Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02453 and MPMX20_02454 are separated by 35 nucleotides MPMX20_02454 and MPMX20_02455 are separated by 113 nucleotides
MPMX20_02453: MPMX20_02453 - hypothetical protein, at 2,591,774 to 2,592,982
_02453
MPMX20_02454: MPMX20_02454 - Transcriptional regulatory protein TyrR, at 2,593,018 to 2,594,559
_02454
MPMX20_02455: MPMX20_02455 - hypothetical protein, at 2,594,673 to 2,595,725
_02455
Position (kb)
2593
2594
2595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2592.035 kb on + strand, within MPMX20_02453 at 2592.038 kb on - strand, within MPMX20_02453 at 2592.038 kb on - strand, within MPMX20_02453 at 2592.043 kb on - strand, within MPMX20_02453 at 2592.047 kb on + strand, within MPMX20_02453 at 2592.086 kb on + strand, within MPMX20_02453 at 2592.187 kb on - strand, within MPMX20_02453 at 2592.230 kb on + strand, within MPMX20_02453 at 2592.230 kb on + strand, within MPMX20_02453 at 2592.230 kb on + strand, within MPMX20_02453 at 2592.238 kb on - strand, within MPMX20_02453 at 2592.238 kb on - strand, within MPMX20_02453 at 2592.280 kb on + strand, within MPMX20_02453 at 2592.378 kb on - strand, within MPMX20_02453 at 2592.384 kb on + strand, within MPMX20_02453 at 2592.384 kb on + strand, within MPMX20_02453 at 2592.394 kb on + strand, within MPMX20_02453 at 2592.501 kb on + strand, within MPMX20_02453 at 2592.576 kb on - strand, within MPMX20_02453 at 2592.578 kb on - strand, within MPMX20_02453 at 2592.599 kb on - strand, within MPMX20_02453 at 2592.605 kb on - strand, within MPMX20_02453 at 2592.659 kb on - strand, within MPMX20_02453 at 2592.661 kb on + strand, within MPMX20_02453 at 2592.724 kb on - strand, within MPMX20_02453 at 2592.724 kb on - strand, within MPMX20_02453 at 2592.744 kb on + strand, within MPMX20_02453 at 2592.866 kb on - strand at 2592.868 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.870 kb on + strand at 2592.876 kb on - strand at 2592.876 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.878 kb on - strand at 2592.898 kb on + strand at 2592.906 kb on - strand at 2592.928 kb on + strand at 2592.940 kb on + strand at 2592.948 kb on - strand at 2592.948 kb on - strand at 2593.028 kb on + strand at 2593.036 kb on - strand at 2593.053 kb on + strand at 2593.104 kb on + strand at 2593.104 kb on + strand at 2593.138 kb on + strand at 2593.194 kb on + strand, within MPMX20_02454 at 2593.194 kb on + strand, within MPMX20_02454 at 2593.202 kb on + strand, within MPMX20_02454 at 2593.273 kb on - strand, within MPMX20_02454 at 2593.323 kb on + strand, within MPMX20_02454 at 2593.358 kb on + strand, within MPMX20_02454 at 2593.366 kb on - strand, within MPMX20_02454 at 2593.469 kb on - strand, within MPMX20_02454 at 2593.476 kb on - strand, within MPMX20_02454 at 2593.494 kb on - strand, within MPMX20_02454 at 2593.497 kb on - strand, within MPMX20_02454 at 2593.555 kb on - strand, within MPMX20_02454 at 2593.682 kb on - strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.685 kb on + strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.693 kb on - strand, within MPMX20_02454 at 2593.774 kb on + strand, within MPMX20_02454 at 2593.945 kb on - strand, within MPMX20_02454 at 2594.004 kb on + strand, within MPMX20_02454 at 2594.006 kb on + strand, within MPMX20_02454 at 2594.012 kb on - strand, within MPMX20_02454 at 2594.012 kb on - strand, within MPMX20_02454 at 2594.014 kb on - strand, within MPMX20_02454 