Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01631 and MPMX20_01632 are separated by 2 nucleotides MPMX20_01632 and MPMX20_01633 are separated by 162 nucleotides
MPMX20_01631: MPMX20_01631 - Peptidoglycan-associated lipoprotein, at 1,720,776 to 1,722,455
_01631
MPMX20_01632: MPMX20_01632 - Major exported protein, at 1,722,458 to 1,722,949
_01632
MPMX20_01633: MPMX20_01633 - Protein ClpV1, at 1,723,112 to 1,725,784
_01633
Position (kb)
1722
1723 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1721.481 kb on - strand, within MPMX20_01631 at 1721.505 kb on - strand, within MPMX20_01631 at 1721.562 kb on + strand, within MPMX20_01631 at 1721.589 kb on + strand, within MPMX20_01631 at 1721.614 kb on - strand, within MPMX20_01631 at 1721.699 kb on - strand, within MPMX20_01631 at 1721.716 kb on + strand, within MPMX20_01631 at 1721.732 kb on - strand, within MPMX20_01631 at 1721.764 kb on - strand, within MPMX20_01631 at 1721.934 kb on - strand, within MPMX20_01631 at 1721.978 kb on + strand, within MPMX20_01631 at 1721.986 kb on - strand, within MPMX20_01631 at 1722.104 kb on - strand, within MPMX20_01631 at 1722.127 kb on - strand, within MPMX20_01631 at 1722.184 kb on + strand, within MPMX20_01631 at 1722.184 kb on + strand, within MPMX20_01631 at 1722.193 kb on - strand, within MPMX20_01631 at 1722.203 kb on - strand, within MPMX20_01631 at 1722.205 kb on + strand, within MPMX20_01631 at 1722.208 kb on - strand, within MPMX20_01631 at 1722.213 kb on - strand, within MPMX20_01631 at 1722.250 kb on - strand, within MPMX20_01631 at 1722.261 kb on - strand, within MPMX20_01631 at 1722.272 kb on - strand, within MPMX20_01631 at 1722.279 kb on + strand, within MPMX20_01631 at 1722.287 kb on - strand, within MPMX20_01631 at 1722.292 kb on - strand at 1722.349 kb on - strand at 1722.356 kb on + strand at 1722.382 kb on - strand at 1722.388 kb on - strand at 1722.422 kb on - strand at 1722.505 kb on + strand at 1722.562 kb on + strand, within MPMX20_01632 at 1722.572 kb on + strand, within MPMX20_01632 at 1722.572 kb on + strand, within MPMX20_01632 at 1722.572 kb on + strand, within MPMX20_01632 at 1722.581 kb on - strand, within MPMX20_01632 at 1722.604 kb on + strand, within MPMX20_01632 at 1722.635 kb on - strand, within MPMX20_01632 at 1722.673 kb on + strand, within MPMX20_01632 at 1722.673 kb on + strand, within MPMX20_01632 at 1722.673 kb on + strand, within MPMX20_01632 at 1722.673 kb on + strand, within MPMX20_01632 at 1722.698 kb on + strand, within MPMX20_01632 at 1722.698 kb on + strand, within MPMX20_01632 at 1722.715 kb on + strand, within MPMX20_01632 at 1722.715 kb on + strand, within MPMX20_01632 at 1722.721 kb on - strand, within MPMX20_01632 at 1722.760 kb on - strand, within MPMX20_01632 at 1722.781 kb on + strand, within MPMX20_01632 