Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02921

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02920 and MPMX20_02921 are separated by 7 nucleotidesMPMX20_02921 and MPMX20_02922 are separated by 18 nucleotidesMPMX20_02922 and MPMX20_02923 overlap by 4 nucleotides MPMX20_02920: MPMX20_02920 - hypothetical protein, at 3,056,010 to 3,056,981 _02920 MPMX20_02921: MPMX20_02921 - hypothetical protein, at 3,056,989 to 3,057,273 _02921 MPMX20_02922: MPMX20_02922 - hypothetical protein, at 3,057,292 to 3,058,137 _02922 MPMX20_02923: MPMX20_02923 - hypothetical protein, at 3,058,134 to 3,058,814 _02923 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3056.024 kb on + strandat 3056.047 kb on + strandat 3056.083 kb on + strandat 3056.083 kb on + strandat 3056.083 kb on + strandat 3056.159 kb on - strand, within MPMX20_02920at 3056.240 kb on + strand, within MPMX20_02920at 3056.303 kb on + strand, within MPMX20_02920at 3056.438 kb on + strand, within MPMX20_02920at 3056.438 kb on + strand, within MPMX20_02920at 3056.438 kb on + strand, within MPMX20_02920at 3056.438 kb on + strand, within MPMX20_02920at 3056.438 kb on + strand, within MPMX20_02920at 3056.446 kb on - strand, within MPMX20_02920at 3056.446 kb on - strand, within MPMX20_02920at 3056.446 kb on - strand, within MPMX20_02920at 3056.446 kb on - strand, within MPMX20_02920at 3056.487 kb on - strand, within MPMX20_02920at 3056.499 kb on + strand, within MPMX20_02920at 3056.522 kb on + strand, within MPMX20_02920at 3056.530 kb on - strand, within MPMX20_02920at 3056.695 kb on - strand, within MPMX20_02920at 3056.860 kb on - strand, within MPMX20_02920at 3056.901 kb on + strandat 3056.901 kb on + strandat 3056.909 kb on - strandat 3056.926 kb on - strandat 3056.930 kb on + strandat 3056.993 kb on + strandat 3057.027 kb on + strand, within MPMX20_02921at 3057.027 kb on + strand, within MPMX20_02921at 3057.027 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.032 kb on + strand, within MPMX20_02921at 3057.035 kb on - strand, within MPMX20_02921at 3057.035 kb on - strand, within MPMX20_02921at 3057.040 kb on - strand, within MPMX20_02921at 3057.040 kb on - strand, within MPMX20_02921at 3057.040 kb on - strand, within MPMX20_02921at 3057.040 kb on - strand, within MPMX20_02921at 3057.040 kb on - strand, within MPMX20_02921at 3057.126 kb on + strand, within MPMX20_02921at 3057.129 kb on - strand, within MPMX20_02921at 3057.158 kb on - strand, within MPMX20_02921at 3057.161 kb on + strand, within MPMX20_02921at 3057.220 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.235 kb on + strand, within MPMX20_02921at 3057.239 kb on - strand, within MPMX20_02921at 3057.239 kb on - strand, within MPMX20_02921at 3057.243 kb on - strand, within MPMX20_02921at 3057.243 kb on - strand, within MPMX20_02921at 3057.250 kb on - strandat 3057.250 kb on - strandat 3057.257 kb on - strandat 3057.260 kb on - strandat 3057.360 kb on - strandat 3057.372 kb on - strandat 3057.374 kb on + strandat 3057.374 kb on - strandat 3057.450 kb on + strand, within MPMX20_02922at 3057.458 kb on - strand, within MPMX20_02922at 3057.458 kb on - strand, within MPMX20_02922at 3057.571 kb on - strand, within MPMX20_02922at 3057.621 kb on - strand, within MPMX20_02922at 3057.677 kb on - strand, within MPMX20_02922at 3057.681 kb on + strand, within MPMX20_02922at 3057.747 kb on - strand, within MPMX20_02922at 3057.834 kb on + strand, within MPMX20_02922at 3057.842 kb on - strand, within MPMX20_02922at 3057.845 kb on + strand, within MPMX20_02922at 3057.853 kb on - strand, within MPMX20_02922at 3057.858 kb on + strand, within MPMX20_02922at 3057.889 kb on - strand, within MPMX20_02922at 3057.921 kb on - strand, within MPMX20_02922at 3057.970 kb on - strand, within MPMX20_02922at 3058.009 kb on + strand, within MPMX20_02922at 3058.035 kb on - strand, within MPMX20_02922at 3058.064 kb on + strandat 3058.064 kb on + strandat 3058.064 kb on + strandat 3058.064 kb on + strandat 3058.072 kb on - strandat 3058.072 kb on - strandat 3058.072 kb on - strandat 3058.072 kb on - strandat 3058.096 kb on + strandat 3058.105 kb on - strandat 3058.144 kb on + strandat 3058.144 kb on + strandat 3058.149 kb on + strandat 3058.152 kb on - strandat 3058.195 kb on - strandat 3058.234 kb on + strand, within MPMX20_02923at 3058.234 kb on + strand, within MPMX20_02923at 3058.234 kb on + strand, within MPMX20_02923at 3058.234 kb on + strand, within MPMX20_02923at 3058.242 kb on - strand, within MPMX20_02923at 3058.272 kb on + strand, within MPMX20_02923

