Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03481

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03480 and MPMX20_03481 are separated by 91 nucleotidesMPMX20_03481 and MPMX20_03482 are separated by 63 nucleotides MPMX20_03480: MPMX20_03480 - Signal recognition particle protein, at 3,668,950 to 3,670,311 _03480 MPMX20_03481: MPMX20_03481 - Inner membrane protein YpjD, at 3,670,403 to 3,671,269 _03481 MPMX20_03482: MPMX20_03482 - hypothetical protein, at 3,671,333 to 3,672,574 _03482 Position (kb) 3670 3671 3672Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3670.361 kb on - strandat 3670.382 kb on + strandat 3670.384 kb on - strandat 3670.418 kb on - strandat 3670.425 kb on - strandat 3670.431 kb on + strandat 3670.431 kb on + strandat 3670.431 kb on + strandat 3670.439 kb on - strandat 3670.439 kb on - strandat 3670.439 kb on - strandat 3670.521 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.536 kb on + strand, within MPMX20_03481at 3670.539 kb on - strand, within MPMX20_03481at 3670.544 kb on - strand, within MPMX20_03481at 3670.670 kb on - strand, within MPMX20_03481at 3670.754 kb on - strand, within MPMX20_03481at 3670.771 kb on - strand, within MPMX20_03481at 3670.771 kb on - strand, within MPMX20_03481at 3670.780 kb on + strand, within MPMX20_03481at 3670.780 kb on + strand, within MPMX20_03481at 3670.793 kb on - strand, within MPMX20_03481at 3670.793 kb on - strand, within MPMX20_03481at 3670.824 kb on - strand, within MPMX20_03481at 3670.855 kb on - strand, within MPMX20_03481at 3670.865 kb on + strand, within MPMX20_03481at 3670.875 kb on - strand, within MPMX20_03481at 3670.889 kb on - strand, within MPMX20_03481at 3670.908 kb on + strand, within MPMX20_03481at 3670.908 kb on + strand, within MPMX20_03481at 3670.929 kb on - strand, within MPMX20_03481at 3670.929 kb on - strand, within MPMX20_03481at 3670.959 kb on + strand, within MPMX20_03481at 3670.984 kb on + strand, within MPMX20_03481at 3670.996 kb on + strand, within MPMX20_03481at 3671.020 kb on + strand, within MPMX20_03481at 3671.025 kb on + strand, within MPMX20_03481at 3671.028 kb on - strand, within MPMX20_03481at 3671.028 kb on - strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.040 kb on + strand, within MPMX20_03481at 3671.052 kb on + strand, within MPMX20_03481at 3671.057 kb on + strand, within MPMX20_03481at 3671.057 kb on + strand, within MPMX20_03481at 3671.058 kb on - strand, within MPMX20_03481at 3671.113 kb on + strand, within MPMX20_03481at 3671.144 kb on - strand, within MPMX20_03481at 3671.202 kb on - strandat 3671.286 kb on + strandat 3671.299 kb on + strandat 3671.304 kb on + strandat 3671.316 kb on + strandat 3671.324 kb on - strandat 3671.328 kb on + strandat 3671.336 kb on + strandat 3671.409 kb on + strandat 3671.417 kb on - strandat 3671.419 kb on + strandat 3671.427 kb on - strandat 3671.476 kb on - strand, within MPMX20_03482at 3671.476 kb on - strand, within MPMX20_03482at 3671.478 kb on + strand, within MPMX20_03482at 3671.481 kb on - strand, within MPMX20_03482at 3671.527 kb on + strand, within MPMX20_03482at 3671.537 kb on + strand, within MPMX20_03482at 3671.608 kb on - strand, within MPMX20_03482at 3671.690 kb on - strand, within MPMX20_03482at 3671.779 kb on - strand, within MPMX20_03482at 3671.782 kb on - strand, within MPMX20_03482at 3671.787 kb on - strand, within MPMX20_03482at 3671.895 kb on + strand, within MPMX20_03482at 3671.960 kb on + strand, within MPMX20_03482at 3671.977 kb on + strand, within MPMX20_03482at 3671.997 kb on + strand, within MPMX20_03482at 3672.000 kb on - strand, within MPMX20_03482at 3672.153 kb on + strand, within MPMX20_03482at 3672.153 kb on + strand, within MPMX20_03482at 3672.184 kb on + strand, within MPMX20_03482

