Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02452

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02451 and MPMX20_02452 are separated by 107 nucleotidesMPMX20_02452 and MPMX20_02453 are separated by 332 nucleotides MPMX20_02451: MPMX20_02451 - L-Ala-D/L-Glu epimerase, at 2,589,862 to 2,590,827 _02451 MPMX20_02452: MPMX20_02452 - Thiol peroxidase, at 2,590,935 to 2,591,441 _02452 MPMX20_02453: MPMX20_02453 - hypothetical protein, at 2,591,774 to 2,592,982 _02453 Position (kb) 2590 2591 2592Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2589.989 kb on + strand, within MPMX20_02451at 2589.997 kb on + strand, within MPMX20_02451at 2589.997 kb on - strand, within MPMX20_02451at 2589.997 kb on - strand, within MPMX20_02451at 2589.997 kb on - strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2589.999 kb on + strand, within MPMX20_02451at 2590.007 kb on - strand, within MPMX20_02451at 2590.007 kb on - strand, within MPMX20_02451at 2590.007 kb on - strand, within MPMX20_02451at 2590.024 kb on + strand, within MPMX20_02451at 2590.032 kb on - strand, within MPMX20_02451at 2590.123 kb on + strand, within MPMX20_02451at 2590.140 kb on + strand, within MPMX20_02451at 2590.140 kb on + strand, within MPMX20_02451at 2590.162 kb on + strand, within MPMX20_02451at 2590.196 kb on + strand, within MPMX20_02451at 2590.204 kb on - strand, within MPMX20_02451at 2590.251 kb on + strand, within MPMX20_02451at 2590.267 kb on + strand, within MPMX20_02451at 2590.273 kb on + strand, within MPMX20_02451at 2590.280 kb on - strand, within MPMX20_02451at 2590.326 kb on - strand, within MPMX20_02451at 2590.328 kb on + strand, within MPMX20_02451at 2590.357 kb on + strand, within MPMX20_02451at 2590.432 kb on + strand, within MPMX20_02451at 2590.434 kb on + strand, within MPMX20_02451at 2590.440 kb on - strand, within MPMX20_02451at 2590.545 kb on - strand, within MPMX20_02451at 2590.545 kb on - strand, within MPMX20_02451at 2590.545 kb on - strand, within MPMX20_02451at 2590.580 kb on + strand, within MPMX20_02451at 2590.598 kb on - strand, within MPMX20_02451at 2590.714 kb on - strand, within MPMX20_02451at 2590.715 kb on - strand, within MPMX20_02451at 2590.743 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.812 kb on + strandat 2590.820 kb on - strandat 2590.836 kb on + strandat 2590.874 kb on + strandat 2590.888 kb on + strandat 2590.888 kb on + strandat 2590.896 kb on - strandat 2590.898 kb on + strandat 2590.901 kb on - strandat 2591.012 kb on + strand, within MPMX20_02452at 2591.014 kb on + strand, within MPMX20_02452at 2591.053 kb on - strand, within MPMX20_02452at 2591.062 kb on - strand, within MPMX20_02452at 2591.079 kb on + strand, within MPMX20_02452at 2591.111 kb on + strand, within MPMX20_02452at 2591.154 kb on + strand, within MPMX20_02452at 2591.159 kb on + strand, within MPMX20_02452at 2591.167 kb on + strand, within MPMX20_02452at 2591.167 kb on + strand, within MPMX20_02452at 2591.167 kb on + strand, within MPMX20_02452at 2591.175 kb on - strand, within MPMX20_02452at 2591.202 kb on + strand, within MPMX20_02452at 2591.210 kb on - strand, within MPMX20_02452at 2591.221 kb on + strand, within MPMX20_02452at 2591.224 kb on - strand, within MPMX20_02452at 2591.229 kb on + strand, within MPMX20_02452at 2591.234 kb on + strand, within MPMX20_02452at 2591.242 kb on + strand, within MPMX20_02452at 2591.251 kb on + strand, within MPMX20_02452at 2591.259 kb on - strand, within MPMX20_02452at 2591.274 kb on - strand, within MPMX20_02452at 2591.328 kb on - strand, within MPMX20_02452at 2591.335 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.337 kb on + strand, within MPMX20_02452at 2591.342 kb on + strand, within MPMX20_02452at 2591.343 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.345 kb on - strand, within MPMX20_02452at 2591.367 kb on + strand, within MPMX20_02452at 2591.367 kb on + strand, within MPMX20_02452at 2591.405 kb on + strandat 2591.405 kb on + strandat 2591.405 kb on + strandat 2591.457 kb on + strandat 2591.457 kb on + strandat 2591.457 kb on + strandat 2591.511 kb on + strandat 2591.511 kb on + strandat 2591.517 kb on + strandat 2591.600 kb on + strandat 2591.808 kb on - strandat 2591.839 kb on - strandat 2591.856 kb on - strandat 2591.856 kb on - strandat 2592.035 kb on + strand, within MPMX20_02453at 2592.038 kb on - strand, within MPMX20_02453at 2592.038 kb on - strand, within MPMX20_02453at 2592.043 kb on - strand, within MPMX20_02453at 2592.047 kb on + strand, within MPMX20_02453at 2592.086 kb on + strand, within MPMX20_02453at 2592.187 kb on - strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.230 kb on + strand, within MPMX20_02453at 2592.238 kb on - strand, within MPMX20_02453at 2592.238 kb on - strand, within MPMX20_02453at 2592.280 kb on + strand, within MPMX20_02453at 2592.378 kb on - strand, within MPMX20_02453at 2592.384 kb on + strand, within MPMX20_02453at 2592.384 kb on + strand, within MPMX20_02453at 2592.394 kb on + strand, within MPMX20_02453

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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2,589,989 + MPMX20_02451 0.13 -0.3
2,589,997 + MPMX20_02451 0.14 -0.9
2,589,997 - MPMX20_02451 0.14 -0.7
2,589,997 - MPMX20_02451 0.14 +0.9
2,589,997 - MPMX20_02451 0.14 -0.3
2,589,999 + MPMX20_02451 0.14 -0.5
2,589,999 + MPMX20_02451 0.14 -2.1
2,589,999 + MPMX20_02451 0.14 +0.0
2,589,999 + MPMX20_02451 0.14 +0.3
2,589,999 + MPMX20_02451 0.14 +0.8
2,589,999 + MPMX20_02451 0.14 -1.0
2,589,999 + MPMX20_02451 0.14 +0.9
2,590,007 - MPMX20_02451 0.15 +0.9
2,590,007 - MPMX20_02451 0.15 +1.1
2,590,007 - MPMX20_02451 0.15 +0.0
2,590,024 + MPMX20_02451 0.17 +0.6
2,590,032 - MPMX20_02451 0.18 -1.2
2,590,123 + MPMX20_02451 0.27 -1.1
2,590,140 + MPMX20_02451 0.29 -0.4
2,590,140 + MPMX20_02451 0.29 +0.1
2,590,162 + MPMX20_02451 0.31 -0.9
2,590,196 + MPMX20_02451 0.35 -0.2
2,590,204 - MPMX20_02451 0.35 -1.7
2,590,251 + MPMX20_02451 0.40 -0.7
2,590,267 + MPMX20_02451 0.42 -0.6
2,590,273 + MPMX20_02451 0.43 +1.3
