Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02920 and MPMX20_02921 are separated by 7 nucleotides MPMX20_02921 and MPMX20_02922 are separated by 18 nucleotides MPMX20_02922 and MPMX20_02923 overlap by 4 nucleotides
MPMX20_02920: MPMX20_02920 - hypothetical protein, at 3,056,010 to 3,056,981
_02920
MPMX20_02921: MPMX20_02921 - hypothetical protein, at 3,056,989 to 3,057,273
_02921
MPMX20_02922: MPMX20_02922 - hypothetical protein, at 3,057,292 to 3,058,137
_02922
MPMX20_02923: MPMX20_02923 - hypothetical protein, at 3,058,134 to 3,058,814
_02923
Position (kb)
3056
3057
3058 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3056.024 kb on + strand at 3056.047 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.159 kb on - strand, within MPMX20_02920 at 3056.240 kb on + strand, within MPMX20_02920 at 3056.303 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.487 kb on - strand, within MPMX20_02920 at 3056.499 kb on + strand, within MPMX20_02920 at 3056.522 kb on + strand, within MPMX20_02920 at 3056.530 kb on - strand, within MPMX20_02920 at 3056.695 kb on - strand, within MPMX20_02920 at 3056.860 kb on - strand, within MPMX20_02920 at 3056.901 kb on + strand at 3056.901 kb on + strand at 3056.909 kb on - strand at 3056.926 kb on - strand at 3056.930 kb on + strand at 3056.993 kb on + strand at 3057.027 kb on + strand, within MPMX20_02921 at 3057.027 kb on + strand, within MPMX20_02921 at 3057.027 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.035 kb on - strand, within MPMX20_02921 at 3057.035 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.126 kb on + strand, within MPMX20_02921 at 3057.129 kb on - strand, within MPMX20_02921 at 3057.158 kb on - strand, within MPMX20_02921 at 3057.161 kb on + strand, within MPMX20_02921 at 3057.220 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.239 kb on - strand, within MPMX20_02921 at 3057.239 kb on - strand, within MPMX20_02921 at 3057.243 kb on - strand, within MPMX20_02921 at 3057.243 kb on - strand, within MPMX20_02921 at 3057.250 kb on - strand at 3057.250 kb on - strand at 3057.257 kb on - strand at 3057.260 kb on - strand at 3057.360 kb on - strand at 3057.372 kb on - strand at 3057.374 kb on + strand at 3057.374 kb on - strand at 3057.450 kb on + strand, within MPMX20_02922 at 3057.458 kb on - strand, within MPMX20_02922 at 3057.458 kb on - strand, within MPMX20_02922 at 3057.571 kb on - strand, within MPMX20_02922 at 3057.621 kb on - strand, within MPMX20_02922 at 3057.677 kb on - strand, within MPMX20_02922 at 3057.681 kb on + strand, within MPMX20_02922 at 3057.747 kb on - strand, within MPMX20_02922 at 3057.834 kb on + strand, within MPMX20_02922 at 3057.842 kb on - strand, within MPMX20_02922 at 3057.845 kb on + strand, within MPMX20_02922 at 3057.853 kb on - strand, within MPMX20_02922 at 3057.858 kb on + strand, within MPMX20_02922 at 3057.889 kb on - strand, within MPMX20_02922 at 3057.921 kb on - strand, within MPMX20_02922 at 3057.970 kb on - strand, within MPMX20_02922 at 3058.009 kb on + strand, within MPMX20_02922 at 3058.035 kb on - strand, within MPMX20_02922 at 3058.064 kb on + strand at 3058.064 kb on + strand at 3058.064 kb on + strand at 3058.064 kb on + strand at 3058.072 kb on - strand at 3058.072 kb on - strand at 3058.072 kb on - strand at 3058.072 kb on - strand at 3058.096 kb on + strand at 3058.105 kb on - strand at 3058.144 kb on + strand at 3058.144 kb on + strand at 3058.149 kb on + strand at 3058.152 kb on - strand at 3058.195 kb on - strand at 3058.234 kb on + strand, within MPMX20_02923 at 3058.234 kb on + strand, within MPMX20_02923 at 3058.234 kb on + strand, within MPMX20_02923 at 3058.234 kb on + strand, within MPMX20_02923 at 3058.242 kb on - strand, within MPMX20_02923 at 3058.272 kb on + strand, within MPMX20_02923
