Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03674

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03673 and MPMX20_03674 overlap by 1 nucleotidesMPMX20_03674 and MPMX20_03675 overlap by 10 nucleotidesMPMX20_03675 and MPMX20_03676 are separated by 76 nucleotides MPMX20_03673: MPMX20_03673 - Cysteine desulfurase CsdA, at 3,867,937 to 3,869,142 _03673 MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588 _03674 MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385 _03675 MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559 _03676 Position (kb) 3869 3870Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3868.156 kb on + strand, within MPMX20_03673at 3868.221 kb on - strand, within MPMX20_03673at 3868.228 kb on + strand, within MPMX20_03673at 3868.228 kb on + strand, within MPMX20_03673at 3868.233 kb on + strand, within MPMX20_03673at 3868.236 kb on - strand, within MPMX20_03673at 3868.241 kb on - strand, within MPMX20_03673at 3868.291 kb on - strand, within MPMX20_03673at 3868.471 kb on - strand, within MPMX20_03673at 3868.528 kb on + strand, within MPMX20_03673at 3868.536 kb on - strand, within MPMX20_03673at 3868.610 kb on + strand, within MPMX20_03673at 3868.618 kb on - strand, within MPMX20_03673at 3868.619 kb on + strand, within MPMX20_03673at 3868.689 kb on - strand, within MPMX20_03673at 3868.711 kb on - strand, within MPMX20_03673at 3868.711 kb on - strand, within MPMX20_03673at 3868.739 kb on - strand, within MPMX20_03673at 3868.761 kb on - strand, within MPMX20_03673at 3868.811 kb on - strand, within MPMX20_03673at 3868.910 kb on + strand, within MPMX20_03673at 3868.918 kb on - strand, within MPMX20_03673at 3868.948 kb on - strand, within MPMX20_03673at 3868.961 kb on - strand, within MPMX20_03673at 3868.982 kb on + strand, within MPMX20_03673at 3869.007 kb on - strand, within MPMX20_03673at 3869.007 kb on - strand, within MPMX20_03673at 3869.050 kb on - strandat 3869.068 kb on - strandat 3869.070 kb on + strandat 3869.100 kb on + strandat 3869.108 kb on - strandat 3869.386 kb on + strand, within MPMX20_03674at 3869.446 kb on - strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.527 kb on + strand, within MPMX20_03674at 3869.564 kb on - strandat 3869.595 kb on + strandat 3869.941 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.035 kb on - strand, within MPMX20_03675at 3870.076 kb on - strand, within MPMX20_03675at 3870.129 kb on + strand, within MPMX20_03675at 3870.147 kb on - strand, within MPMX20_03675at 3870.157 kb on + strand, within MPMX20_03675at 3870.157 kb on + strand, within MPMX20_03675at 3870.260 kb on - strand, within MPMX20_03675at 3870.287 kb on + strand, within MPMX20_03675at 3870.339 kb on - strandat 3870.376 kb on - strandat 3870.391 kb on - strandat 3870.405 kb on - strandat 3870.441 kb on + strandat 3870.446 kb on + strandat 3870.499 kb on - strandat 3870.504 kb on - strandat 3870.524 kb on + strandat 3870.532 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
remove
3,868,156 + MPMX20_03673 0.18 +0.7
3,868,221 - MPMX20_03673 0.24 -1.3
3,868,228 + MPMX20_03673 0.24 +0.2
3,868,228 + MPMX20_03673 0.24 +0.4
3,868,233 + MPMX20_03673 0.25 -0.6
3,868,236 - MPMX20_03673 0.25 -2.3
3,868,241 - MPMX20_03673 0.25 -0.8
3,868,291 - MPMX20_03673 0.29 +0.3
3,868,471 - MPMX20_03673 0.44 -0.6
3,868,528 + MPMX20_03673 0.49 -0.4
3,868,536 - MPMX20_03673 0.50 +0.9
3,868,610 + MPMX20_03673 0.56 -1.2
3,868,618 - MPMX20_03673 0.56 +0.2
3,868,619 + MPMX20_03673 0.57 +0.7
3,868,689 - MPMX20_03673 0.62 -1.4
3,868,711 - MPMX20_03673 0.64 +1.7
3,868,711 - MPMX20_03673 0.64 +0.7
3,868,739 - MPMX20_03673 0.67 -0.1
3,868,761 - MPMX20_03673 0.68 -0.3
3,868,811 - MPMX20_03673 0.72 +1.4
3,868,910 + MPMX20_03673 0.81 -1.0
3,868,918 - MPMX20_03673 0.81 +0.0
3,868,948 - MPMX20_03673 0.84 -1.9
3,868,961 - MPMX20_03673 0.85 -2.3
3,868,982 + MPMX20_03673 0.87 -1.0
3,869,007 - MPMX20_03673 0.89 +0.0
3,869,007 - MPMX20_03673 0.89 +0.2
3,869,050 - +0.0
3,869,068 - -0.1
3,869,070 + +0.6
3,869,100 + -0.3
3,869,108 - +0.2
3,869,386 + MPMX20_03674 0.55 -2.7
3,869,446 - MPMX20_03674 0.68 -1.7
3,869,510 + MPMX20_03674 0.82 +0.9
3,869,510 + MPMX20_03674 0.82 -1.0
3,869,527 + MPMX20_03674 0.86 -1.9
3,869,564 - +0.3
3,869,595 + -1.1
3,869,941 + MPMX20_03675 0.45 +0.4
3,870,017 + MPMX20_03675 0.54 +0.4
3,870,017 + MPMX20_03675 0.54 +1.7
3,870,017 + MPMX20_03675 0.54 -1.6
3,870,035 - MPMX20_03675 0.57 -0.4
3,870,076 - MPMX20_03675 0.62 -1.5
3,870,129 + MPMX20_03675 0.68 -0.1
3,870,147 - MPMX20_03675 0.70 +3.7
3,870,157 + MPMX20_03675 0.72 -0.4
3,870,157 + MPMX20_03675 0.72 +0.2
3,870,260 - MPMX20_03675 0.84 -0.3
3,870,287 + MPMX20_03675 0.88 -1.0
3,870,339 - -2.3
3,870,376 - +1.2
3,870,391 - -1.5
3,870,405 - +0.1
3,870,441 + +0.4
3,870,446 + +0.7
3,870,499 - +0.0
3,870,504 - -0.8
3,870,524 + +0.4
3,870,532 - -1.0

Or see this region's nucleotide sequence