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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3,670,361 - -0.2
3,670,382 + -0.7
3,670,384 - +0.3
3,670,418 - -0.1
3,670,425 - -1.2
3,670,431 + -2.0
3,670,431 + -0.2
3,670,431 + -0.4
3,670,439 - -1.7
3,670,439 - -1.7
3,670,439 - -1.0
3,670,521 + MPMX20_03481 0.14 -1.1
3,670,536 + MPMX20_03481 0.15 -0.4
3,670,536 + MPMX20_03481 0.15 -2.2
3,670,536 + MPMX20_03481 0.15 -0.5
3,670,539 - MPMX20_03481 0.16 -0.8
3,670,544 - MPMX20_03481 0.16 +1.8
3,670,670 - MPMX20_03481 0.31 +0.4
3,670,754 - MPMX20_03481 0.40 -2.1
3,670,771 - MPMX20_03481 0.42 +0.0
3,670,771 - MPMX20_03481 0.42 -2.2
3,670,780 + MPMX20_03481 0.43 -1.6
3,670,780 + MPMX20_03481 0.43 -0.5
3,670,793 - MPMX20_03481 0.45 -2.7
3,670,793 - MPMX20_03481 0.45 -2.6
3,670,824 - MPMX20_03481 0.49 -1.1
3,670,855 - MPMX20_03481 0.52 +1.8
3,670,865 + MPMX20_03481 0.53 -0.6
3,670,875 - MPMX20_03481 0.54 -2.0
3,670,889 - MPMX20_03481 0.56 -0.5
3,670,908 + MPMX20_03481 0.58 -2.6
3,670,908 + MPMX20_03481 0.58 -2.4
3,670,929 - MPMX20_03481 0.61 -1.9
3,670,929 - MPMX20_03481 0.61 +0.2
3,670,959 + MPMX20_03481 0.64 +0.3
3,670,984 + MPMX20_03481 0.67 -0.4
3,670,996 + MPMX20_03481 0.68 -1.8
3,671,020 + MPMX20_03481 0.71 -1.7
3,671,025 + MPMX20_03481 0.72 -2.4
3,671,028 - MPMX20_03481 0.72 +0.2
3,671,028 - MPMX20_03481 0.72 +3.2
3,671,040 + MPMX20_03481 0.73 -0.4
3,671,040 + MPMX20_03481 0.73 +0.6
3,671,040 + MPMX20_03481 0.73 -0.2
3,671,040 + MPMX20_03481 0.73 -1.1
3,671,052 + MPMX20_03481 0.75 -0.6
3,671,057 + MPMX20_03481 0.75 -1.6
3,671,057 + MPMX20_03481 0.75 -2.5
3,671,058 - MPMX20_03481 0.76 -3.5
3,671,113 + MPMX20_03481 0.82 +0.1
3,671,144 - MPMX20_03481 0.85 -2.0
3,671,202 - -0.1
3,671,286 + -1.2
3,671,299 + +3.7
3,671,304 + -1.6
3,671,316 + -0.9
3,671,324 - -1.3
3,671,328 + -0.9
3,671,336 + -0.4
3,671,409 + +0.2
3,671,417 - -0.4
3,671,419 + +0.4
3,671,427 - -2.4
3,671,476 - MPMX20_03482 0.12 -1.1
3,671,476 - MPMX20_03482 0.12 -0.5
3,671,478 + MPMX20_03482 0.12 +0.4
3,671,481 - MPMX20_03482 0.12 +0.6
3,671,527 + MPMX20_03482 0.16 +2.3
3,671,537 + MPMX20_03482 0.16 -0.5
3,671,608 - MPMX20_03482 0.22 +0.2
3,671,690 - MPMX20_03482 0.29 -1.3
3,671,779 - MPMX20_03482 0.36 -0.5
3,671,782 - MPMX20_03482 0.36 -0.7
3,671,787 - MPMX20_03482 0.37 -0.6
3,671,895 + MPMX20_03482 0.45 -1.9
3,671,960 + MPMX20_03482 0.50 -1.5
3,671,977 + MPMX20_03482 0.52 -0.7
3,671,997 + MPMX20_03482 0.53 +0.6
3,672,000 - MPMX20_03482 0.54 -0.2
3,672,153 + MPMX20_03482 0.66 -0.5
3,672,153 + MPMX20_03482 0.66 -0.6
3,672,184 + MPMX20_03482 0.69 -0.1

Or see this region's nucleotide sequence