Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03861 and MPMX20_03862 are separated by 118 nucleotides MPMX20_03862 and MPMX20_03863 are separated by 138 nucleotides MPMX20_03863 and MPMX20_03864 overlap by 4 nucleotides
MPMX20_03861: MPMX20_03861 - DNA topoisomerase 4 subunit A, at 4,067,576 to 4,069,834
_03861
MPMX20_03862: MPMX20_03862 - Protein YgiW, at 4,069,953 to 4,070,354
_03862
MPMX20_03863: MPMX20_03863 - Transcriptional regulatory protein QseB, at 4,070,493 to 4,071,152
_03863
MPMX20_03864: MPMX20_03864 - Sensor protein QseC, at 4,071,149 to 4,072,498
_03864
Position (kb)
4070
4071
4072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4069.888 kb on + strand at 4069.896 kb on - strand at 4069.902 kb on - strand at 4069.976 kb on + strand at 4069.984 kb on - strand at 4070.037 kb on + strand, within MPMX20_03862 at 4070.045 kb on + strand, within MPMX20_03862 at 4070.053 kb on - strand, within MPMX20_03862 at 4070.053 kb on - strand, within MPMX20_03862 at 4070.053 kb on - strand, within MPMX20_03862 at 4070.061 kb on + strand, within MPMX20_03862 at 4070.116 kb on + strand, within MPMX20_03862 at 4070.116 kb on + strand, within MPMX20_03862 at 4070.124 kb on - strand, within MPMX20_03862 at 4070.141 kb on + strand, within MPMX20_03862 at 4070.143 kb on - strand, within MPMX20_03862 at 4070.144 kb on - strand, within MPMX20_03862 at 4070.159 kb on + strand, within MPMX20_03862 at 4070.159 kb on + strand, within MPMX20_03862 at 4070.159 kb on + strand, within MPMX20_03862 at 4070.162 kb on + strand, within MPMX20_03862 at 4070.167 kb on - strand, within MPMX20_03862 at 4070.167 kb on - strand, within MPMX20_03862 at 4070.205 kb on + strand, within MPMX20_03862 at 4070.211 kb on - strand, within MPMX20_03862 at 4070.213 kb on - strand, within MPMX20_03862 at 4070.261 kb on + strand, within MPMX20_03862 at 4070.374 kb on - strand at 4070.386 kb on + strand at 4070.386 kb on + strand at 4070.386 kb on + strand at 4070.386 kb on + strand at 4070.394 kb on - strand at 4070.394 kb on - strand at 4070.394 kb on - strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.396 kb on + strand at 4070.404 kb on - strand at 4070.404 kb on - strand at 4070.404 kb on - strand at 4070.442 kb on + strand at 4070.442 kb on + strand at 4070.457 kb on + strand at 4070.460 kb on - strand at 4070.472 kb on - strand at 4070.474 kb on - strand at 4070.515 kb on - strand at 4070.516 kb on - strand at 4070.530 kb on - strand at 4070.542 kb on + strand at 4070.545 kb on - strand at 4070.637 kb on + strand, within MPMX20_03863 at 4070.645 kb on - strand, within MPMX20_03863 at 4070.654 kb on + strand, within MPMX20_03863 at 4070.787 kb on - strand, within MPMX20_03863 at 4070.789 kb on + strand, within MPMX20_03863 