Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03428 and MPMX20_03429 are separated by 24 nucleotides MPMX20_03429 and MPMX20_03430 are separated by 3 nucleotides MPMX20_03430 and MPMX20_03431 are separated by 11 nucleotides
MPMX20_03428: MPMX20_03428 - tRNA-specific adenosine deaminase, at 3,617,588 to 3,618,127
_03428
MPMX20_03429: MPMX20_03429 - Phosphatidylglycerophosphatase C, at 3,618,152 to 3,618,787
_03429
MPMX20_03430: MPMX20_03430 - PTS system EIIBC component, at 3,618,791 to 3,620,152
_03430
MPMX20_03431: MPMX20_03431 - N-acetylmuramic acid 6-phosphate etherase, at 3,620,164 to 3,621,057
_03431
Position (kb)
3618
3619
3620
3621 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3618.092 kb on - strand at 3618.124 kb on + strand at 3618.124 kb on + strand at 3618.126 kb on + strand at 3618.132 kb on - strand at 3618.132 kb on - strand at 3618.132 kb on - strand at 3618.132 kb on - strand at 3618.144 kb on + strand at 3618.163 kb on + strand at 3618.247 kb on - strand, within MPMX20_03429 at 3618.320 kb on + strand, within MPMX20_03429 at 3618.328 kb on - strand, within MPMX20_03429 at 3618.366 kb on + strand, within MPMX20_03429 at 3618.396 kb on + strand, within MPMX20_03429 at 3618.404 kb on - strand, within MPMX20_03429 at 3618.404 kb on - strand, within MPMX20_03429 at 3618.451 kb on - strand, within MPMX20_03429 at 3618.554 kb on - strand, within MPMX20_03429 at 3618.555 kb on - strand, within MPMX20_03429 at 3618.692 kb on + strand, within MPMX20_03429 at 3618.720 kb on + strand, within MPMX20_03429 at 3618.788 kb on + strand at 3618.791 kb on - strand at 3618.796 kb on + strand at 3618.796 kb on + strand at 3618.868 kb on - strand at 3618.872 kb on + strand at 3618.880 kb on - strand at 3618.880 kb on - strand at 3618.880 kb on - strand at 3618.959 kb on + strand, within MPMX20_03430 at 3618.967 kb on - strand, within MPMX20_03430 at 3618.972 kb on - strand, within MPMX20_03430 at 3618.988 kb on + strand, within MPMX20_03430 at 3619.077 kb on - strand, within MPMX20_03430 at 3619.085 kb on - strand, within MPMX20_03430 at 3619.142 kb on - strand, within MPMX20_03430 at 3619.144 kb on + strand, within MPMX20_03430 at 3619.144 kb on + strand, within MPMX20_03430 at 3619.263 kb on - strand, within MPMX20_03430 at 3619.320 kb on - strand, within MPMX20_03430 at 3619.339 kb on - strand, within MPMX20_03430 at 3619.415 kb on - strand, within MPMX20_03430 at 3619.428 kb on - strand, within MPMX20_03430 at 3619.441 kb on - strand, within MPMX20_03430 at 3619.443 kb on - strand, within MPMX20_03430 at 3619.515 kb on + strand, within MPMX20_03430 at 3619.515 kb on + strand, within MPMX20_03430 at 3619.523 kb on - strand, within MPMX20_03430 at 3619.535 kb on - strand, within MPMX20_03430 at 3619.544 kb on - strand, within MPMX20_03430 at 3619.552 kb on + strand, within MPMX20_03430 at 3619.620 kb on + strand, within MPMX20_03430 at 3619.620 kb on + strand, within MPMX20_03430 at 3619.620 kb on + strand, within MPMX20_03430 at 3619.628 kb on - strand, within MPMX20_03430 at 3619.629 kb on - strand, within MPMX20_03430 at 3619.765 kb on - strand, within MPMX20_03430 at 3619.765 kb on - strand, within MPMX20_03430 at 3619.765 kb on - strand, within