Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03603 and MPMX20_03604 overlap by 4 nucleotides MPMX20_03604 and MPMX20_03605 overlap by 1 nucleotides MPMX20_03605 and MPMX20_03606 are separated by 93 nucleotides
MPMX20_03603: MPMX20_03603 - hypothetical protein, at 3,793,878 to 3,794,288
_03603
MPMX20_03604: MPMX20_03604 - Formate hydrogenlyase subunit 7, at 3,794,285 to 3,795,052
_03604
MPMX20_03605: MPMX20_03605 - NAD(P)H-quinone oxidoreductase subunit I, chloroplastic, at 3,795,052 to 3,795,594
_03605
MPMX20_03606: MPMX20_03606 - Formate hydrogenlyase subunit 5, at 3,795,688 to 3,797,397
_03606
Position (kb)
3795
3796 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3794.086 kb on + strand, within MPMX20_03603 at 3794.092 kb on + strand, within MPMX20_03603 at 3794.094 kb on - strand, within MPMX20_03603 at 3794.096 kb on + strand, within MPMX20_03603 at 3794.096 kb on + strand, within MPMX20_03603 at 3794.096 kb on + strand, within MPMX20_03603 at 3794.100 kb on - strand, within MPMX20_03603 at 3794.104 kb on - strand, within MPMX20_03603 at 3794.104 kb on - strand, within MPMX20_03603 at 3794.118 kb on - strand, within MPMX20_03603 at 3794.128 kb on + strand, within MPMX20_03603 at 3794.147 kb on - strand, within MPMX20_03603 at 3794.147 kb on - strand, within MPMX20_03603 at 3794.160 kb on + strand, within MPMX20_03603 at 3794.167 kb on + strand, within MPMX20_03603 at 3794.175 kb on + strand, within MPMX20_03603 at 3794.204 kb on - strand, within MPMX20_03603 at 3794.230 kb on + strand, within MPMX20_03603 at 3794.230 kb on + strand, within MPMX20_03603 at 3794.238 kb on - strand, within MPMX20_03603 at 3794.367 kb on - strand, within MPMX20_03604 at 3794.367 kb on - strand, within MPMX20_03604 at 3794.380 kb on + strand, within MPMX20_03604 at 3794.490 kb on + strand, within MPMX20_03604 at 3794.539 kb on + strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.547 kb on - strand, within MPMX20_03604 at 3794.666 kb on - strand, within MPMX20_03604 at 3794.673 kb on + strand, within MPMX20_03604 at 3794.673 kb on + strand, within MPMX20_03604 at 3794.675 kb on + strand, within MPMX20_03604 at 3794.680 kb on + strand, within MPMX20_03604 at 3794.680 kb on + strand, within MPMX20_03604 at 3794.681 kb on - strand, within MPMX20_03604 at 3794.681 kb on - strand, within MPMX20_03604 at 3794.681 kb on - strand, within MPMX20_03604 at 3794.705 kb on + strand, within MPMX20_03604 at 3794.929 kb on - strand, within MPMX20_03604 at 3794.971 kb on + strand, within MPMX20_03604 at 3795.076 kb on + strand at 3795.115 kb on - strand, within MPMX20_03605 at 3795.174 kb on - strand, within MPMX20_03605 at 3795.380 kb on + strand, within MPMX20_03605 at 3795.480 kb on + strand, within MPMX20_03605 at 3795.486 kb on - strand, within MPMX20_03605 at 3795.486 kb on - strand, within MPMX20_03605 at 3795.488 kb on - strand, within MPMX20_03605 at 3795.630 kb on + strand at 3795.652 kb on + strand at 3795.652 kb on + strand at 3795.666 kb on - strand at 3795.666 kb on - strand at 3795.854 kb on - strand at 3795.881 kb on - strand, within MPMX20_03606 at 3795.952 kb on - strand, within MPMX20_03606 at 3795.990 kb on - strand, within MPMX20_03606 at 3796.005 kb on - strand, within MPMX20_03606 at 3796.043 kb on + strand, within MPMX20_03606 at 3796.061 kb on - strand, within MPMX20_03606 at 3796.078 kb on + strand, within MPMX20_03606 at 3796.134 kb on - strand, within MPMX20_03606 at 3796.145 kb on + strand, within MPMX20_03606 at 3796.145 kb on + strand, within MPMX20_03606 at 3796.145 kb on + strand, within MPMX20_03606 at 3796.145 kb on + strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.153 kb on - strand, within MPMX20_03606 at 3796.166 kb on - strand, within MPMX20_03606 at 3796.218 kb on + strand, within MPMX20_03606 at 3796.223 kb on + strand, within MPMX20_03606 at 3796.279 kb on - strand, within MPMX20_03606 at 3796.295 kb on - strand, within MPMX20_03606 at 3796.324 kb on + strand, within MPMX20_03606 at 3796.334 kb on - strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.533 kb on - strand, within MPMX20_03606 at 3796.593 kb on - strand, within MPMX20_03606
