Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04004 and MPMX20_04005 are separated by 2 nucleotides MPMX20_04005 and MPMX20_04006 are separated by 143 nucleotides MPMX20_04006 and MPMX20_04007 are separated by 29 nucleotides MPMX20_04007 and MPMX20_04008 are separated by 1 nucleotides
MPMX20_04004: MPMX20_04004 - Inner membrane protein YqjA, at 4,203,511 to 4,204,173
_04004
MPMX20_04005: MPMX20_04005 - Modulator protein MzrA, at 4,204,176 to 4,204,559
_04005
MPMX20_04006: MPMX20_04006 - Protein YqjC, at 4,204,703 to 4,205,071
_04006
MPMX20_04007: MPMX20_04007 - putative protein YqjD, at 4,205,101 to 4,205,406
_04007
MPMX20_04008: MPMX20_04008 - Inner membrane protein YqjE, at 4,205,408 to 4,205,806
_04008
Position (kb)
4204
4205 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4203.234 kb on + strand at 4203.263 kb on + strand at 4203.265 kb on + strand at 4203.316 kb on + strand at 4203.316 kb on + strand at 4203.391 kb on + strand at 4203.396 kb on + strand at 4203.399 kb on - strand at 4203.404 kb on - strand at 4203.404 kb on - strand at 4203.406 kb on + strand at 4203.414 kb on - strand at 4203.419 kb on - strand at 4203.547 kb on - strand at 4203.552 kb on + strand at 4203.573 kb on + strand at 4203.594 kb on + strand, within MPMX20_04004 at 4203.658 kb on + strand, within MPMX20_04004 at 4203.665 kb on + strand, within MPMX20_04004 at 4203.673 kb on - strand, within MPMX20_04004 at 4203.673 kb on - strand, within MPMX20_04004 at 4203.756 kb on - strand, within MPMX20_04004 at 4203.767 kb on + strand, within MPMX20_04004 at 4203.767 kb on + strand, within MPMX20_04004 at 4203.775 kb on - strand, within MPMX20_04004 at 4203.794 kb on + strand, within MPMX20_04004 at 4203.813 kb on - strand, within MPMX20_04004 at 4203.818 kb on - strand, within MPMX20_04004 at 4203.996 kb on + strand, within MPMX20_04004 at 4203.999 kb on - strand, within MPMX20_04004 at 4204.025 kb on + strand, within MPMX20_04004 at 4204.031 kb on - strand, within MPMX20_04004 at 4204.033 kb on - strand, within MPMX20_04004 at 4204.069 kb on - strand, within MPMX20_04004 at 4204.072 kb on + strand, within MPMX20_04004 at 4204.090 kb on - strand, within MPMX20_04004 at 4204.090 kb on - strand, within MPMX20_04004 at 4204.176 kb on - strand at 4204.253 kb on + strand, within MPMX20_04005 at 4204.306 kb on + strand, within MPMX20_04005 at 4204.306 kb on + strand, within MPMX20_04005 at 4204.310 kb on + strand, within MPMX20_04005 at 4204.312 kb on + strand, within MPMX20_04005 at 4204.378 kb on + strand, within MPMX20_04005 at 4204.379 kb on + strand, within MPMX20_04005 at 4204.384 kb on - strand, within MPMX20_04005 at 4204.456 kb on + strand, within MPMX20_04005 at 4204.464 kb on - strand, within MPMX20_04005 at 4204.464 kb on - strand, within MPMX20_04005 at 4204.474 kb on + strand, within MPMX20_04005 at 4204.475 kb on - strand, within MPMX20_04005 at 4204.480 kb on - strand, within MPMX20_04005 at 4204.482 kb on - strand, within MPMX20_04005 at 4204.508 kb on + strand, within MPMX20_04005 at 4204.633 kb on - strand at 4204.635 kb on + strand at 4204.657 kb on + strand at 4204.665 kb on - strand at 4204.685 kb on - strand at 4204.718 kb on + strand at 4204.839 kb on + strand, within MPMX20_04006 at 4204.847 kb on - strand, within MPMX20_04006 at 4204.847 kb on - strand, within MPMX20_04006 at 4204.847 kb on - strand, within MPMX20_04006 at 4204.847 kb on - strand, within