MPMX20_03430 at 3619.967 kb on + strand, within MPMX20_03430 at 3620.043 kb on - strand at 3620.358 kb on + strand, within MPMX20_03431 at 3620.496 kb on - strand, within MPMX20_03431 at 3620.528 kb on + strand, within MPMX20_03431 at 3620.601 kb on + strand, within MPMX20_03431 at 3620.609 kb on - strand, within MPMX20_03431 at 3620.632 kb on + strand, within MPMX20_03431 at 3620.681 kb on - strand, within MPMX20_03431 at 3620.681 kb on - strand, within MPMX20_03431 at 3620.723 kb on - strand, within MPMX20_03431 at 3620.732 kb on + strand, within MPMX20_03431 at 3620.732 kb on + strand, within MPMX20_03431 at 3620.760 kb on + strand, within MPMX20_03431 at 3620.854 kb on + strand, within MPMX20_03431 at 3620.972 kb on + strand at 3620.985 kb on + strand at 3621.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,618,092 - -2.8 3,618,124 + +1.2 3,618,124 + -0.8 3,618,126 + -2.2 3,618,132 - -0.9 3,618,132 - -1.5 3,618,132 - +3.1 3,618,132 - -0.8 3,618,144 + +0.0 3,618,163 + -0.8 3,618,247 - MPMX20_03429 0.15 -0.2 3,618,320 + MPMX20_03429 0.26 -0.1 3,618,328 - MPMX20_03429 0.28 -0.2 3,618,366 + MPMX20_03429 0.34 -2.0 3,618,396 + MPMX20_03429 0.38 -0.6 3,618,404 - MPMX20_03429 0.40 -0.7 3,618,404 - MPMX20_03429 0.40 +0.9 3,618,451 - MPMX20_03429 0.47 +0.7 3,618,554 - MPMX20_03429 0.63 +0.6 3,618,555 - MPMX20_03429 0.63 +1.2 3,618,692 + MPMX20_03429 0.85 -0.8 3,618,720 + MPMX20_03429 0.89 +0.5 3,618,788 + +0.7 3,618,791 - -0.7 3,618,796 + +1.0 3,618,796 + -0.7 3,618,868 - -1.7 3,618,872 + -0.1 3,618,880 - +1.6 3,618,880 - -1.7 3,618,880 - -1.3 3,618,959 + MPMX20_03430 0.12 -2.2 3,618,967 - MPMX20_03430 0.13 -1.1 3,618,972 - MPMX20_03430 0.13 -1.6 3,618,988 + MPMX20_03430 0.14 +0.7 3,619,077 - MPMX20_03430 0.21 +0.4 3,619,085 - MPMX20_03430 0.22 +0.9 3,619,142 - MPMX20_03430 0.26 -1.0 3,619,144 + MPMX20_03430 0.26 -1.1 3,619,144 + MPMX20_03430 0.26 -0.1 3,619,263 - MPMX20_03430 0.35 -1.8 3,619,320 - MPMX20_03430 0.39 -1.2 3,619,339 - MPMX20_03430 0.40 -1.6 3,619,415 - MPMX20_03430 0.46 +0.6 3,619,428 - MPMX20_03430 0.47 -0.1 3,619,441 - MPMX20_03430 0.48 -1.0 3,619,443 - MPMX20_03430 0.48 -1.4 3,619,515 + MPMX20_03430 0.53 -0.9 3,619,515 + MPMX20_03430 0.53 -1.4 3,619,523 - MPMX20_03430 0.54 +1.4 3,619,535 - MPMX20_03430 0.55 +0.3 3,619,544 - MPMX20_03430 0.55 -0.8 3,619,552 + MPMX20_03430 0.56 -2.2 3,619,620 + MPMX20_03430 0.61 +0.3 3,619,620 + MPMX20_03430 0.61 -1.2 3,619,620 + MPMX20_03430 0.61 -1.4 3,619,628 - MPMX20_03430 0.61 -0.5 3,619,629 - MPMX20_03430 0.62 +1.5 3,619,765 - MPMX20_03430 0.72 -1.4 3,619,765 - MPMX20_03430 0.72 -0.6 3,619,765 - MPMX20_03430 0.72 -1.6 3,619,967 + MPMX20_03430 0.86 -0.3 3,620,043 - -0.9 3,620,358 + MPMX20_03431 0.22 -0.2 3,620,496 - MPMX20_03431 0.37 +1.3 3,620,528 + MPMX20_03431 0.41 +0.2 3,620,601 + MPMX20_03431 0.49 +0.4 3,620,609 - MPMX20_03431 0.50 +0.2 3,620,632 + MPMX20_03431 0.52 +0.4 3,620,681 - MPMX20_03431 0.58 +1.4 3,620,681 - MPMX20_03431 0.58 +2.7 3,620,723 - MPMX20_03431 0.63 -1.2 3,620,732 + MPMX20_03431 0.64 +2.7 3,620,732 + MPMX20_03431 0.64 -1.2 3,620,760 + MPMX20_03431 0.67 -0.4 3,620,854 + MPMX20_03431 0.77 -0.6 3,620,972 + -1.6 3,620,985 + -1.1 3,621,059 - +0.6
Or see this region's nucleotide sequence