at 2594.040 kb on - strand, within MPMX20_02454 at 2594.081 kb on - strand, within MPMX20_02454 at 2594.186 kb on + strand, within MPMX20_02454 at 2594.207 kb on + strand, within MPMX20_02454 at 2594.226 kb on + strand, within MPMX20_02454 at 2594.236 kb on + strand, within MPMX20_02454 at 2594.249 kb on + strand, within MPMX20_02454 at 2594.285 kb on + strand, within MPMX20_02454 at 2594.293 kb on - strand, within MPMX20_02454 at 2594.293 kb on - strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.297 kb on + strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.305 kb on - strand, within MPMX20_02454 at 2594.340 kb on + strand, within MPMX20_02454 at 2594.350 kb on - strand, within MPMX20_02454 at 2594.354 kb on + strand, within MPMX20_02454 at 2594.523 kb on + strand at 2594.526 kb on - strand at 2594.531 kb on - strand at 2594.531 kb on - strand at 2594.532 kb on + strand at 2594.533 kb on + strand at 2594.540 kb on - strand at 2594.701 kb on + strand at 2594.709 kb on - strand at 2594.709 kb on - strand at 2594.709 kb on - strand at 2594.769 kb on - strand at 2594.776 kb on - strand at 2594.799 kb on + strand, within MPMX20_02455 at 2594.827 kb on + strand, within MPMX20_02455 at 2594.835 kb on - strand, within MPMX20_02455 at 2594.835 kb on - strand, within MPMX20_02455 at 2594.885 kb on - strand, within MPMX20_02455 at 2594.937 kb on - strand, within MPMX20_02455 at 2594.949 kb on + strand, within MPMX20_02455 at 2594.957 kb on - strand, within MPMX20_02455 at 2595.020 kb on + strand, within MPMX20_02455 at 2595.020 kb on + strand, within MPMX20_02455 at 2595.028 kb on - strand, within MPMX20_02455 at 2595.043 kb on + strand, within MPMX20_02455 at 2595.051 kb on - strand, within MPMX20_02455 at 2595.080 kb on + strand, within MPMX20_02455 at 2595.151 kb on - strand, within MPMX20_02455 at 2595.176 kb on + strand, within MPMX20_02455 at 2595.177 kb on + strand, within MPMX20_02455 at 2595.205 kb on - strand, within MPMX20_02455 at 2595.292 kb on + strand, within MPMX20_02455 at 2595.368 kb on + strand, within MPMX20_02455 at 2595.432 kb on + strand, within MPMX20_02455 at 2595.440 kb on - strand, within MPMX20_02455 at 2595.440 kb on - strand, within MPMX20_02455 at 2595.468 kb on + strand, within MPMX20_02455 at 2595.515 kb on + strand, within MPMX20_02455
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 2,592,035 + MPMX20_02453 0.22 -0.1 2,592,038 - MPMX20_02453 0.22 -1.2 2,592,038 - MPMX20_02453 0.22 -1.0 2,592,043 - MPMX20_02453 0.22 +0.6 2,592,047 + MPMX20_02453 0.23 +0.1 2,592,086 + MPMX20_02453 0.26 -0.9 2,592,187 - MPMX20_02453 0.34 +0.8 2,592,230 + MPMX20_02453 0.38 -1.1 2,592,230 + MPMX20_02453 0.38 -0.5 2,592,230 + MPMX20_02453 0.38 -1.8 2,592,238 - MPMX20_02453 0.38 +0.1 2,592,238 - MPMX20_02453 0.38 -0.5 2,592,280 + MPMX20_02453 0.42 +1.9 2,592,378 - MPMX20_02453 0.50 -1.2 2,592,384 + MPMX20_02453 0.50 -0.3 2,592,384 + MPMX20_02453 0.50 -2.1 2,592,394 + MPMX20_02453 0.51 -0.8 2,592,501 + MPMX20_02453 0.60 -1.5 2,592,576 - MPMX20_02453 0.66 +0.5 2,592,578 - MPMX20_02453 0.67 +0.6 2,592,599 - MPMX20_02453 0.68 +0.3 2,592,605 - MPMX20_02453 0.69 +0.2 2,592,659 - MPMX20_02453 0.73 -1.5 2,592,661 + MPMX20_02453 0.73 -2.4 2,592,724 - MPMX20_02453 0.79 -2.5 2,592,724 - MPMX20_02453 0.79 -0.1 2,592,744 + MPMX20_02453 0.80 -2.2 2,592,866 - -1.0 2,592,868 + -0.9 2,592,870 + -0.2 2,592,870 + -0.7 2,592,870 + -1.8 2,592,870 + +0.2 2,592,870 + +0.9 2,592,870 + -0.1 2,592,870 + -2.5 2,592,870 + -1.2 2,592,870 + +0.3 2,592,870 + +0.6 2,592,870 + +1.9 2,592,870 + -1.0 2,592,876 - +0.3 2,592,876 - +0.6 2,592,878 - -0.1 2,592,878 - -0.5 2,592,878 - +0.6 2,592,878 - -0.1 2,592,878 - +0.2 2,592,878 - -2.0 2,592,878 - +0.2 2,592,878 - +1.3 2,592,898 + -1.8 2,592,906 - -1.0 2,592,928 + -0.2 2,592,940 + -1.2 2,592,948 - +0.0 2,592,948 - -0.2 2,593,028 + -1.1 2,593,036 - -0.5 2,593,053 + +1.9 2,593,104 + -0.5 2,593,104 + -0.4 2,593,138 + -0.1 2,593,194 + MPMX20_02454 0.11 +1.3 2,593,194 + MPMX20_02454 0.11 -0.5 2,593,202 + MPMX20_02454 0.12 -0.2 2,593,273 - MPMX20_02454 0.17 +1.3 2,593,323 + MPMX20_02454 0.20 -2.4 2,593,358 + MPMX20_02454 0.22 -1.7 2,593,366 - MPMX20_02454 0.23 +0.8 2,593,469 - MPMX20_02454 0.29 -2.0 2,593,476 - MPMX20_02454 0.30 -2.2 2,593,494 - MPMX20_02454 0.31 -0.5 2,593,497 - MPMX20_02454 0.31 +0.9 2,593,555 - MPMX20_02454 0.35 -1.2 2,593,682 - MPMX20_02454 0.43 -2.2 2,593,685 + MPMX20_02454 0.43 -0.7 2,593,685 + MPMX20_02454 0.43 -0.7 2,593,685 + MPMX20_02454 0.43 -3.0 2,593,693 - MPMX20_02454 0.44 -2.6 2,593,693 - MPMX20_02454 0.44 +0.8 2,593,693 - MPMX20_02454 0.44 -0.1 2,593,774 + MPMX20_02454 0.49 -1.0 2,593,945 - MPMX20_02454 0.60 +0.1 2,594,004 + MPMX20_02454 0.64 -0.7 2,594,006 + MPMX20_02454 0.64 +1.1 2,594,012 - MPMX20_02454 0.64 +1.2 2,594,012 - MPMX20_02454 0.64 +3.3 2,594,014 - MPMX20_02454 0.65 -1.1 2,594,040 - MPMX20_02454 0.66 -1.4 2,594,081 - MPMX20_02454 0.69 -1.6 2,594,186 + MPMX20_02454 0.76 +1.6 2,594,207 + MPMX20_02454 0.77 +6.7 2,594,226 + MPMX20_02454 0.78 +0.2 2,594,236 + MPMX20_02454 0.79 +3.6 2,594,249 + MPMX20_02454 0.80 -1.3 2,594,285 + MPMX20_02454 0.82 -1.5 2,594,293 - MPMX20_02454 0.83 -1.9 2,594,293 - MPMX20_02454 0.83 -0.8 2,594,297 + MPMX20_02454 0.83 -0.8 2,594,297 + MPMX20_02454 0.83 -0.5 2,594,297 + MPMX20_02454 0.83 -1.2 2,594,297 + MPMX20_02454 0.83 -2.4 2,594,297 + MPMX20_02454 0.83 +0.9 2,594,297 + MPMX20_02454 0.83 +0.9 2,594,305 - MPMX20_02454 0.83 -1.3 2,594,305 - MPMX20_02454 0.83 +0.4 2,594,305 - MPMX20_02454 0.83 -0.2 2,594,305 - MPMX20_02454 0.83 -2.0 2,594,305 - MPMX20_02454 0.83 -1.9 2,594,305 - MPMX20_02454 0.83 -0.8 2,594,305 - MPMX20_02454 0.83 -0.2 2,594,305 - MPMX20_02454 0.83 -0.9 2,594,340 + MPMX20_02454 0.86 -1.1 2,594,350 - MPMX20_02454 0.86 +2.8 2,594,354 + MPMX20_02454 0.87 -1.5 2,594,523 + -0.1 2,594,526 - -0.9 2,594,531 - -1.1 2,594,531 - -1.1 2,594,532 + -1.9 2,594,533 + -1.3 2,594,540 - -0.9 2,594,701 + +0.3 2,594,709 - +0.6 2,594,709 - -1.9 2,594,709 - -1.4 2,594,769 - -1.0 2,594,776 - +0.9 2,594,799 + MPMX20_02455 0.12 -0.6 2,594,827 + MPMX20_02455 0.15 -1.6 2,594,835 - MPMX20_02455 0.15 -0.4 2,594,835 - MPMX20_02455 0.15 -0.2 2,594,885 - MPMX20_02455 0.20 -0.4 2,594,937 - MPMX20_02455 0.25 -1.8 2,594,949 + MPMX20_02455 0.26 +0.3 2,594,957 - MPMX20_02455 0.27 -0.5 2,595,020 + MPMX20_02455 0.33 +0.4 2,595,020 + MPMX20_02455 0.33 +0.2 2,595,028 - MPMX20_02455 0.34 -2.4 2,595,043 + MPMX20_02455 0.35 -0.6 2,595,051 - MPMX20_02455 0.36 -0.9 2,595,080 + MPMX20_02455 0.39 +0.1 2,595,151 - MPMX20_02455 0.45 -1.6 2,595,176 + MPMX20_02455 0.48 +0.8 2,595,177 + MPMX20_02455 0.48 +0.2 2,595,205 - MPMX20_02455 0.51 +1.1 2,595,292 + MPMX20_02455 0.59 -1.5 2,595,368 + MPMX20_02455 0.66 -1.2 2,595,432 + MPMX20_02455 0.72 -0.8 2,595,440 - MPMX20_02455 0.73 -1.8 2,595,440 - MPMX20_02455 0.73 -0.1 2,595,468 + MPMX20_02455 0.75 -0.4 2,595,515 + MPMX20_02455 0.80 -1.2
Or see this region's nucleotide sequence