Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03863

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03861 and MPMX20_03862 are separated by 118 nucleotidesMPMX20_03862 and MPMX20_03863 are separated by 138 nucleotidesMPMX20_03863 and MPMX20_03864 overlap by 4 nucleotides MPMX20_03861: MPMX20_03861 - DNA topoisomerase 4 subunit A, at 4,067,576 to 4,069,834 _03861 MPMX20_03862: MPMX20_03862 - Protein YgiW, at 4,069,953 to 4,070,354 _03862 MPMX20_03863: MPMX20_03863 - Transcriptional regulatory protein QseB, at 4,070,493 to 4,071,152 _03863 MPMX20_03864: MPMX20_03864 - Sensor protein QseC, at 4,071,149 to 4,072,498 _03864 Position (kb) 4070 4071 4072Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4069.888 kb on + strandat 4069.896 kb on - strandat 4069.902 kb on - strandat 4069.976 kb on + strandat 4069.984 kb on - strandat 4070.037 kb on + strand, within MPMX20_03862at 4070.045 kb on + strand, within MPMX20_03862at 4070.053 kb on - strand, within MPMX20_03862at 4070.053 kb on - strand, within MPMX20_03862at 4070.053 kb on - strand, within MPMX20_03862at 4070.061 kb on + strand, within MPMX20_03862at 4070.116 kb on + strand, within MPMX20_03862at 4070.116 kb on + strand, within MPMX20_03862at 4070.124 kb on - strand, within MPMX20_03862at 4070.141 kb on + strand, within MPMX20_03862at 4070.143 kb on - strand, within MPMX20_03862at 4070.144 kb on - strand, within MPMX20_03862at 4070.159 kb on + strand, within MPMX20_03862at 4070.159 kb on + strand, within MPMX20_03862at 4070.159 kb on + strand, within MPMX20_03862at 4070.162 kb on + strand, within MPMX20_03862at 4070.167 kb on - strand, within MPMX20_03862at 4070.167 kb on - strand, within MPMX20_03862at 4070.205 kb on + strand, within MPMX20_03862at 4070.211 kb on - strand, within MPMX20_03862at 4070.213 kb on - strand, within MPMX20_03862at 4070.261 kb on + strand, within MPMX20_03862at 4070.374 kb on - strandat 4070.386 kb on + strandat 4070.386 kb on + strandat 4070.386 kb on + strandat 4070.386 kb on + strandat 4070.394 kb on - strandat 4070.394 kb on - strandat 4070.394 kb on - strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.396 kb on + strandat 4070.404 kb on - strandat 4070.404 kb on - strandat 4070.404 kb on - strandat 4070.442 kb on + strandat 4070.442 kb on + strandat 4070.457 kb on + strandat 4070.460 kb on - strandat 4070.472 kb on - strandat 4070.474 kb on - strandat 4070.515 kb on - strandat 4070.516 kb on - strandat 4070.530 kb on - strandat 4070.542 kb on + strandat 4070.545 kb on - strandat 4070.637 kb on + strand, within MPMX20_03863at 4070.645 kb on - strand, within MPMX20_03863at 4070.654 kb on + strand, within MPMX20_03863at 4070.787 kb on - strand, within MPMX20_03863at 4070.789 kb on + strand, within MPMX20_03863at 