at 4070.797 kb on - strand, within MPMX20_03863 at 4070.805 kb on - strand, within MPMX20_03863 at 4070.805 kb on - strand, within MPMX20_03863 at 4070.885 kb on + strand, within MPMX20_03863 at 4070.893 kb on - strand, within MPMX20_03863 at 4070.934 kb on - strand, within MPMX20_03863 at 4070.944 kb on + strand, within MPMX20_03863 at 4070.963 kb on + strand, within MPMX20_03863 at 4071.031 kb on - strand, within MPMX20_03863 at 4071.031 kb on - strand, within MPMX20_03863 at 4071.031 kb on - strand, within MPMX20_03863 at 4071.032 kb on - strand, within MPMX20_03863 at 4071.066 kb on - strand, within MPMX20_03863 at 4071.073 kb on + strand, within MPMX20_03863 at 4071.110 kb on - strand at 4071.123 kb on - strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.130 kb on + strand at 4071.138 kb on - strand at 4071.138 kb on - strand at 4071.138 kb on - strand at 4071.138 kb on - strand at 4071.138 kb on - strand at 4071.138 kb on - strand at 4071.143 kb on - strand at 4071.171 kb on + strand at 4071.171 kb on + strand at 4071.179 kb on - strand at 4071.243 kb on + strand at 4071.243 kb on + strand at 4071.251 kb on - strand at 4071.414 kb on - strand, within MPMX20_03864 at 4071.511 kb on + strand, within MPMX20_03864 at 4071.517 kb on - strand, within MPMX20_03864 at 4071.592 kb on - strand, within MPMX20_03864 at 4071.628 kb on - strand, within MPMX20_03864 at 4071.630 kb on + strand, within MPMX20_03864 at 4071.633 kb on - strand, within MPMX20_03864 at 4071.638 kb on - strand, within MPMX20_03864 at 4071.638 kb on - strand, within MPMX20_03864 at 4071.671 kb on - strand, within MPMX20_03864 at 4071.786 kb on + strand, within MPMX20_03864 at 4071.803 kb on + strand, within MPMX20_03864 at 4071.837 kb on + strand, within MPMX20_03864 at 4071.837 kb on + strand, within MPMX20_03864 at 4071.890 kb on + strand, within MPMX20_03864 at 4071.892 kb on + strand, within MPMX20_03864 at 4071.900 kb on - strand, within MPMX20_03864 at 4071.905 kb on - strand, within MPMX20_03864 at 4072.060 kb on - strand, within MPMX20_03864 at 4072.081 kb on + strand, within MPMX20_03864 at 4072.109 kb on + strand, within MPMX20_03864 at 4072.138 kb on + strand, within MPMX20_03864
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 4,069,888 + -2.1 4,069,896 - -1.5 4,069,902 - +1.1 4,069,976 + -0.1 4,069,984 - -1.5 4,070,037 + MPMX20_03862 0.21 +0.7 4,070,045 + MPMX20_03862 0.23 +0.8 4,070,053 - MPMX20_03862 0.25 +3.7 4,070,053 - MPMX20_03862 0.25 -0.2 4,070,053 - MPMX20_03862 0.25 -0.4 4,070,061 + MPMX20_03862 0.27 +0.9 4,070,116 + MPMX20_03862 0.41 -0.5 4,070,116 + MPMX20_03862 0.41 -1.7 4,070,124 - MPMX20_03862 0.43 +0.4 4,070,141 + MPMX20_03862 0.47 +4.1 4,070,143 - MPMX20_03862 0.47 -0.5 4,070,144 - MPMX20_03862 