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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3,056,024 + -2.3
3,056,047 + -2.9
3,056,083 + -2.6
3,056,083 + -2.5
3,056,083 + -0.5
3,056,159 - MPMX20_02920 0.15 -1.2
3,056,240 + MPMX20_02920 0.24 -1.7
3,056,303 + MPMX20_02920 0.30 -2.0
3,056,438 + MPMX20_02920 0.44 -2.5
3,056,438 + MPMX20_02920 0.44 -2.4
3,056,438 + MPMX20_02920 0.44 -3.1
3,056,438 + MPMX20_02920 0.44 -1.3
3,056,438 + MPMX20_02920 0.44 -1.1
3,056,446 - MPMX20_02920 0.45 -2.4
3,056,446 - MPMX20_02920 0.45 +1.4
3,056,446 - MPMX20_02920 0.45 +0.8
3,056,446 - MPMX20_02920 0.45 -1.1
3,056,487 - MPMX20_02920 0.49 -1.0
3,056,499 + MPMX20_02920 0.50 -0.3
3,056,522 + MPMX20_02920 0.53 -2.7
3,056,530 - MPMX20_02920 0.53 -1.5
3,056,695 - MPMX20_02920 0.70 -1.0
3,056,860 - MPMX20_02920 0.87 -1.2
3,056,901 + -0.7
3,056,901 + -2.0
3,056,909 - -0.9
3,056,926 - -2.0
3,056,930 + -1.4
3,056,993 + -0.3
3,057,027 + MPMX20_02921 0.13 -0.5
3,057,027 + MPMX20_02921 0.13 -1.2
3,057,027 + MPMX20_02921 0.13 -1.5
3,057,032 + MPMX20_02921 0.15 -0.4
3,057,032 + MPMX20_02921 0.15 -0.7
3,057,032 + MPMX20_02921 0.15 -1.5
3,057,032 + MPMX20_02921 0.15 -1.0
3,057,032 + MPMX20_02921 0.15 +1.5
3,057,032 + MPMX20_02921 0.15 -2.9
3,057,032 + MPMX20_02921 0.15 +1.3
3,057,032 + MPMX20_02921 0.15 -1.6
3,057,032 + MPMX20_02921 0.15 -2.1
3,057,035 - MPMX20_02921 0.16 -0.9
3,057,035 - MPMX20_02921 0.16 -0.6
3,057,040 - MPMX20_02921 0.18 -2.1
3,057,040 - MPMX20_02921 0.18 -1.3
3,057,040 - MPMX20_02921 0.18 -1.1
3,057,040 - MPMX20_02921 0.18 -0.7
3,057,040 - MPMX20_02921 0.18 -1.1
3,057,126 + MPMX20_02921 0.48 -1.3
3,057,129 - MPMX20_02921 0.49 -0.4
3,057,158 - MPMX20_02921 0.59 -1.6
3,057,161 + MPMX20_02921 0.60 -0.5
3,057,220 + MPMX20_02921 0.81 -0.8
3,057,235 + MPMX20_02921 0.86 -0.5
3,057,235 + MPMX20_02921 0.86 -1.1
3,057,235 + MPMX20_02921 0.86 -0.8
3,057,235 + MPMX20_02921 0.86 -0.7
3,057,239 - MPMX20_02921 0.88 -2.1
3,057,239 - MPMX20_02921 0.88 +0.4
3,057,243 - MPMX20_02921 0.89 -0.1
3,057,243 - MPMX20_02921 0.89 -0.0
3,057,250 - -0.2
3,057,250 - -1.6
3,057,257 - -0.2
3,057,260 - -1.4
3,057,360 - -1.8
3,057,372 - -0.7
3,057,374 + -1.9
3,057,374 - -1.2
3,057,450 + MPMX20_02922 0.19 -1.6
3,057,458 - MPMX20_02922 0.20 -3.1
3,057,458 - MPMX20_02922 0.20 -0.6
3,057,571 - MPMX20_02922 0.33 -0.7
3,057,621 - MPMX20_02922 0.39 -0.9
3,057,677 - MPMX20_02922 0.46 -1.0
3,057,681 + MPMX20_02922 0.46 -0.5
3,057,747 - MPMX20_02922 0.54 -0.5
3,057,834 + MPMX20_02922 0.64 -1.4
3,057,842 - MPMX20_02922 0.65 -0.9
3,057,845 + MPMX20_02922 0.65 +0.3
3,057,853 - MPMX20_02922 0.66 -0.5
3,057,858 + MPMX20_02922 0.67 -0.5
3,057,889 - MPMX20_02922 0.71 -1.3
3,057,921 - MPMX20_02922 0.74 +0.6
3,057,970 - MPMX20_02922 0.80 -0.7
3,058,009 + MPMX20_02922 0.85 -0.9
3,058,035 - MPMX20_02922 0.88 -1.6
3,058,064 + +2.5
3,058,064 + -1.4
3,058,064 + -1.7
3,058,064 + -0.4
3,058,072 - -2.2
3,058,072 - -1.3
3,058,072 - -0.6
3,058,072 - +2.6
3,058,096 + +0.1
3,058,105 - -0.9
3,058,144 + -0.1
3,058,144 + -2.5
3,058,149 + -1.8
3,058,152 - -1.4
3,058,195 - -1.3
3,058,234 + MPMX20_02923 0.15 -1.2
3,058,234 + MPMX20_02923 0.15 -1.9
3,058,234 + MPMX20_02923 0.15 -0.9
3,058,234 + MPMX20_02923 0.15 -0.7
3,058,242 - MPMX20_02923 0.16 -0.8
3,058,272 + MPMX20_02923 0.20 -0.9

Or see this region's nucleotide sequence