4070.797 kb on - strand, within MPMX20_03863at 4070.805 kb on - strand, within MPMX20_03863at 4070.805 kb on - strand, within MPMX20_03863at 4070.885 kb on + strand, within MPMX20_03863at 4070.893 kb on - strand, within MPMX20_03863at 4070.934 kb on - strand, within MPMX20_03863at 4070.944 kb on + strand, within MPMX20_03863at 4070.963 kb on + strand, within MPMX20_03863at 4071.031 kb on - strand, within MPMX20_03863at 4071.031 kb on - strand, within MPMX20_03863at 4071.031 kb on - strand, within MPMX20_03863at 4071.032 kb on - strand, within MPMX20_03863at 4071.066 kb on - strand, within MPMX20_03863at 4071.073 kb on + strand, within MPMX20_03863at 4071.110 kb on - strandat 4071.123 kb on - strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.130 kb on + strandat 4071.138 kb on - strandat 4071.138 kb on - strandat 4071.138 kb on - strandat 4071.138 kb on - strandat 4071.138 kb on - strandat 4071.138 kb on - strandat 4071.143 kb on - strandat 4071.171 kb on + strandat 4071.171 kb on + strandat 4071.179 kb on - strandat 4071.243 kb on + strandat 4071.243 kb on + strandat 4071.251 kb on - strandat 4071.414 kb on - strand, within MPMX20_03864at 4071.511 kb on + strand, within MPMX20_03864at 4071.517 kb on - strand, within MPMX20_03864at 4071.592 kb on - strand, within MPMX20_03864at 4071.628 kb on - strand, within MPMX20_03864at 4071.630 kb on + strand, within MPMX20_03864at 4071.633 kb on - strand, within MPMX20_03864at 4071.638 kb on - strand, within MPMX20_03864at 4071.638 kb on - strand, within MPMX20_03864at 4071.671 kb on - strand, within MPMX20_03864at 4071.786 kb on + strand, within MPMX20_03864at 4071.803 kb on + strand, within MPMX20_03864at 4071.837 kb on + strand, within MPMX20_03864at 4071.837 kb on + strand, within MPMX20_03864at 4071.890 kb on + strand, within MPMX20_03864at 4071.892 kb on + strand, within MPMX20_03864at 4071.900 kb on - strand, within MPMX20_03864at 4071.905 kb on - strand, within MPMX20_03864at 4072.060 kb on - strand, within MPMX20_03864at 4072.081 kb on + strand, within MPMX20_03864at 4072.109 kb on + strand, within MPMX20_03864at 4072.138 kb on + strand, within MPMX20_03864

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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4,069,888 + -2.1
4,069,896 - -1.5
4,069,902 - +1.1
4,069,976 + -0.1
4,069,984 - -1.5
4,070,037 + MPMX20_03862 0.21 +0.7
4,070,045 + MPMX20_03862 0.23 +0.8
4,070,053 - MPMX20_03862 0.25 +3.7
4,070,053 - MPMX20_03862 0.25 -0.2
4,070,053 - MPMX20_03862 0.25 -0.4
4,070,061 + MPMX20_03862 0.27 +0.9
4,070,116 + MPMX20_03862 0.41 -0.5
4,070,116 + MPMX20_03862 0.41 -1.7
4,070,124 - MPMX20_03862 0.43 +0.4
4,070,141 + MPMX20_03862 0.47 +4.1
4,070,143 - MPMX20_03862 0.47 -0.5
4,070,144 - MPMX20_03862 0.48 +1.1
