Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03673 and MPMX20_03674 overlap by 1 nucleotides MPMX20_03674 and MPMX20_03675 overlap by 10 nucleotides MPMX20_03675 and MPMX20_03676 are separated by 76 nucleotides
MPMX20_03673: MPMX20_03673 - Cysteine desulfurase CsdA, at 3,867,937 to 3,869,142
_03673
MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588
_03674
MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385
_03675
MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559
_03676
Position (kb)
3869
3870 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3868.156 kb on + strand, within MPMX20_03673 at 3868.221 kb on - strand, within MPMX20_03673 at 3868.228 kb on + strand, within MPMX20_03673 at 3868.228 kb on + strand, within MPMX20_03673 at 3868.233 kb on + strand, within MPMX20_03673 at 3868.236 kb on - strand, within MPMX20_03673 at 3868.241 kb on - strand, within MPMX20_03673 at 3868.291 kb on - strand, within MPMX20_03673 at 3868.471 kb on - strand, within MPMX20_03673 at 3868.528 kb on + strand, within MPMX20_03673 at 3868.536 kb on - strand, within MPMX20_03673 at 3868.610 kb on + strand, within MPMX20_03673 at 3868.618 kb on - strand, within MPMX20_03673 at 3868.619 kb on + strand, within MPMX20_03673 at 3868.689 kb on - strand, within MPMX20_03673 at 3868.711 kb on - strand, within MPMX20_03673 at 3868.711 kb on - strand, within MPMX20_03673 at 3868.739 kb on - strand, within MPMX20_03673 at 3868.761 kb on - strand, within MPMX20_03673 at 3868.811 kb on - strand, within MPMX20_03673 at 3868.910 kb on + strand, within MPMX20_03673 at 3868.918 kb on - strand, within MPMX20_03673 at 3868.948 kb on - strand, within MPMX20_03673 at 3868.961 kb on - strand, within MPMX20_03673 at 3868.982 kb on + strand, within MPMX20_03673 at 3869.007 kb on - strand, within MPMX20_03673 at 3869.007 kb on - strand, within MPMX20_03673 at 3869.050 kb on - strand at 3869.068 kb on - strand at 3869.070 kb on + strand at 3869.100 kb on + strand at 3869.108 kb on - strand at 3869.386 kb on + strand, within MPMX20_03674 at 3869.446 kb on - strand, within MPMX20_03674 at 3869.510 kb on + strand, within MPMX20_03674 at 3869.510 kb on + strand, within MPMX20_03674 at 3869.527 kb on + strand, within MPMX20_03674 at 3869.564 kb on - strand at 3869.595 kb on + strand at 3869.941 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.035 kb on - strand, within MPMX20_03675 at 3870.076 kb on - strand, within MPMX20_03675 at 3870.129 kb on + strand, within MPMX20_03675 at 3870.147 kb on - strand, within MPMX20_03675 at 3870.157 kb on + strand, within MPMX20_03675 at 3870.157 kb on + strand, within MPMX20_03675 at 3870.260 kb on - strand, within MPMX20_03675 at 3870.287 kb on + strand, within MPMX20_03675 at 3870.339 kb on - strand at 3870.376 kb on - strand at 3870.391 kb on - strand at 3870.405 kb on - strand at 3870.441 kb on + strand at 3870.446 kb on + strand at 3870.499 kb on - strand at 3870.504 kb on - strand at 3870.524 kb on + strand at 3870.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,868,156 + MPMX20_03673 0.18 +0.7 3,868,221 - MPMX20_03673 0.24 -1.3 3,868,228 + MPMX20_03673 0.24 +0.2 3,868,228 + MPMX20_03673 0.24 +0.4 3,868,233 + MPMX20_03673 0.25 -0.6 3,868,236 - MPMX20_03673 0.25 -2.3 3,868,241 - MPMX20_03673 0.25 -0.8 3,868,291 - MPMX20_03673 0.29 +0.3 3,868,471 - MPMX20_03673 0.44 -0.6 3,868,528 + MPMX20_03673 0.49 -0.4 3,868,536 - MPMX20_03673 0.50 +0.9 3,868,610 + MPMX20_03673 0.56 -1.2 3,868,618 - MPMX20_03673 0.56 +0.2 3,868,619 + MPMX20_03673 0.57 +0.7 3,868,689 - MPMX20_03673 0.62 -1.4 3,868,711 - MPMX20_03673 0.64 +1.7 3,868,711 - MPMX20_03673 0.64 +0.7 3,868,739 - MPMX20_03673 0.67 -0.1 3,868,761 - MPMX20_03673 0.68 -0.3 3,868,811 - MPMX20_03673 0.72 +1.4 3,868,910 + MPMX20_03673 0.81 -1.0 3,868,918 - MPMX20_03673 0.81 +0.0 3,868,948 - MPMX20_03673 0.84 -1.9 3,868,961 - MPMX20_03673 0.85 -2.3 3,868,982 + MPMX20_03673 0.87 -1.0 3,869,007 - MPMX20_03673 0.89 +0.0 3,869,007 - MPMX20_03673 0.89 +0.2 3,869,050 - +0.0 3,869,068 - -0.1 3,869,070 + +0.6 3,869,100 + -0.3 3,869,108 - +0.2 3,869,386 + MPMX20_03674 0.55 -2.7 3,869,446 - MPMX20_03674 0.68 -1.7 3,869,510 + MPMX20_03674 0.82 +0.9 3,869,510 + MPMX20_03674 0.82 -1.0 3,869,527 + MPMX20_03674 0.86 -1.9 3,869,564 - +0.3 3,869,595 + -1.1 3,869,941 + MPMX20_03675 0.45 +0.4 3,870,017 + MPMX20_03675 0.54 +0.4 3,870,017 + MPMX20_03675 0.54 +1.7 3,870,017 + MPMX20_03675 0.54 -1.6 3,870,035 - MPMX20_03675 0.57 -0.4 3,870,076 - MPMX20_03675 0.62 -1.5 3,870,129 + MPMX20_03675 0.68 -0.1 3,870,147 - MPMX20_03675 0.70 +3.7 3,870,157 + MPMX20_03675 0.72 -0.4 3,870,157 + MPMX20_03675 0.72 +0.2 3,870,260 - MPMX20_03675 0.84 -0.3 3,870,287 + MPMX20_03675 0.88 -1.0 3,870,339 - -2.3 3,870,376 - +1.2 3,870,391 - -1.5 3,870,405 - +0.1 3,870,441 + +0.4 3,870,446 + +0.7 3,870,499 - +0.0 3,870,504 - -0.8 3,870,524 + +0.4 3,870,532 - -1.0
Or see this region's nucleotide sequence