Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03590 and MPMX20_03591 are separated by 63 nucleotides MPMX20_03591 and MPMX20_03592 overlap by 8 nucleotides MPMX20_03592 and MPMX20_03593 overlap by 4 nucleotides
MPMX20_03590: MPMX20_03590 - hypothetical protein, at 3,778,743 to 3,779,102
_03590
MPMX20_03591: MPMX20_03591 - Glucitol operon repressor, at 3,779,166 to 3,779,939
_03591
MPMX20_03592: MPMX20_03592 - Arabinose 5-phosphate isomerase GutQ, at 3,779,932 to 3,780,897
_03592
MPMX20_03593: MPMX20_03593 - Anaerobic nitric oxide reductase transcription regulator NorR, at 3,780,894 to 3,782,408
_03593
Position (kb)
3779
3780
3781 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3778.968 kb on - strand, within MPMX20_03590 at 3779.057 kb on - strand, within MPMX20_03590 at 3779.067 kb on - strand at 3779.265 kb on - strand, within MPMX20_03591 at 3779.329 kb on + strand, within MPMX20_03591 at 3779.337 kb on - strand, within MPMX20_03591 at 3779.381 kb on + strand, within MPMX20_03591 at 3779.389 kb on - strand, within MPMX20_03591 at 3779.389 kb on - strand, within MPMX20_03591 at 3779.446 kb on + strand, within MPMX20_03591 at 3779.470 kb on - strand, within MPMX20_03591 at 3779.470 kb on - strand, within MPMX20_03591 at 3779.558 kb on + strand, within MPMX20_03591 at 3779.558 kb on - strand, within MPMX20_03591 at 3779.670 kb on + strand, within MPMX20_03591 at 3779.678 kb on - strand, within MPMX20_03591 at 3779.687 kb on - strand, within MPMX20_03591 at 3779.689 kb on + strand, within MPMX20_03591 at 3779.735 kb on - strand, within MPMX20_03591 at 3779.750 kb on + strand, within MPMX20_03591 at 3779.758 kb on - strand, within MPMX20_03591 at 3779.758 kb on - strand, within MPMX20_03591 at 3779.820 kb on + strand, within MPMX20_03591 at 3779.854 kb on - strand, within MPMX20_03591 at 3779.854 kb on - strand, within MPMX20_03591 at 3779.854 kb on - strand, within MPMX20_03591 at 3779.870 kb on - strand at 3779.968 kb on - strand at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.041 kb on + strand, within MPMX20_03592 at 3780.049 kb on - strand, within MPMX20_03592 at 3780.049 kb on - strand, within MPMX20_03592 at 3780.333 kb on - strand, within MPMX20_03592 at 3780.399 kb on - strand, within MPMX20_03592 at 3780.514 kb on - strand, within MPMX20_03592 at 3780.545 kb on - strand, within MPMX20_03592 at 3780.571 kb on + strand, within MPMX20_03592 at 3780.572 kb on - strand, within MPMX20_03592 at 3780.572 kb on - strand, within MPMX20_03592 at 3780.601 kb on + strand, within MPMX20_03592 at 3780.654 kb on + strand, within MPMX20_03592 at 3780.662 kb on - strand, within MPMX20_03592 at 3780.662 kb on - strand, within MPMX20_03592 at 3780.674 kb on + strand, within MPMX20_03592 at 3780.725 kb on - strand, within MPMX20_03592 at 3780.784 kb on + strand, within MPMX20_03592 at 3780.790 kb on - strand, within MPMX20_03592 at 3780.793 kb on - strand, within MPMX20_03592 at 3780.864 kb on + strand at 3780.940 kb on - strand at 3780.949 kb on - strand at 3780.968 kb on + strand at 3780.968 kb on + strand at 3780.978 kb on - strand at 3781.047 kb on + strand, within MPMX20_03593 at 3781.047 kb on + strand, within MPMX20_03593 at 3781.144 kb on + strand, within MPMX20_03593 at 3781.163 kb on - strand, within MPMX20_03593 at 3781.253 kb on - strand, within MPMX20_03593 at 3781.374 kb on + strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.382 kb on - strand, within MPMX20_03593 at 3781.418 kb on + strand, within MPMX20_03593 at 3781.418 kb on + strand, within MPMX20_03593 at 3781.418 kb on + strand, within MPMX20_03593 at 3781.423 kb on + strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.426 kb on - strand, within MPMX20_03593 at 3781.462 kb on - strand, within MPMX20_03593 at 3781.492 kb on - strand, within