4,070,159 + MPMX20_03862 0.51 -1.7
4,070,159 + MPMX20_03862 0.51 +0.1
4,070,159 + MPMX20_03862 0.51 -0.6
4,070,162 + MPMX20_03862 0.52 -0.6
4,070,167 - MPMX20_03862 0.53 +0.1
4,070,167 - MPMX20_03862 0.53 +0.4
4,070,205 + MPMX20_03862 0.63 -0.2
4,070,211 - MPMX20_03862 0.64 +0.7
4,070,213 - MPMX20_03862 0.65 +0.7
4,070,261 + MPMX20_03862 0.77 +4.3
4,070,374 - -0.7
4,070,386 + +0.5
4,070,386 + -1.2
4,070,386 + -0.1
4,070,386 + -0.4
4,070,394 - -0.8
4,070,394 - +0.6
4,070,394 - +1.0
4,070,396 + -0.7
4,070,396 + -0.6
4,070,396 + -0.2
4,070,396 + -1.1
4,070,396 + +1.3
4,070,396 + -0.7
4,070,396 + -0.9
4,070,404 - +0.3
4,070,404 - -0.9
4,070,404 - +1.0
4,070,442 + +2.7
4,070,442 + +0.1
4,070,457 + -0.6
4,070,460 - +0.2
4,070,472 - -0.1
4,070,474 - -1.5
4,070,515 - -0.7
4,070,516 - -0.3
4,070,530 - -1.1
4,070,542 + -0.1
4,070,545 - -1.4
4,070,637 + MPMX20_03863 0.22 +0.7
4,070,645 - MPMX20_03863 0.23 -0.5
4,070,654 + MPMX20_03863 0.24 -0.5
4,070,787 - MPMX20_03863 0.45 -0.3
4,070,789 + MPMX20_03863 0.45 +6.1
4,070,797 - MPMX20_03863 0.46 -0.3
4,070,805 - MPMX20_03863 0.47 -0.1
4,070,805 - MPMX20_03863 0.47 -2.1
4,070,885 + MPMX20_03863 0.59 +0.3
4,070,893 - MPMX20_03863 0.61 +1.1
4,070,934 - MPMX20_03863 0.67 +0.2
4,070,944 + MPMX20_03863 0.68 -0.8
4,070,963 + MPMX20_03863 0.71 +1.1
4,071,031 - MPMX20_03863 0.82 -0.3
4,071,031 - MPMX20_03863 0.82 -0.1
4,071,031 - MPMX20_03863 0.82 -0.3
4,071,032 - MPMX20_03863 0.82 +1.7
4,071,066 - MPMX20_03863 0.87 +1.7
4,071,073 + MPMX20_03863 0.88 +0.3
4,071,110 - -0.1
4,071,123 - +1.7
4,071,130 + +0.1
4,071,130 + +2.1
4,071,130 + -1.0
4,071,130 + +0.8
4,071,130 + -0.1
4,071,130 + +0.3
4,071,130 + -0.8
4,071,130 + -0.2
4,071,130 + +0.4
4,071,130 + -0.8
4,071,138 - +0.0
4,071,138 - +0.1
4,071,138 - -0.3
4,071,138 - -1.4
4,071,138 - +2.0
4,071,138 - +0.4
4,071,143 - +0.6
4,071,171 + -0.1
4,071,171 + +0.7
4,071,179 - -0.6
4,071,243 + -1.1
4,071,243 + +2.4
4,071,251 - -2.3
4,071,414 - MPMX20_03864 0.20 +0.3
4,071,511 + MPMX20_03864 0.27 -1.2
4,071,517 - MPMX20_03864 0.27 -0.6
4,071,592 - MPMX20_03864 0.33 +1.0
4,071,628 - MPMX20_03864 0.35 -2.5
4,071,630 + MPMX20_03864 0.36 -0.9
4,071,633 - MPMX20_03864 0.36 -2.0
4,071,638 - MPMX20_03864 0.36 -0.1
4,071,638 - MPMX20_03864 0.36 -0.6
4,071,671 - MPMX20_03864 0.39 +0.9
4,071,786 + MPMX20_03864 0.47 +0.7
4,071,803 + MPMX20_03864 0.48 +0.4
4,071,837 + MPMX20_03864 0.51 +0.1
4,071,837 + MPMX20_03864 0.51 -0.2
4,071,890 + MPMX20_03864 0.55 -0.4
4,071,892 + MPMX20_03864 0.55 -0.9
4,071,900 - MPMX20_03864 0.56 +0.1
4,071,905 - MPMX20_03864 0.56 +1.7
4,072,060 - MPMX20_03864 0.67 -2.8
4,072,081 + MPMX20_03864 0.69 +2.7
4,072,109 + MPMX20_03864 0.71 +0.1
4,072,138 + MPMX20_03864 0.73 +1.3

Or see this region's nucleotide sequence