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,794,086 + MPMX20_03603 0.51 +0.3 3,794,092 + MPMX20_03603 0.52 +0.6 3,794,094 - MPMX20_03603 0.53 -1.8 3,794,096 + MPMX20_03603 0.53 +0.1 3,794,096 + MPMX20_03603 0.53 -0.6 3,794,096 + MPMX20_03603 0.53 -1.2 3,794,100 - MPMX20_03603 0.54 -1.1 3,794,104 - MPMX20_03603 0.55 -1.1 3,794,104 - MPMX20_03603 0.55 +1.1 3,794,118 - MPMX20_03603 0.58 -0.3 3,794,128 + MPMX20_03603 0.61 -1.2 3,794,147 - MPMX20_03603 0.65 +2.7 3,794,147 - MPMX20_03603 0.65 -0.7 3,794,160 + MPMX20_03603 0.69 -1.2 3,794,167 + MPMX20_03603 0.70 -0.8 3,794,175 + MPMX20_03603 0.72 +0.7 3,794,204 - MPMX20_03603 0.79 +0.4 3,794,230 + MPMX20_03603 0.86 -0.7 3,794,230 + MPMX20_03603 0.86 +0.2 3,794,238 - MPMX20_03603 0.88 -0.7 3,794,367 - MPMX20_03604 0.11 +0.4 3,794,367 - MPMX20_03604 0.11 -1.5 3,794,380 + MPMX20_03604 0.12 +0.2 3,794,490 + MPMX20_03604 0.27 +0.7 3,794,539 + MPMX20_03604 0.33 -1.8 3,794,547 - MPMX20_03604 0.34 -2.0 3,794,547 - MPMX20_03604 0.34 -0.3 3,794,547 - MPMX20_03604 0.34 -1.9 3,794,547 - MPMX20_03604 0.34 -0.9 3,794,666 - MPMX20_03604 0.50 +0.7 3,794,673 + MPMX20_03604 0.51 +0.4 3,794,673 + MPMX20_03604 0.51 -0.3 3,794,675 + MPMX20_03604 0.51 -1.1 3,794,680 + MPMX20_03604 0.51 -0.4 3,794,680 + MPMX20_03604 0.51 -0.1 3,794,681 - MPMX20_03604 0.52 -0.1 3,794,681 - MPMX20_03604 0.52 -1.0 3,794,681 - MPMX20_03604 0.52 +0.0 3,794,705 + MPMX20_03604 0.55 +1.7 3,794,929 - MPMX20_03604 0.84 -1.9 3,794,971 + MPMX20_03604 0.89 +1.4 3,795,076 + -0.9 3,795,115 - MPMX20_03605 0.12 -1.4 3,795,174 - MPMX20_03605 0.22 -1.5 3,795,380 + MPMX20_03605 0.60 +2.1 3,795,480 + MPMX20_03605 0.79 -0.6 3,795,486 - MPMX20_03605 0.80 -0.8 3,795,486 - MPMX20_03605 0.80 -0.4 3,795,488 - MPMX20_03605 0.80 -2.3 3,795,630 + +0.7 3,795,652 + -2.1 3,795,652 + +2.1 3,795,666 - +0.7 3,795,666 - -0.5 3,795,854 - +1.0 3,795,881 - MPMX20_03606 0.11 -0.8 3,795,952 - MPMX20_03606 0.15 -0.5 3,795,990 - MPMX20_03606 0.18 -0.7 3,796,005 - MPMX20_03606 0.19 -0.1 3,796,043 + MPMX20_03606 0.21 +1.1 3,796,061 - MPMX20_03606 0.22 -0.6 3,796,078 + MPMX20_03606 0.23 -0.6 3,796,134 - MPMX20_03606 0.26 +1.5 3,796,145 + MPMX20_03606 0.27 -0.1 3,796,145 + MPMX20_03606 0.27 -1.4 3,796,145 + MPMX20_03606 0.27 +0.9 3,796,145 + MPMX20_03606 0.27 +0.1 3,796,153 - MPMX20_03606 0.27 -0.1 3,796,153 - MPMX20_03606 0.27 -1.0 3,796,153 - MPMX20_03606 0.27 -0.3 3,796,153 - MPMX20_03606 0.27 -1.2 3,796,153 - MPMX20_03606 0.27 +0.6 3,796,153 - MPMX20_03606 0.27 -1.1 3,796,153 - MPMX20_03606 0.27 +2.7 3,796,153 - MPMX20_03606 0.27 -1.7 3,796,153 - MPMX20_03606 0.27 -0.8 3,796,166 - MPMX20_03606 0.28 +0.2 3,796,218 + MPMX20_03606 0.31 -0.4 3,796,223 + MPMX20_03606 0.31 -1.5 3,796,279 - MPMX20_03606 0.35 +0.1 3,796,295 - MPMX20_03606 0.35 -0.3 3,796,324 + MPMX20_03606 0.37 -0.6 3,796,334 - MPMX20_03606 0.38 -3.2 3,796,413 + MPMX20_03606 0.42 -1.1 3,796,413 + MPMX20_03606 0.42 -1.0 3,796,413 + MPMX20_03606 0.42 +1.1 3,796,413 + MPMX20_03606 0.42 -1.7 3,796,413 + MPMX20_03606 0.42 -0.2 3,796,413 + MPMX20_03606 0.42 +0.0 3,796,533 - MPMX20_03606 0.49 -0.3 3,796,593 - MPMX20_03606 0.53 -0.5
Or see this region's nucleotide sequence