Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03591 and MPMX20_03592 overlap by 8 nucleotides MPMX20_03592 and MPMX20_03593 overlap by 4 nucleotides MPMX20_03593 and MPMX20_03594 are separated by 187 nucleotides
MPMX20_03591: MPMX20_03591 - Glucitol operon repressor, at 3,779,166 to 3,779,939
_03591
MPMX20_03592: MPMX20_03592 - Arabinose 5-phosphate isomerase GutQ, at 3,779,932 to 3,780,897
_03592
MPMX20_03593: MPMX20_03593 - Anaerobic nitric oxide reductase transcription regulator NorR, at 3,780,894 to 3,782,408
_03593
MPMX20_03594: MPMX20_03594 - Anaerobic nitric oxide reductase flavorubredoxin, at 3,782,596 to 3,784,035
_03594
Position (kb)
3780
3781
3782
3783 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3779.956 kb on + strand at 3779.968 kb on - strand at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.049 kb on - strand, within MPMX20_03592 at 3780.049 kb on - strand, within MPMX20_03592 at 3780.333 kb on - strand, within MPMX20_03592 at 3780.399 kb on - strand, within MPMX20_03592 at 3780.514 kb on - strand, within MPMX20_03592 at 3780.545 kb on - strand, within MPMX20_03592 at 3780.571 kb on + strand, within MPMX20_03592 at 3780.572 kb on - strand, within MPMX20_03592 at 3780.572 kb on - strand, within MPMX20_03592 at 3780.601 kb on + strand, within MPMX20_03592 at 3780.654 kb on + strand, within MPMX20_03592 at 3780.662 kb on - strand, within MPMX20_03592 at 3780.662 kb on - strand, within MPMX20_03592 at 3780.674 kb on + strand, within MPMX20_03592 at 3780.725 kb on - strand, within MPMX20_03592 at 3780.784 kb on + strand, within MPMX20_03592 at 3780.790 kb on - strand, within MPMX20_03592 at 3780.793 kb on - strand, within MPMX20_03592 at 3780.864 kb on + strand at 3780.940 kb on - strand at 3780.949 kb on - strand at 3780.968 kb on + strand at 3780.968 kb on + strand at 3780.978 kb on - strand at 3781.047 kb on + strand, within MPMX20_03593 at 3781.047 kb on + strand, within MPMX20_03593 at 3781.144 kb on + strand, within MPMX20_03593 at 3781.163 kb on - strand, within MPMX20_03593 at 3781.253 kb on - strand, within MPMX20_03593 at 3781.374 kb on + strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.418 kb on + strand, within MPMX20_03593 at 3781.418 kb on + strand, within MPMX20_03593 at 3781.418 kb on + strand, within MPMX20_03593 at 3781.423 kb on + strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.462 kb on - strand, within MPMX20_03593 at 3781.492 kb on - strand, within MPMX20_03593 at 3781.496 kb on + strand, within MPMX20_03593 at 3781.512 kb on - strand, within MPMX20_03593 at 3781.624 kb on + strand, within MPMX20_03593 at 3781.632 kb on - strand, within MPMX20_03593 at 3781.632 kb on - strand, within MPMX20_03593 at 3781.660 kb on + strand, within MPMX20_03593 at 3781.668 kb on - strand, within MPMX20_03593 at 3781.683 kb on - strand, within MPMX20_03593 at 3781.686 kb on - strand, within MPMX20_03593 at 3781.692 kb on - strand, within MPMX20_03593 at 3781.742 kb on + strand, within MPMX20_03593 at 3781.742 kb on + strand, within MPMX20_03593 at 3781.752 kb on + strand, within MPMX20_03593 at 3781.868 kb on + strand, within MPMX20_03593 at 3781.935 kb on + strand, within MPMX20_03593 at 3781.938 kb on - strand, within