MPMX20_04006 at 4204.884 kb on + strand, within MPMX20_04006 at 4204.897 kb on + strand, within MPMX20_04006 at 4205.020 kb on + strand, within MPMX20_04006 at 4205.110 kb on + strand at 4205.167 kb on - strand, within MPMX20_04007 at 4205.167 kb on - strand, within MPMX20_04007 at 4205.228 kb on - strand, within MPMX20_04007 at 4205.228 kb on - strand, within MPMX20_04007 at 4205.252 kb on + strand, within MPMX20_04007 at 4205.252 kb on + strand, within MPMX20_04007 at 4205.252 kb on + strand, within MPMX20_04007 at 4205.287 kb on + strand, within MPMX20_04007 at 4205.355 kb on + strand, within MPMX20_04007 at 4205.355 kb on - strand, within MPMX20_04007 at 4205.361 kb on - strand, within MPMX20_04007 at 4205.380 kb on - strand at 4205.380 kb on - strand at 4205.482 kb on + strand, within MPMX20_04008 at 4205.531 kb on - strand, within MPMX20_04008
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,203,234 + -1.4 4,203,263 + -1.2 4,203,265 + -1.8 4,203,316 + +0.7 4,203,316 + +1.1 4,203,391 + -1.2 4,203,396 + -0.8 4,203,399 - +0.4 4,203,404 - -1.1 4,203,404 - -0.6 4,203,406 + +1.7 4,203,414 - -0.3 4,203,419 - -1.6 4,203,547 - -0.1 4,203,552 + +0.1 4,203,573 + -1.5 4,203,594 + MPMX20_04004 0.13 +0.4 4,203,658 + MPMX20_04004 0.22 -0.5 4,203,665 + MPMX20_04004 0.23 -0.2 4,203,673 - MPMX20_04004 0.24 -2.2 4,203,673 - MPMX20_04004 0.24 -1.7 4,203,756 - MPMX20_04004 0.37 -0.8 4,203,767 + MPMX20_04004 0.39 -1.6 4,203,767 + MPMX20_04004 0.39 +1.1 4,203,775 - MPMX20_04004 0.40 -2.2 4,203,794 + MPMX20_04004 0.43 +0.6 4,203,813 - MPMX20_04004 0.46 +1.1 4,203,818 - MPMX20_04004 0.46 +0.1 4,203,996 + MPMX20_04004 0.73 -1.8 4,203,999 - MPMX20_04004 0.74 +3.1 4,204,025 + MPMX20_04004 0.78 -1.2 4,204,031 - MPMX20_04004 0.78 -1.3 4,204,033 - MPMX20_04004 0.79 +0.2 4,204,069 - MPMX20_04004 0.84 +0.7 4,204,072 + MPMX20_04004 0.85 -0.0 4,204,090 - MPMX20_04004 0.87 +0.4 4,204,090 - MPMX20_04004 0.87 +1.1 4,204,176 - +0.3 4,204,253 + MPMX20_04005 0.20 -1.4 4,204,306 + MPMX20_04005 0.34 -0.6 4,204,306 + MPMX20_04005 0.34 -1.6 4,204,310 + MPMX20_04005 0.35 -0.1 4,204,312 + MPMX20_04005 0.35 -0.8 4,204,378 + MPMX20_04005 0.53 +0.9 4,204,379 + MPMX20_04005 0.53 -1.8 4,204,384 - MPMX20_04005 0.54 -0.3 4,204,456 + MPMX20_04005 0.73 -0.8 4,204,464 - MPMX20_04005 0.75 -0.2 4,204,464 - MPMX20_04005 0.75 -0.9 4,204,474 + MPMX20_04005 0.78 +1.7 4,204,475 - MPMX20_04005 0.78 +0.5 4,204,480 - MPMX20_04005 0.79 -0.8 4,204,482 - MPMX20_04005 0.80 -1.6 4,204,508 + MPMX20_04005 0.86 +0.0 4,204,633 - -0.9 4,204,635 + +1.7 4,204,657 + -1.4 4,204,665 - +0.7 4,204,685 - -0.0 4,204,718 + -0.8 4,204,839 + MPMX20_04006 0.37 -0.3 4,204,847 - MPMX20_04006 0.39 -1.6 4,204,847 - MPMX20_04006 0.39 -1.0 4,204,847 - MPMX20_04006 0.39 -0.2 4,204,847 - MPMX20_04006 0.39 +0.4 4,204,884 + MPMX20_04006 0.49 -1.1 4,204,897 + MPMX20_04006 0.53 +0.1 4,205,020 + MPMX20_04006 0.86 -0.2 4,205,110 + -1.5 4,205,167 - MPMX20_04007 0.22 +1.7 4,205,167 - MPMX20_04007 0.22 -0.5 4,205,228 - MPMX20_04007 0.42 -2.9 4,205,228 - MPMX20_04007 0.42 -0.9 4,205,252 + MPMX20_04007 0.49 +1.0 4,205,252 + MPMX20_04007 0.49 -0.9 4,205,252 + MPMX20_04007 0.49 +0.9 4,205,287 + MPMX20_04007 0.61 -0.3 4,205,355 + MPMX20_04007 0.83 +0.1 4,205,355 - MPMX20_04007 0.83 +0.1 4,205,361 - MPMX20_04007 0.85 +3.6 4,205,380 - -1.7 4,205,380 - -0.1 4,205,482 + MPMX20_04008 0.19 -0.3 4,205,531 - MPMX20_04008 0.31 -1.0
Or see this region's nucleotide sequence