Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02454

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02453 and MPMX20_02454 are separated by 35 nucleotidesMPMX20_02454 and MPMX20_02455 are separated by 113 nucleotides MPMX20_02453: MPMX20_02453 - hypothetical protein, at 2,591,774 to 2,592,982 _02453 MPMX20_02454: MPMX20_02454 - Transcriptional regulatory protein TyrR, at 2,593,018 to 2,594,559 _02454 MPMX20_02455: MPMX20_02455 - hypothetical protein, at 2,594,673 to 2,595,725 _02455 Position (kb) 2593 2594 2595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2592.035 kb on + strand, within MPMX20_02453at 2592.038 kb on - strand, within MPMX20_02453at 2592.038 kb on - strand, within MPMX20_02453at 2592.043 kb on - strand, within MPMX20_02453at 2592.047 kb on + strand, within MPMX20_02453at 2592.086 kb on + strand, within MPMX20_02453at 2592.187 kb on - strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.238 kb on - strand, within MPMX20_02453at 2592.238 kb on - strand, within MPMX20_02453at 2592.280 kb on + strand, within MPMX20_02453at 2592.378 kb on - strand, within MPMX20_02453at 2592.384 kb on + strand, within MPMX20_02453at 2592.384 kb on + strand, within MPMX20_02453at 2592.394 kb on + strand, within MPMX20_02453at 2592.501 kb on + strand, within MPMX20_02453at 2592.576 kb on - strand, within MPMX20_02453at 2592.578 kb on - strand, within MPMX20_02453at 2592.599 kb on - strand, within MPMX20_02453at 2592.605 kb on - strand, within MPMX20_02453at 2592.659 kb on - strand, within MPMX20_02453at 2592.661 kb on + strand, within MPMX20_02453at 2592.724 kb on - strand, within MPMX20_02453at 2592.724 kb on - strand, within MPMX20_02453at 2592.744 kb on + strand, within MPMX20_02453at 2592.866 kb on - strandat 2592.868 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.870 kb on + strandat 2592.876 kb on - strandat 2592.876 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.878 kb on - strandat 2592.898 kb on + strandat 2592.906 kb on - strandat 2592.928 kb on + strandat 2592.940 kb on + strandat 2592.948 kb on - strandat 2592.948 kb on - strandat 2593.028 kb on + strandat 2593.036 kb on - strandat 2593.053 kb on + strandat 2593.104 kb on + strandat 2593.104 kb on + strandat 2593.138 kb on + strandat 2593.194 kb on + strand, within MPMX20_02454at 2593.194 kb on + strand, within MPMX20_02454at 2593.202 kb on + strand, within MPMX20_02454at 2593.273 kb on - strand, within MPMX20_02454at 2593.323 kb on + strand, within MPMX20_02454at 2593.358 kb on + strand, within MPMX20_02454at 2593.366 kb on - strand, within MPMX20_02454at 2593.469 kb on - strand, within MPMX20_02454at 2593.476 kb on - strand, within MPMX20_02454at 2593.494 kb on - strand, within MPMX20_02454at 2593.497 kb on - strand, within MPMX20_02454at 2593.555 kb on - strand, within MPMX20_02454at 2593.682 kb on - strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.685 kb on + strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.693 kb on - strand, within MPMX20_02454at 2593.774 kb on + strand, within MPMX20_02454at 2593.945 kb on - strand, within MPMX20_02454at 2594.004 kb on + strand, within MPMX20_02454at 2594.006 kb on + strand, within MPMX20_02454at 2594.012 kb on - strand, within MPMX20_02454at 2594.012 kb on - strand, within MPMX20_02454at 2594.014 kb on - strand, within MPMX20_02454at 2594.040 kb on - strand, within MPMX20_02454at 2594.081 kb on - strand, within