0.48 +1.1 4,070,159 + MPMX20_03862 0.51 -1.7 4,070,159 + MPMX20_03862 0.51 +0.1 4,070,159 + MPMX20_03862 0.51 -0.6 4,070,162 + MPMX20_03862 0.52 -0.6 4,070,167 - MPMX20_03862 0.53 +0.1 4,070,167 - MPMX20_03862 0.53 +0.4 4,070,205 + MPMX20_03862 0.63 -0.2 4,070,211 - MPMX20_03862 0.64 +0.7 4,070,213 - MPMX20_03862 0.65 +0.7 4,070,261 + MPMX20_03862 0.77 +4.3 4,070,374 - -0.7 4,070,386 + +0.5 4,070,386 + -1.2 4,070,386 + -0.1 4,070,386 + -0.4 4,070,394 - -0.8 4,070,394 - +0.6 4,070,394 - +1.0 4,070,396 + -0.7 4,070,396 + -0.6 4,070,396 + -0.2 4,070,396 + -1.1 4,070,396 + +1.3 4,070,396 + -0.7 4,070,396 + -0.9 4,070,404 - +0.3 4,070,404 - -0.9 4,070,404 - +1.0 4,070,442 + +2.7 4,070,442 + +0.1 4,070,457 + -0.6 4,070,460 - +0.2 4,070,472 - -0.1 4,070,474 - -1.5 4,070,515 - -0.7 4,070,516 - -0.3 4,070,530 - -1.1 4,070,542 + -0.1 4,070,545 - -1.4 4,070,637 + MPMX20_03863 0.22 +0.7 4,070,645 - MPMX20_03863 0.23 -0.5 4,070,654 + MPMX20_03863 0.24 -0.5 4,070,787 - MPMX20_03863 0.45 -0.3 4,070,789 + MPMX20_03863 0.45 +6.1 4,070,797 - MPMX20_03863 0.46 -0.3 4,070,805 - MPMX20_03863 0.47 -0.1 4,070,805 - MPMX20_03863 0.47 -2.1 4,070,885 + MPMX20_03863 0.59 +0.3 4,070,893 - MPMX20_03863 0.61 +1.1 4,070,934 - MPMX20_03863 0.67 +0.2 4,070,944 + MPMX20_03863 0.68 -0.8 4,070,963 + MPMX20_03863 0.71 +1.1 4,071,031 - MPMX20_03863 0.82 -0.3 4,071,031 - MPMX20_03863 0.82 -0.1 4,071,031 - MPMX20_03863 0.82 -0.3 4,071,032 - MPMX20_03863 0.82 +1.7 4,071,066 - MPMX20_03863 0.87 +1.7 4,071,073 + MPMX20_03863 0.88 +0.3 4,071,110 - -0.1 4,071,123 - +1.7 4,071,130 + +0.1 4,071,130 + +2.1 4,071,130 + -1.0 4,071,130 + +0.8 4,071,130 + -0.1 4,071,130 + +0.3 4,071,130 + -0.8 4,071,130 + -0.2 4,071,130 + +0.4 4,071,130 + -0.8 4,071,138 - +0.0 4,071,138 - +0.1 4,071,138 - -0.3 4,071,138 - -1.4 4,071,138 - +2.0 4,071,138 - +0.4 4,071,143 - +0.6 4,071,171 + -0.1 4,071,171 + +0.7 4,071,179 - -0.6 4,071,243 + -1.1 4,071,243 + +2.4 4,071,251 - -2.3 4,071,414 - MPMX20_03864 0.20 +0.3 4,071,511 + MPMX20_03864 0.27 -1.2 4,071,517 - MPMX20_03864 0.27 -0.6 4,071,592 - MPMX20_03864 0.33 +1.0 4,071,628 - MPMX20_03864 0.35 -2.5 4,071,630 + MPMX20_03864 0.36 -0.9 4,071,633 - MPMX20_03864 0.36 -2.0 4,071,638 - MPMX20_03864 0.36 -0.1 4,071,638 - MPMX20_03864 0.36 -0.6 4,071,671 - MPMX20_03864 0.39 +0.9 4,071,786 + MPMX20_03864 0.47 +0.7 4,071,803 + MPMX20_03864 0.48 +0.4 4,071,837 + MPMX20_03864 0.51 +0.1 4,071,837 + MPMX20_03864 0.51 -0.2 4,071,890 + MPMX20_03864 0.55 -0.4 4,071,892 + MPMX20_03864 0.55 -0.9 4,071,900 - MPMX20_03864 0.56 +0.1 4,071,905 - MPMX20_03864 0.56 +1.7 4,072,060 - MPMX20_03864 0.67 -2.8 4,072,081 + MPMX20_03864 0.69 +2.7 4,072,109 + MPMX20_03864 0.71 +0.1 4,072,138 + MPMX20_03864 0.73 +1.3
Or see this region's nucleotide sequence