MPMX20_03593 at 3781.496 kb on + strand, within MPMX20_03593 at 3781.512 kb on - strand, within MPMX20_03593 at 3781.624 kb on + strand, within MPMX20_03593 at 3781.632 kb on - strand, within MPMX20_03593 at 3781.632 kb on - strand, within MPMX20_03593 at 3781.660 kb on + strand, within MPMX20_03593 at 3781.668 kb on - strand, within MPMX20_03593 at 3781.683 kb on - strand, within MPMX20_03593 at 3781.686 kb on - strand, within MPMX20_03593 at 3781.692 kb on - strand, within MPMX20_03593 at 3781.742 kb on + strand, within MPMX20_03593 at 3781.742 kb on + strand, within MPMX20_03593 at 3781.752 kb on + strand, within MPMX20_03593 at 3781.868 kb on + strand, within MPMX20_03593
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,778,968 - MPMX20_03590 0.62 -0.6 3,779,057 - MPMX20_03590 0.87 -1.4 3,779,067 - +0.1 3,779,265 - MPMX20_03591 0.13 +1.3 3,779,329 + MPMX20_03591 0.21 +0.1 3,779,337 - MPMX20_03591 0.22 +2.7 3,779,381 + MPMX20_03591 0.28 -0.2 3,779,389 - MPMX20_03591 0.29 +1.4 3,779,389 - MPMX20_03591 0.29 +0.6 3,779,446 + MPMX20_03591 0.36 +0.9 3,779,470 - MPMX20_03591 0.39 -0.1 3,779,470 - MPMX20_03591 0.39 +1.1 3,779,558 + MPMX20_03591 0.51 +2.2 3,779,558 - MPMX20_03591 0.51 +1.1 3,779,670 + MPMX20_03591 0.65 +0.7 3,779,678 - MPMX20_03591 0.66 -0.0 3,779,687 - MPMX20_03591 0.67 +3.7 3,779,689 + MPMX20_03591 0.68 +0.4 3,779,735 - MPMX20_03591 0.74 -0.7 3,779,750 + MPMX20_03591 0.75 +0.5 3,779,758 - MPMX20_03591 0.76 +1.8 3,779,758 - MPMX20_03591 0.76 +0.5 3,779,820 + MPMX20_03591 0.84 +0.2 3,779,854 - MPMX20_03591 0.89 -0.7 3,779,854 - MPMX20_03591 0.89 +0.4 3,779,854 - MPMX20_03591 0.89 -1.5 3,779,870 - -0.7 3,779,968 - -1.6 3,780,041 + MPMX20_03592 0.11 +0.2 3,780,041 + MPMX20_03592 0.11 -0.9 3,780,041 + MPMX20_03592 0.11 -0.2 3,780,041 + MPMX20_03592 0.11 -2.1 3,780,049 - MPMX20_03592 0.12 +1.1 3,780,049 - MPMX20_03592 0.12 -1.4 3,780,333 - MPMX20_03592 0.42 +0.1 3,780,399 - MPMX20_03592 0.48 -1.5 3,780,514 - MPMX20_03592 0.60 -1.2 3,780,545 - MPMX20_03592 0.63 -1.2 3,780,571 + MPMX20_03592 0.66 +0.0 3,780,572 - MPMX20_03592 0.66 -2.0 3,780,572 - MPMX20_03592 0.66 -0.9 3,780,601 + MPMX20_03592 0.69 -0.9 3,780,654 + MPMX20_03592 0.75 -1.3 3,780,662 - MPMX20_03592 0.76 +1.7 3,780,662 - MPMX20_03592 0.76 -0.1 3,780,674 + MPMX20_03592 0.77 -1.5 3,780,725 - MPMX20_03592 0.82 -0.9 3,780,784 + MPMX20_03592 0.88 -0.1 3,780,790 - MPMX20_03592 0.89 -0.9 3,780,793 - MPMX20_03592 0.89 +1.7 3,780,864 + -0.3 3,780,940 - +0.4 3,780,949 - -0.3 3,780,968 + -1.1 3,780,968 + +1.6 3,780,978 - +1.1 3,781,047 + MPMX20_03593 0.10 -2.2 3,781,047 + MPMX20_03593 0.10 -0.4 3,781,144 + MPMX20_03593 0.17 -1.4 3,781,163 - MPMX20_03593 0.18 -1.2 3,781,253 - MPMX20_03593 0.24 -0.4 3,781,374 + MPMX20_03593 0.32 -2.2 3,781,382 - MPMX20_03593 0.32 -1.6 3,781,382 - MPMX20_03593 0.32 +0.7 3,781,382 - MPMX20_03593 0.32 -0.9 3,781,382 - MPMX20_03593 0.32 -1.7 3,781,418 + MPMX20_03593 0.35 +0.8 3,781,418 + MPMX20_03593 0.35 +1.7 3,781,418 + MPMX20_03593 0.35 -0.4 3,781,423 + MPMX20_03593 0.35 +0.4 3,781,426 - MPMX20_03593 0.35 -1.2 3,781,426 - MPMX20_03593 0.35 -0.6 3,781,426 - MPMX20_03593 0.35 +3.7 3,781,426 - MPMX20_03593 0.35 -0.1 3,781,426 - MPMX20_03593 0.35 -2.3 3,781,462 - MPMX20_03593 0.37 -0.1 3,781,492 - MPMX20_03593 0.39 -0.1 3,781,496 + MPMX20_03593 0.40 -0.4 3,781,512 - MPMX20_03593 0.41 +0.7 3,781,624 + MPMX20_03593 0.48 +0.1 3,781,632 - MPMX20_03593 0.49 -1.4 3,781,632 - MPMX20_03593 0.49 -0.6 3,781,660 + MPMX20_03593 0.51 +2.7 3,781,668 - MPMX20_03593 0.51 -0.6 3,781,683 - MPMX20_03593 0.52 -0.7 3,781,686 - MPMX20_03593 0.52 -0.1 3,781,692 - MPMX20_03593 0.53 -0.9 3,781,742 + MPMX20_03593 0.56 +0.0 3,781,742 + MPMX20_03593 0.56 -2.0 3,781,752 + MPMX20_03593 0.57 -0.1 3,781,868 + MPMX20_03593 0.64 +0.7
Or see this region's nucleotide sequence