 - +0.1 4,296,458 + -0.7 4,296,458 + -0.5 4,296,461 + -0.3 4,296,461 + +0.2 4,296,469 - -0.5 4,296,469 - -0.1 4,296,469 - +4.3 4,296,469 - -0.4 4,296,490 + +1.0 4,296,490 + +2.6 4,296,498 - +1.6 4,296,503 - +1.8 4,296,519 - MPMX20_04102 0.11 -0.4 4,296,540 + MPMX20_04102 0.13 -0.3 4,296,543 - MPMX20_04102 0.13 -0.6 4,296,614 - MPMX20_04102 0.20 -1.2 4,296,636 + MPMX20_04102 0.23 -2.1 4,296,656 - MPMX20_04102 0.25 +2.6 4,296,664 + MPMX20_04102 0.26 +1.3 4,296,671 - MPMX20_04102 0.26 +0.3 4,296,672 - MPMX20_04102 0.26 -0.5 4,296,686 - MPMX20_04102 0.28 -1.7 4,296,750 - MPMX20_04102 0.34 +0.3 4,296,757 - MPMX20_04102 0.35 +0.6 4,296,793 - MPMX20_04102 0.39 +1.6 4,296,881 - MPMX20_04102 0.48 +0.7 4,296,881 - MPMX20_04102 0.48 +0.0 4,297,008 - MPMX20_04102 0.61 +0.6 4,297,050 - MPMX20_04102 0.65 -1.2 4,297,088 + MPMX20_04102 0.69 -1.0 4,297,144 - MPMX20_04102 0.75 -1.6
Or see this region's nucleotide sequence