MPMX20_02454at 2594.186 kb on + strand, within MPMX20_02454at 2594.207 kb on + strand, within MPMX20_02454at 2594.226 kb on + strand, within MPMX20_02454at 2594.236 kb on + strand, within MPMX20_02454at 2594.249 kb on + strand, within MPMX20_02454at 2594.285 kb on + strand, within MPMX20_02454at 2594.293 kb on - strand, within MPMX20_02454at 2594.293 kb on - strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.297 kb on + strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.305 kb on - strand, within MPMX20_02454at 2594.340 kb on + strand, within MPMX20_02454at 2594.350 kb on - strand, within MPMX20_02454at 2594.354 kb on + strand, within MPMX20_02454at 2594.523 kb on + strandat 2594.526 kb on - strandat 2594.531 kb on - strandat 2594.531 kb on - strandat 2594.532 kb on + strandat 2594.533 kb on + strandat 2594.540 kb on - strandat 2594.701 kb on + strandat 2594.709 kb on - strandat 2594.709 kb on - strandat 2594.709 kb on - strandat 2594.769 kb on - strandat 2594.776 kb on - strandat 2594.799 kb on + strand, within MPMX20_02455at 2594.827 kb on + strand, within MPMX20_02455at 2594.835 kb on - strand, within MPMX20_02455at 2594.835 kb on - strand, within MPMX20_02455at 2594.885 kb on - strand, within MPMX20_02455at 2594.937 kb on - strand, within MPMX20_02455at 2594.949 kb on + strand, within MPMX20_02455at 2594.957 kb on - strand, within MPMX20_02455at 2595.020 kb on + strand, within MPMX20_02455at 2595.020 kb on + strand, within MPMX20_02455at 2595.028 kb on - strand, within MPMX20_02455at 2595.043 kb on + strand, within MPMX20_02455at 2595.051 kb on - strand, within MPMX20_02455at 2595.080 kb on + strand, within MPMX20_02455at 2595.151 kb on - strand, within MPMX20_02455at 2595.176 kb on + strand, within MPMX20_02455at 2595.177 kb on + strand, within MPMX20_02455at 2595.205 kb on - strand, within MPMX20_02455at 2595.292 kb on + strand, within MPMX20_02455at 2595.368 kb on + strand, within MPMX20_02455at 2595.432 kb on + strand, within MPMX20_02455at 2595.440 kb on - strand, within MPMX20_02455at 2595.440 kb on - strand, within MPMX20_02455at 2595.468 kb on + strand, within MPMX20_02455at 2595.515 kb on + strand, within MPMX20_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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2,592,035 + MPMX20_02453 0.22 -0.1
2,592,038 - MPMX20_02453 0.22 -1.2
2,592,038 - MPMX20_02453 0.22 -1.0
2,592,043 - MPMX20_02453 0.22 +0.6
2,592,047 + MPMX20_02453 0.23 +0.1
2,592,086 + MPMX20_02453 0.26 -0.9
2,592,187 - MPMX20_02453 0.34 +0.8
2,592,230 + MPMX20_02453 0.38 -1.1
2,592,230 + MPMX20_02453 0.38 -0.5
2,592,230 + MPMX20_02453 0.38 -1.8
2,592,238 - MPMX20_02453 0.38 +0.1
2,592,238 - MPMX20_02453 0.38 -0.5
2,592,280 + MPMX20_02453 0.42 +1.9
2,592,378 - MPMX20_02453 0.50 -1.2
2,592,384 + MPMX20_02453 0.50 -0.3
2,592,384 + MPMX20_02453 0.50 -2.1
2,592,394 + MPMX20_02453 0.51 -0.8
2,592,501 + MPMX20_02453 0.60 -1.5
2,592,576 - MPMX20_02453 0.66 +0.5
2,592,578 - MPMX20_02453 0.67 +0.6
2,592,599 - MPMX20_02453 0.68 +0.3
2,592,605 - MPMX20_02453 0.69 +0.2
2,592,659 - MPMX20_02453 0.73 -1.5
2,592,661 + MPMX20_02453 0.73 -2.4
2,592,724 - MPMX20_02453 0.79 -2.5
2,592,724 - MPMX20_02453 0.79 -0.1
2,592,744 + MPMX20_02453 0.80 -2.2
2,592,866 - -1.0
2,592,868 + -0.9
2,592,870 + -0.2
2,592,870 + -0.7
2,592,870 + -1.8
2,592,870 + +0.2
2,592,870 + +0.9
2,592,870 + -0.1
2,592,870 + -2.5
2,592,870 + -1.2
2,592,870 + +0.3
