Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03430

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03428 and MPMX20_03429 are separated by 24 nucleotidesMPMX20_03429 and MPMX20_03430 are separated by 3 nucleotidesMPMX20_03430 and MPMX20_03431 are separated by 11 nucleotides MPMX20_03428: MPMX20_03428 - tRNA-specific adenosine deaminase, at 3,617,588 to 3,618,127 _03428 MPMX20_03429: MPMX20_03429 - Phosphatidylglycerophosphatase C, at 3,618,152 to 3,618,787 _03429 MPMX20_03430: MPMX20_03430 - PTS system EIIBC component, at 3,618,791 to 3,620,152 _03430 MPMX20_03431: MPMX20_03431 - N-acetylmuramic acid 6-phosphate etherase, at 3,620,164 to 3,621,057 _03431 Position (kb) 3618 3619 3620 3621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3618.092 kb on - strandat 3618.124 kb on + strandat 3618.124 kb on + strandat 3618.126 kb on + strandat 3618.132 kb on - strandat 3618.132 kb on - strandat 3618.132 kb on - strandat 3618.132 kb on - strandat 3618.144 kb on + strandat 3618.163 kb on + strandat 3618.247 kb on - strand, within MPMX20_03429at 3618.320 kb on + strand, within MPMX20_03429at 3618.328 kb on - strand, within MPMX20_03429at 3618.366 kb on + strand, within MPMX20_03429at 3618.396 kb on + strand, within MPMX20_03429at 3618.404 kb on - strand, within MPMX20_03429at 3618.404 kb on - strand, within MPMX20_03429at 3618.451 kb on - strand, within MPMX20_03429at 3618.554 kb on - strand, within MPMX20_03429at 3618.555 kb on - strand, within MPMX20_03429at 3618.692 kb on + strand, within MPMX20_03429at 3618.720 kb on + strand, within MPMX20_03429at 3618.788 kb on + strandat 3618.791 kb on - strandat 3618.796 kb on + strandat 3618.796 kb on + strandat 3618.868 kb on - strandat 3618.872 kb on + strandat 3618.880 kb on - strandat 3618.880 kb on - strandat 3618.880 kb on - strandat 3618.959 kb on + strand, within MPMX20_03430at 3618.967 kb on - strand, within MPMX20_03430at 3618.972 kb on - strand, within MPMX20_03430at 3618.988 kb on + strand, within MPMX20_03430at 3619.077 kb on - strand, within MPMX20_03430at 3619.085 kb on - strand, within MPMX20_03430at 3619.142 kb on - strand, within MPMX20_03430at 3619.144 kb on + strand, within MPMX20_03430at 3619.144 kb on + strand, within MPMX20_03430at 3619.263 kb on - strand, within MPMX20_03430at 3619.320 kb on - strand, within MPMX20_03430at 3619.339 kb on - strand, within MPMX20_03430at 3619.415 kb on - strand, within MPMX20_03430at 3619.428 kb on - strand, within MPMX20_03430at 3619.441 kb on - strand, within MPMX20_03430at 3619.443 kb on - strand, within MPMX20_03430at 3619.515 kb on + strand, within MPMX20_03430at 3619.515 kb on + strand, within MPMX20_03430at 3619.523 kb on - strand, within MPMX20_03430at 3619.535 kb on - strand, within MPMX20_03430at 3619.544 kb on - strand, within MPMX20_03430at 3619.552 kb on + strand, within MPMX20_03430at 3619.620 kb on + strand, within MPMX20_03430at 3619.620 kb on + strand, within MPMX20_03430at 3619.620 kb on + strand, within MPMX20_03430at 3619.628 kb on - strand, within MPMX20_03430at 3619.629 kb on - strand, within MPMX20_03430at 3619.765 kb on - strand, within MPMX20_03430at 3619.765 kb on - strand, within MPMX20_03430at 3619.765 kb on - strand, within MPMX20_03430at 