MPMX20_03593 at 3781.996 kb on + strand, within MPMX20_03593 at 3782.081 kb on - strand, within MPMX20_03593 at 3782.091 kb on + strand, within MPMX20_03593 at 3782.099 kb on - strand, within MPMX20_03593 at 3782.153 kb on + strand, within MPMX20_03593 at 3782.156 kb on - strand, within MPMX20_03593 at 3782.203 kb on + strand, within MPMX20_03593 at 3782.228 kb on + strand, within MPMX20_03593 at 3782.236 kb on - strand, within MPMX20_03593 at 3782.267 kb on - strand at 3782.274 kb on + strand at 3782.277 kb on - strand at 3782.282 kb on - strand at 3782.301 kb on - strand at 3782.427 kb on - strand at 3782.427 kb on - strand at 3782.558 kb on - strand at 3782.605 kb on - strand at 3782.605 kb on - strand at 3782.650 kb on - strand at 3782.650 kb on - strand at 3782.650 kb on - strand at 3782.650 kb on - strand at 3782.650 kb on - strand at 3782.650 kb on - strand at 3782.657 kb on + strand at 3782.683 kb on - strand at 3782.822 kb on + strand, within MPMX20_03594 at 3782.900 kb on - strand, within MPMX20_03594 at 3782.938 kb on - strand, within MPMX20_03594 at 3782.985 kb on + strand, within MPMX20_03594 at 3782.994 kb on - strand, within MPMX20_03594 at 3782.994 kb on - strand, within MPMX20_03594 at 3783.014 kb on - strand, within MPMX20_03594 at 3783.038 kb on + strand, within MPMX20_03594 at 3783.046 kb on - strand, within MPMX20_03594 at 3783.063 kb on - strand, within MPMX20_03594 at 3783.068 kb on + strand, within MPMX20_03594 at 3783.076 kb on - strand, within MPMX20_03594 at 3783.081 kb on + strand, within MPMX20_03594 at 3783.103 kb on - strand, within MPMX20_03594 at 3783.105 kb on + strand, within MPMX20_03594 at 3783.105 kb on + strand, within MPMX20_03594 at 3783.126 kb on + strand, within MPMX20_03594 at 3783.139 kb on - strand, within MPMX20_03594 at 3783.149 kb on - strand, within MPMX20_03594 at 3783.149 kb on - strand, within MPMX20_03594 at 3783.154 kb on - strand, within MPMX20_03594 at 3783.171 kb on - strand, within MPMX20_03594 at 3783.196 kb on + strand, within MPMX20_03594 at 3783.239 kb on + strand, within MPMX20_03594 at 3783.239 kb on + strand, within MPMX20_03594 at 3783.239 kb on + strand, within MPMX20_03594 at 3783.239 kb on + strand, within MPMX20_03594 at 3783.247 kb on - strand, within MPMX20_03594 at 3783.247 kb on - strand, within MPMX20_03594 at 3783.296 kb on + strand, within MPMX20_03594 at 3783.407 kb on + strand, within MPMX20_03594
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,779,956 + +2.7 3,779,968 - -1.6 3,780,041 + MPMX20_03592 0.11 +0.2 3,780,041 + MPMX20_03592 0.11 -0.9 3,780,041 + MPMX20_03592 0.11 +1.7 3,780,041 + MPMX20_03592 0.11 -0.2 3,780,041 + MPMX20_03592 0.11 -2.1 3,780,049 - MPMX20_03592 0.12 +1.1 3,780,049 - MPMX20_03592 0.12 -1.4 3,780,333 - MPMX20_03592 0.42 +0.1 3,780,399 - MPMX20_03592 0.48 -1.5 3,780,514 - MPMX20_03592 0.60 -1.2 3,780,545 - MPMX20_03592 0.63 -1.2 3,780,571 + MPMX20_03592 0.66 +0.0 3,780,572 - MPMX20_03592 0.66 -2.0 3,780,572 - MPMX20_03592 0.66 -0.9 3,780,601 + MPMX20_03592 0.69 -0.9 3,780,654 + MPMX20_03592 0.75 -1.3 3,780,662 - MPMX20_03592 0.76 +1.7 3,780,662 - MPMX20_03592 0.76 -0.1 3,780,674 + MPMX20_03592 0.77 -1.5 3,780,725 - MPMX20_03592 0.82 -0.9 3,780,784 + MPMX20_03592 