2,592,870 + +0.6
2,592,870 + +1.9
2,592,870 + -1.0
2,592,876 - +0.3
2,592,876 - +0.6
2,592,878 - -0.1
2,592,878 - -0.5
2,592,878 - +0.6
2,592,878 - -0.1
2,592,878 - +0.2
2,592,878 - -2.0
2,592,878 - +0.2
2,592,878 - +1.3
2,592,898 + -1.8
2,592,906 - -1.0
2,592,928 + -0.2
2,592,940 + -1.2
2,592,948 - +0.0
2,592,948 - -0.2
2,593,028 + -1.1
2,593,036 - -0.5
2,593,053 + +1.9
2,593,104 + -0.5
2,593,104 + -0.4
2,593,138 + -0.1
2,593,194 + MPMX20_02454 0.11 +1.3
2,593,194 + MPMX20_02454 0.11 -0.5
2,593,202 + MPMX20_02454 0.12 -0.2
2,593,273 - MPMX20_02454 0.17 +1.3
2,593,323 + MPMX20_02454 0.20 -2.4
2,593,358 + MPMX20_02454 0.22 -1.7
2,593,366 - MPMX20_02454 0.23 +0.8
2,593,469 - MPMX20_02454 0.29 -2.0
2,593,476 - MPMX20_02454 0.30 -2.2
2,593,494 - MPMX20_02454 0.31 -0.5
2,593,497 - MPMX20_02454 0.31 +0.9
2,593,555 - MPMX20_02454 0.35 -1.2
2,593,682 - MPMX20_02454 0.43 -2.2
2,593,685 + MPMX20_02454 0.43 -0.7
2,593,685 + MPMX20_02454 0.43 -0.7
2,593,685 + MPMX20_02454 0.43 -3.0
2,593,693 - MPMX20_02454 0.44 -2.6
2,593,693 - MPMX20_02454 0.44 +0.8
2,593,693 - MPMX20_02454 0.44 -0.1
2,593,774 + MPMX20_02454 0.49 -1.0
2,593,945 - MPMX20_02454 0.60 +0.1
2,594,004 + MPMX20_02454 0.64 -0.7
2,594,006 + MPMX20_02454 0.64 +1.1
2,594,012 - MPMX20_02454 0.64 +1.2
2,594,012 - MPMX20_02454 0.64 +3.3
2,594,014 - MPMX20_02454 0.65 -1.1
2,594,040 - MPMX20_02454 0.66 -1.4
2,594,081 - MPMX20_02454 0.69 -1.6
2,594,186 + MPMX20_02454 0.76 +1.6
2,594,207 + MPMX20_02454 0.77 +6.7
2,594,226 + MPMX20_02454 0.78 +0.2
2,594,236 + MPMX20_02454 0.79 +3.6
2,594,249 + MPMX20_02454 0.80 -1.3
2,594,285 + MPMX20_02454 0.82 -1.5
2,594,293 - MPMX20_02454 0.83 -1.9
2,594,293 - MPMX20_02454 0.83 -0.8
2,594,297 + MPMX20_02454 0.83 -0.8
2,594,297 + MPMX20_02454 0.83 -0.5
2,594,297 + MPMX20_02454 0.83 -1.2
2,594,297 + MPMX20_02454 0.83 -2.4
2,594,297 + MPMX20_02454 0.83 +0.9
2,594,297 + MPMX20_02454 0.83 +0.9
2,594,305 - MPMX20_02454 0.83 -1.3
2,594,305 - MPMX20_02454 0.83 +0.4
2,594,305 - MPMX20_02454 0.83 -0.2
2,594,305 - MPMX20_02454 0.83 -2.0
2,594,305 - MPMX20_02454 0.83 -1.9
2,594,305 - MPMX20_02454 0.83 -0.8
2,594,305 - MPMX20_02454 0.83 -0.2
2,594,305 - MPMX20_02454 0.83 -0.9
2,594,340 + MPMX20_02454 0.86 -1.1
2,594,350 - MPMX20_02454 0.86 +2.8
2,594,354 + MPMX20_02454 0.87 -1.5
2,594,523 + -0.1
2,594,526 - -0.9
2,594,531 - -1.1
2,594,531 - -1.1
2,594,532 + -1.9
2,594,533 + -1.3
2,594,540 - -0.9
2,594,701 + +0.3
2,594,709 - +0.6
2,594,709 - -1.9
2,594,709 - -1.4
2,594,769 - -1.0
2,594,776 - +0.9
2,594,799 + MPMX20_02455 0.12 -0.6
2,594,827 + MPMX20_02455 0.15 -1.6
2,594,835 - MPMX20_02455 0.15 -0.4
2,594,835 - MPMX20_02455 0.15 -0.2
2,594,885 - MPMX20_02455 0.20 -0.4
2,594,937 - MPMX20_02455 0.25 -1.8
2,594,949 + MPMX20_02455 0.26 +0.3
2,594,957 - MPMX20_02455 0.27 -0.5
2,595,020 + MPMX20_02455 0.33 +0.4
2,595,020 + MPMX20_02455 0.33 +0.2
2,595,028 - MPMX20_02455 0.34 -2.4
2,595,043 + MPMX20_02455 0.35 -0.6
2,595,051 - MPMX20_02455 0.36 -0.9
2,595,080 + MPMX20_02455 0.39 +0.1
2,595,151 - MPMX20_02455 0.45 -1.6
2,595,176 + MPMX20_02455 0.48 +0.8
2,595,177 + MPMX20_02455 0.48 +0.2
2,595,205 - MPMX20_02455 0.51 +1.1
2,595,292 + MPMX20_02455 0.59 -1.5
2,595,368 + MPMX20_02455 0.66 -1.2
2,595,432 + MPMX20_02455 0.72 -0.8
2,595,440 - MPMX20_02455 0.73 -1.8
2,595,440 - MPMX20_02455 0.73 -0.1
2,595,468 + MPMX20_02455 0.75 -0.4
2,595,515 + MPMX20_02455 0.80 -1.2

Or see this region's nucleotide sequence