3619.967 kb on + strand, within MPMX20_03430at 3620.043 kb on - strandat 3620.358 kb on + strand, within MPMX20_03431at 3620.496 kb on - strand, within MPMX20_03431at 3620.528 kb on + strand, within MPMX20_03431at 3620.601 kb on + strand, within MPMX20_03431at 3620.609 kb on - strand, within MPMX20_03431at 3620.632 kb on + strand, within MPMX20_03431at 3620.681 kb on - strand, within MPMX20_03431at 3620.681 kb on - strand, within MPMX20_03431at 3620.723 kb on - strand, within MPMX20_03431at 3620.732 kb on + strand, within MPMX20_03431at 3620.732 kb on + strand, within MPMX20_03431at 3620.760 kb on + strand, within MPMX20_03431at 3620.854 kb on + strand, within MPMX20_03431at 3620.972 kb on + strandat 3620.985 kb on + strandat 3621.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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3,618,092 - -2.8
3,618,124 + +1.2
3,618,124 + -0.8
3,618,126 + -2.2
3,618,132 - -0.9
3,618,132 - -1.5
3,618,132 - +3.1
3,618,132 - -0.8
3,618,144 + +0.0
3,618,163 + -0.8
3,618,247 - MPMX20_03429 0.15 -0.2
3,618,320 + MPMX20_03429 0.26 -0.1
3,618,328 - MPMX20_03429 0.28 -0.2
3,618,366 + MPMX20_03429 0.34 -2.0
3,618,396 + MPMX20_03429 0.38 -0.6
3,618,404 - MPMX20_03429 0.40 -0.7
3,618,404 - MPMX20_03429 0.40 +0.9
3,618,451 - MPMX20_03429 0.47 +0.7
3,618,554 - MPMX20_03429 0.63 +0.6
3,618,555 - MPMX20_03429 0.63 +1.2
3,618,692 + MPMX20_03429 0.85 -0.8
3,618,720 + MPMX20_03429 0.89 +0.5
3,618,788 + +0.7
3,618,791 - -0.7
3,618,796 + +1.0
3,618,796 + -0.7
3,618,868 - -1.7
3,618,872 + -0.1
3,618,880 - +1.6
3,618,880 - -1.7
3,618,880 - -1.3
3,618,959 + MPMX20_03430 0.12 -2.2
3,618,967 - MPMX20_03430 0.13 -1.1
3,618,972 - MPMX20_03430 0.13 -1.6
3,618,988 + MPMX20_03430 0.14 +0.7
3,619,077 - MPMX20_03430 0.21 +0.4
3,619,085 - MPMX20_03430 0.22 +0.9
3,619,142 - MPMX20_03430 0.26 -1.0
3,619,144 + MPMX20_03430 0.26 -1.1
3,619,144 + MPMX20_03430 0.26 -0.1
3,619,263 - MPMX20_03430 0.35 -1.8
3,619,320 - MPMX20_03430 0.39 -1.2
3,619,339 - MPMX20_03430 0.40 -1.6
3,619,415 - MPMX20_03430 0.46 +0.6
3,619,428 - MPMX20_03430 0.47 -0.1
3,619,441 - MPMX20_03430 0.48 -1.0
3,619,443 - MPMX20_03430 0.48 -1.4
3,619,515 + MPMX20_03430 0.53 -0.9
3,619,515 + MPMX20_03430 0.53 -1.4
3,619,523 - MPMX20_03430 0.54 +1.4
3,619,535 - MPMX20_03430 0.55 +0.3
3,619,544 - MPMX20_03430 0.55 -0.8
3,619,552 + MPMX20_03430 0.56 -2.2
3,619,620 + MPMX20_03430 0.61 +0.3
3,619,620 + MPMX20_03430 0.61 -1.2
3,619,620 + MPMX20_03430 0.61 -1.4
3,619,628 - MPMX20_03430 0.61 -0.5
3,619,629 - MPMX20_03430 0.62 +1.5
3,619,765 - MPMX20_03430 0.72 -1.4
3,619,765 - MPMX20_03430 0.72 -0.6
3,619,765 - MPMX20_03430 0.72 -1.6
3,619,967 + MPMX20_03430 0.86 -0.3
3,620,043 - -0.9
3,620,358 + MPMX20_03431 0.22 -0.2
3,620,496 - MPMX20_03431 0.37 +1.3
3,620,528 + MPMX20_03431 0.41 +0.2
3,620,601 + MPMX20_03431 0.49 +0.4
3,620,609 - MPMX20_03431 0.50 +0.2
3,620,632 + MPMX20_03431 0.52 +0.4
3,620,681 - MPMX20_03431 0.58 +1.4
3,620,681 - MPMX20_03431 0.58 +2.7
3,620,723 - MPMX20_03431 0.63 -1.2
3,620,732 + MPMX20_03431 0.64 +2.7
3,620,732 + MPMX20_03431 0.64 -1.2
3,620,760 + MPMX20_03431 0.67 -0.4
3,620,854 + MPMX20_03431 0.77 -0.6
3,620,972 + -1.6
3,620,985 + -1.1
3,621,059 - +0.6

Or see this region's nucleotide sequence