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,056,024 + -2.3 3,056,047 + -2.9 3,056,083 + -2.6 3,056,083 + -2.5 3,056,083 + -0.5 3,056,159 - MPMX20_02920 0.15 -1.2 3,056,240 + MPMX20_02920 0.24 -1.7 3,056,303 + MPMX20_02920 0.30 -2.0 3,056,438 + MPMX20_02920 0.44 -2.5 3,056,438 + MPMX20_02920 0.44 -2.4 3,056,438 + MPMX20_02920 0.44 -3.1 3,056,438 + MPMX20_02920 0.44 -1.3 3,056,438 + MPMX20_02920 0.44 -1.1 3,056,446 - MPMX20_02920 0.45 -2.4 3,056,446 - MPMX20_02920 0.45 +1.4 3,056,446 - MPMX20_02920 0.45 +0.8 3,056,446 - MPMX20_02920 0.45 -1.1 3,056,487 - MPMX20_02920 0.49 -1.0 3,056,499 + MPMX20_02920 0.50 -0.3 3,056,522 + MPMX20_02920 0.53 -2.7 3,056,530 - MPMX20_02920 0.53 -1.5 3,056,695 - MPMX20_02920 0.70 -1.0 3,056,860 - MPMX20_02920 0.87 -1.2 3,056,901 + -0.7 3,056,901 + -2.0 3,056,909 - -0.9 3,056,926 - -2.0 3,056,930 + -1.4 3,056,993 + -0.3 3,057,027 + MPMX20_02921 0.13 -0.5 3,057,027 + MPMX20_02921 0.13 -1.2 3,057,027 + MPMX20_02921 0.13 -1.5 3,057,032 + MPMX20_02921 0.15 -0.4 3,057,032 + MPMX20_02921 0.15 -0.7 3,057,032 + MPMX20_02921 0.15 -1.5 3,057,032 + MPMX20_02921 0.15 -1.0 3,057,032 + MPMX20_02921 0.15 +1.5 3,057,032 + MPMX20_02921 0.15 -2.9 3,057,032 + MPMX20_02921 0.15 +1.3 3,057,032 + MPMX20_02921 0.15 -1.6 3,057,032 + MPMX20_02921 0.15 -2.1 3,057,035 - MPMX20_02921 0.16 -0.9 3,057,035 - MPMX20_02921 0.16 -0.6 3,057,040 - MPMX20_02921 0.18 -2.1 3,057,040 - MPMX20_02921 0.18 -1.3 3,057,040 - MPMX20_02921 0.18 -1.1 3,057,040 - MPMX20_02921 0.18 -0.7 3,057,040 - MPMX20_02921 0.18 -1.1 3,057,126 + MPMX20_02921 0.48 -1.3 3,057,129 - MPMX20_02921 0.49 -0.4 3,057,158 - MPMX20_02921 0.59 -1.6 3,057,161 + MPMX20_02921 0.60 -0.5 3,057,220 + MPMX20_02921 0.81 -0.8 3,057,235 + MPMX20_02921 0.86 -0.5 3,057,235 + MPMX20_02921 0.86 -1.1 3,057,235 + MPMX20_02921 0.86 -0.8 3,057,235 + MPMX20_02921 0.86 -0.7 3,057,239 - MPMX20_02921 0.88 -2.1 3,057,239 - MPMX20_02921 0.88 +0.4 3,057,243 - MPMX20_02921 0.89 -0.1 3,057,243 - MPMX20_02921 0.89 -0.0 3,057,250 - -0.2 3,057,250 - -1.6 3,057,257 - -0.2 3,057,260 - -1.4 3,057,360 - -1.8 3,057,372 - -0.7 3,057,374 + -1.9 3,057,374 - -1.2 3,057,450 + MPMX20_02922 0.19 -1.6 3,057,458 - MPMX20_02922 0.20 -3.1 3,057,458 - MPMX20_02922 0.20 -0.6 3,057,571 - MPMX20_02922 0.33 -0.7 3,057,621 - MPMX20_02922 0.39 -0.9 3,057,677 - MPMX20_02922 0.46 -1.0 3,057,681 + MPMX20_02922 0.46 -0.5 3,057,747 - MPMX20_02922 0.54 -0.5 3,057,834 + MPMX20_02922 0.64 -1.4 3,057,842 - MPMX20_02922 0.65 -0.9 3,057,845 + MPMX20_02922 0.65 +0.3 3,057,853 - MPMX20_02922 0.66 -0.5 3,057,858 + MPMX20_02922 0.67 -0.5 3,057,889 - MPMX20_02922 0.71 -1.3 3,057,921 - MPMX20_02922 0.74 +0.6 3,057,970 - MPMX20_02922 0.80 -0.7 3,058,009 + MPMX20_02922 0.85 -0.9 3,058,035 - MPMX20_02922 0.88 -1.6 3,058,064 + +2.5 3,058,064 + -1.4 3,058,064 + -1.7 3,058,064 + -0.4 3,058,072 - -2.2 3,058,072 - -1.3 3,058,072 - -0.6 3,058,072 - +2.6 3,058,096 + +0.1 3,058,105 - -0.9 3,058,144 + -0.1 3,058,144 + -2.5 3,058,149 + -1.8 3,058,152 - -1.4 3,058,195 - -1.3 3,058,234 + MPMX20_02923 0.15 -1.2 3,058,234 + MPMX20_02923 0.15 -1.9 3,058,234 + MPMX20_02923 0.15 -0.9 3,058,234 + MPMX20_02923 0.15 -0.7 3,058,242 - MPMX20_02923 0.16 -0.8 3,058,272 + MPMX20_02923 0.20 -0.9
Or see this region's nucleotide sequence