2,590,280 - MPMX20_02451 0.43 -0.0
2,590,326 - MPMX20_02451 0.48 -1.0
2,590,328 + MPMX20_02451 0.48 -1.2
2,590,357 + MPMX20_02451 0.51 -0.1
2,590,432 + MPMX20_02451 0.59 -1.9
2,590,434 + MPMX20_02451 0.59 -0.7
2,590,440 - MPMX20_02451 0.60 -0.4
2,590,545 - MPMX20_02451 0.71 -1.7
2,590,545 - MPMX20_02451 0.71 -0.5
2,590,545 - MPMX20_02451 0.71 +0.7
2,590,580 + MPMX20_02451 0.74 -0.8
2,590,598 - MPMX20_02451 0.76 -1.2
2,590,714 - MPMX20_02451 0.88 +0.0
2,590,715 - MPMX20_02451 0.88 +0.4
2,590,743 + +0.3
2,590,812 + +1.9
2,590,812 + +0.3
2,590,812 + -2.9
2,590,812 + +0.0
2,590,812 + -0.5
2,590,812 + +0.8
2,590,820 - -0.7
2,590,836 + -0.9
2,590,874 + -0.4
2,590,888 + +0.9
2,590,888 + +1.9
2,590,896 - -0.9
2,590,898 + -0.6
2,590,901 - -0.9
2,591,012 + MPMX20_02452 0.15 +0.1
2,591,014 + MPMX20_02452 0.16 -1.2
2,591,053 - MPMX20_02452 0.23 +2.9
2,591,062 - MPMX20_02452 0.25 -0.9
2,591,079 + MPMX20_02452 0.28 -2.2
2,591,111 + MPMX20_02452 0.35 -0.7
2,591,154 + MPMX20_02452 0.43 -1.2
2,591,159 + MPMX20_02452 0.44 -0.4
2,591,167 + MPMX20_02452 0.46 -1.4
2,591,167 + MPMX20_02452 0.46 +1.9
2,591,167 + MPMX20_02452 0.46 -1.5
2,591,175 - MPMX20_02452 0.47 -0.7
2,591,202 + MPMX20_02452 0.53 -1.5
2,591,210 - MPMX20_02452 0.54 -1.6
2,591,221 + MPMX20_02452 0.56 +0.9
2,591,224 - MPMX20_02452 0.57 -0.2
2,591,229 + MPMX20_02452 0.58 +0.6
2,591,234 + MPMX20_02452 0.59 +1.3
2,591,242 + MPMX20_02452 0.61 -0.9
2,591,251 + MPMX20_02452 0.62 +1.5
2,591,259 - MPMX20_02452 0.64 -1.0
2,591,274 - MPMX20_02452 0.67 +0.9
2,591,328 - MPMX20_02452 0.78 +0.1
2,591,335 + MPMX20_02452 0.79 +1.2
2,591,337 + MPMX20_02452 0.79 +1.3
2,591,337 + MPMX20_02452 0.79 +0.6
2,591,337 + MPMX20_02452 0.79 -1.5
2,591,337 + MPMX20_02452 0.79 -0.6
2,591,337 + MPMX20_02452 0.79 -0.6
2,591,337 + MPMX20_02452 0.79 +0.6
2,591,337 + MPMX20_02452 0.79 -0.1
2,591,337 + MPMX20_02452 0.79 -0.1
2,591,342 + MPMX20_02452 0.80 +1.3
2,591,343 - MPMX20_02452 0.80 -0.3
2,591,345 - MPMX20_02452 0.81 +1.9
2,591,345 - MPMX20_02452 0.81 -0.2
2,591,345 - MPMX20_02452 0.81 +0.9
2,591,345 - MPMX20_02452 0.81 +0.9
2,591,367 + MPMX20_02452 0.85 -0.4
2,591,367 + MPMX20_02452 0.85 -2.5
2,591,405 + +0.8
2,591,405 + -0.8
2,591,405 + -1.3
2,591,457 + -1.0
2,591,457 + -0.9
2,591,457 + -0.1
2,591,511 + -1.2
2,591,511 + -0.1
2,591,517 + +1.9
2,591,600 + +0.6
2,591,808 - +0.1
2,591,839 - -1.6
2,591,856 - -0.3
2,591,856 - -1.2
2,592,035 + MPMX20_02453 0.22 -0.1
2,592,038 - MPMX20_02453 0.22 -1.2
2,592,038 - MPMX20_02453 0.22 -1.0
2,592,043 - MPMX20_02453 0.22 +0.6
2,592,047 + MPMX20_02453 0.23 +0.1
2,592,086 + MPMX20_02453 0.26 -0.9
2,592,187 - MPMX20_02453 0.34 +0.8
2,592,230 + MPMX20_02453 0.38 -1.1
2,592,230 + MPMX20_02453 0.38 -0.5
2,592,230 + MPMX20_02453 0.38 -1.8
2,592,238 - MPMX20_02453 0.38 +0.1
2,592,238 - MPMX20_02453 0.38 -0.5
2,592,280 + MPMX20_02453 0.42 +1.9
2,592,378 - MPMX20_02453 0.50 -1.2
2,592,384 + MPMX20_02453 0.50 -0.3
2,592,384 + MPMX20_02453 0.50 -2.1
2,592,394 + MPMX20_02453 0.51 -0.8

Or see this region's nucleotide sequence