0.88 -0.1 3,780,790 - MPMX20_03592 0.89 -0.9 3,780,793 - MPMX20_03592 0.89 +1.7 3,780,864 + -0.3 3,780,940 - +0.4 3,780,949 - -0.3 3,780,968 + -1.1 3,780,968 + +1.6 3,780,978 - +1.1 3,781,047 + MPMX20_03593 0.10 -2.2 3,781,047 + MPMX20_03593 0.10 -0.4 3,781,144 + MPMX20_03593 0.17 -1.4 3,781,163 - MPMX20_03593 0.18 -1.2 3,781,253 - MPMX20_03593 0.24 -0.4 3,781,374 + MPMX20_03593 0.32 -2.2 3,781,382 - MPMX20_03593 0.32 -1.6 3,781,382 - MPMX20_03593 0.32 +0.7 3,781,382 - MPMX20_03593 0.32 -0.9 3,781,382 - MPMX20_03593 0.32 -1.7 3,781,418 + MPMX20_03593 0.35 +0.8 3,781,418 + MPMX20_03593 0.35 +1.7 3,781,418 + MPMX20_03593 0.35 -0.4 3,781,423 + MPMX20_03593 0.35 +0.4 3,781,426 - MPMX20_03593 0.35 -1.2 3,781,426 - MPMX20_03593 0.35 -0.6 3,781,426 - MPMX20_03593 0.35 +3.7 3,781,426 - MPMX20_03593 0.35 -0.1 3,781,426 - MPMX20_03593 0.35 -2.3 3,781,462 - MPMX20_03593 0.37 -0.1 3,781,492 - MPMX20_03593 0.39 -0.1 3,781,496 + MPMX20_03593 0.40 -0.4 3,781,512 - MPMX20_03593 0.41 +0.7 3,781,624 + MPMX20_03593 0.48 +0.1 3,781,632 - MPMX20_03593 0.49 -1.4 3,781,632 - MPMX20_03593 0.49 -0.6 3,781,660 + MPMX20_03593 0.51 +2.7 3,781,668 - MPMX20_03593 0.51 -0.6 3,781,683 - MPMX20_03593 0.52 -0.7 3,781,686 - MPMX20_03593 0.52 -0.1 3,781,692 - MPMX20_03593 0.53 -0.9 3,781,742 + MPMX20_03593 0.56 +0.0 3,781,742 + MPMX20_03593 0.56 -2.0 3,781,752 + MPMX20_03593 0.57 -0.1 3,781,868 + MPMX20_03593 0.64 +0.7 3,781,935 + MPMX20_03593 0.69 -0.1 3,781,938 - MPMX20_03593 0.69 -0.3 3,781,996 + MPMX20_03593 0.73 +0.4 3,782,081 - MPMX20_03593 0.78 -1.1 3,782,091 + MPMX20_03593 0.79 -0.3 3,782,099 - MPMX20_03593 0.80 -0.2 3,782,153 + MPMX20_03593 0.83 -0.8 3,782,156 - MPMX20_03593 0.83 -0.4 3,782,203 + MPMX20_03593 0.86 -1.9 3,782,228 + MPMX20_03593 0.88 -1.4 3,782,236 - MPMX20_03593 0.89 +0.2 3,782,267 - -1.0 3,782,274 + -0.9 3,782,277 - -1.0 3,782,282 - -0.7 3,782,301 - +0.4 3,782,427 - +0.5 3,782,427 - +0.1 3,782,558 - -1.1 3,782,605 - +1.7 3,782,605 - -0.8 3,782,650 - -0.7 3,782,650 - -0.1 3,782,650 - -0.0 3,782,650 - -1.8 3,782,650 - -1.2 3,782,650 - -0.1 3,782,657 + +1.2 3,782,683 - -0.3 3,782,822 + MPMX20_03594 0.16 -0.6 3,782,900 - MPMX20_03594 0.21 +2.7 3,782,938 - MPMX20_03594 0.24 +0.5 3,782,985 + MPMX20_03594 0.27 -1.5 3,782,994 - MPMX20_03594 0.28 +1.2 3,782,994 - MPMX20_03594 0.28 -0.3 3,783,014 - MPMX20_03594 0.29 -3.0 3,783,038 + MPMX20_03594 0.31 -0.1 3,783,046 - MPMX20_03594 0.31 -0.9 3,783,063 - MPMX20_03594 0.32 +0.2 3,783,068 + MPMX20_03594 0.33 +0.1 3,783,076 - MPMX20_03594 0.33 -0.9 3,783,081 + MPMX20_03594 0.34 +0.4 3,783,103 - MPMX20_03594 0.35 +0.2 3,783,105 + MPMX20_03594 0.35 +0.7 3,783,105 + MPMX20_03594 0.35 -1.6 3,783,126 + MPMX20_03594 0.37 +0.0 3,783,139 - MPMX20_03594 0.38 +1.2 3,783,149 - MPMX20_03594 0.38 -0.6 3,783,149 - MPMX20_03594 0.38 +1.2 3,783,154 - MPMX20_03594 0.39 -0.6 3,783,171 - MPMX20_03594 0.40 -1.1 3,783,196 + MPMX20_03594 0.42 +1.1 3,783,239 + MPMX20_03594 0.45 -1.7 3,783,239 + MPMX20_03594 0.45 -1.4 3,783,239 + MPMX20_03594 0.45 -0.1 3,783,239 + MPMX20_03594 0.45 +0.6 3,783,247 - MPMX20_03594 0.45 -0.6 3,783,247 - MPMX20_03594 0.45 -1.3 3,783,296 + MPMX20_03594 0.49 +0.2 3,783,407 + MPMX20_03594 0.56 -0.7
Or see this region's nucleotide sequence