at 1722.840 kb on + strand, within MPMX20_01632 at 1722.849 kb on + strand, within MPMX20_01632 at 1722.849 kb on + strand, within MPMX20_01632 at 1722.857 kb on - strand, within MPMX20_01632 at 1722.857 kb on - strand, within MPMX20_01632 at 1722.857 kb on - strand, within MPMX20_01632 at 1722.891 kb on - strand, within MPMX20_01632 at 1722.899 kb on - strand, within MPMX20_01632 at 1722.940 kb on - strand at 1722.964 kb on + strand at 1722.990 kb on + strand at 1723.008 kb on - strand at 1723.020 kb on + strand at 1723.061 kb on - strand at 1723.079 kb on + strand at 1723.152 kb on - strand at 1723.174 kb on - strand at 1723.185 kb on + strand at 1723.185 kb on + strand at 1723.220 kb on + strand at 1723.231 kb on - strand at 1723.255 kb on - strand at 1723.260 kb on - strand at 1723.279 kb on - strand at 1723.295 kb on + strand at 1723.319 kb on + strand at 1723.319 kb on + strand at 1723.327 kb on - strand at 1723.327 kb on - strand at 1723.327 kb on - strand at 1723.327 kb on - strand at 1723.350 kb on - strand at 1723.350 kb on - strand at 1723.382 kb on + strand, within MPMX20_01633 at 1723.390 kb on - strand, within MPMX20_01633 at 1723.390 kb on - strand, within MPMX20_01633 at 1723.402 kb on + strand, within MPMX20_01633 at 1723.410 kb on - strand, within MPMX20_01633 at 1723.462 kb on + strand, within MPMX20_01633 at 1723.477 kb on - strand, within MPMX20_01633 at 1723.501 kb on + strand, within MPMX20_01633 at 1723.501 kb on + strand, within MPMX20_01633 at 1723.502 kb on - strand, within MPMX20_01633 at 1723.509 kb on - strand, within MPMX20_01633 at 1723.596 kb on + strand, within MPMX20_01633 at 1723.604 kb on - strand, within MPMX20_01633 at 1723.637 kb on + strand, within MPMX20_01633 at 1723.637 kb on + strand, within MPMX20_01633 at 1723.640 kb on + strand, within MPMX20_01633 at 1723.652 kb on + strand, within MPMX20_01633 at 1723.652 kb on + strand, within MPMX20_01633 at 1723.660 kb on - strand, within MPMX20_01633 at 1723.720 kb on + strand, within MPMX20_01633 at 1723.861 kb on + strand, within MPMX20_01633 at 1723.876 kb on + strand, within MPMX20_01633 at 1723.876 kb on + strand, within MPMX20_01633 at 1723.879 kb on - strand, within MPMX20_01633 at 1723.884 kb on + strand, within MPMX20_01633 at 1723.923 kb on + strand, within MPMX20_01633 at 1723.947 kb on + strand, within MPMX20_01633
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,721,481 - MPMX20_01631 0.42 +0.0 1,721,505 - MPMX20_01631 0.43 -0.3 1,721,562 + MPMX20_01631 0.47 -0.4 1,721,589 + MPMX20_01631 0.48 -0.9 1,721,614 - MPMX20_01631 0.50 +1.1 1,721,699 - MPMX20_01631 0.55 +1.3 1,721,716 + MPMX20_01631 0.56 -0.6 1,721,732 - MPMX20_01631 0.57 -0.6 1,721,764 - MPMX20_01631 0.59 -1.8 1,721,934 - MPMX20_01631 0.69 -1.2 1,721,978 + MPMX20_01631 0.72 +0.4 1,721,986 - MPMX20_01631 0.72 +0.5 1,722,104 - MPMX20_01631 0.79 -1.8 1,722,127 - MPMX20_01631 0.80 -0.2 1,722,184 + MPMX20_01631 0.84 +0.3 1,722,184 + MPMX20_01631 0.84 -1.0 1,722,193 - MPMX20_01631 0.84 -0.9 1,722,203 - MPMX20_01631 0.85 -1.0 1,722,205 + MPMX20_01631 0.85 -0.1 1,722,208 - MPMX20_01631 0.85 -1.0 1,722,213 - MPMX20_01631 0.86 +1.8 1,722,250 - MPMX20_01631 0.88 -0.7 1,722,261 - MPMX20_01631 0.88 -1.0 1,722,272 - MPMX20_01631 0.89 -0.9 1,722,279 + MPMX20_01631 0.89 -0.7 1,722,287 - MPMX20_01631 0.90 -2.0 1,722,292 - -1.4 1,722,349 - +1.0 1,722,356 + -0.5 1,722,382 - -1.4 1,722,388 - +1.3 1,722,422 - +0.0 1,722,505 + -0.5 1,722,562 + MPMX20_01632 0.21 -1.1 1,722,572 + MPMX20_01632 0.23 -0.1 1,722,572 + MPMX20_01632 0.23 -1.2 1,722,572 + MPMX20_01632 0.23 -0.3 1,722,581 - MPMX20_01632 0.25 -0.5 1,722,604 + MPMX20_01632 0.30 -0.7 1,722,635 - MPMX20_01632 0.36 -0.2 1,722,673 + MPMX20_01632 0.44 -1.7 1,722,673 + MPMX20_01632 0.44 +0.0 1,722,673 + MPMX20_01632 0.44 -0.9 1,722,673 + MPMX20_01632 0.44 +0.4 1,722,698 + MPMX20_01632 0.49 -0.9 1,722,698 + MPMX20_01632 0.49 +0.4 1,722,715 + MPMX20_01632 0.52 -1.2 1,722,715 + MPMX20_01632 0.52 -0.9 1,722,721 - MPMX20_01632 0.53 -1.0 1,722,760 - MPMX20_01632 0.61 -1.1 1,722,781 + MPMX20_01632 0.66 -0.9 1,722,840 + MPMX20_01632 0.78 +0.4 1,722,849 + MPMX20_01632 0.79 -1.1 1,722,849 + MPMX20_01632 0.79 -0.2 1,722,857 - MPMX20_01632 0.81 +0.7 1,722,857 - MPMX20_01632 0.81 -2.4 1,722,857 - MPMX20_01632 0.81 -1.9 1,722,891 - MPMX20_01632 0.88 -1.1 1,722,899 - MPMX20_01632 0.90 -0.2 1,722,940 - -1.2 1,722,964 + +0.4 1,722,990 + +0.3 1,723,008 - +0.3 1,723,020 + +1.0 1,723,061 - -0.4 1,723,079 + +1.4 1,723,152 - +2.3 1,723,174 - -3.0 1,723,185 + -1.7 1,723,185 + +1.5 1,723,220 + -0.1 1,723,231 - +3.4 1,723,255 - -0.7 1,723,260 - -0.9 1,723,279 - -1.5 1,723,295 + +8.8 1,723,319 + +0.0 1,723,319 + +0.5 1,723,327 - +0.4 1,723,327 - -0.8 1,723,327 - +0.5 1,723,327 - -1.0 1,723,350 - -0.5 1,723,350 - +0.2 1,723,382 + MPMX20_01633 0.10 +0.8 1,723,390 - MPMX20_01633 0.10 -0.2 1,723,390 - MPMX20_01633 0.10 +0.7 1,723,402 + MPMX20_01633 0.11 +1.1 1,723,410 - MPMX20_01633 0.11 -0.7 1,723,462 + MPMX20_01633 0.13 -0.0 1,723,477 - MPMX20_01633 0.14 -0.3 1,723,501 + MPMX20_01633 0.15 +0.3 1,723,501 + MPMX20_01633 0.15 -0.6 1,723,502 - MPMX20_01633 0.15 +1.3 1,723,509 - MPMX20_01633 0.15 +0.7 1,723,596 + MPMX20_01633 0.18 +0.4 1,723,604 - MPMX20_01633 0.18 +1.2 1,723,637 + MPMX20_01633 0.20 -0.9 1,723,637 + MPMX20_01633 0.20 -0.3 1,723,640 + MPMX20_01633 0.20 -0.5 1,723,652 + MPMX20_01633 0.20 -0.6 1,723,652 + MPMX20_01633 0.20 -0.6 1,723,660 - MPMX20_01633 0.21 -1.2 1,723,720 + MPMX20_01633 0.23 -0.5 1,723,861 + MPMX20_01633 0.28 +1.5 1,723,876 + MPMX20_01633 0.29 -1.4 1,723,876 + MPMX20_01633 0.29 -1.2 1,723,879 - MPMX20_01633 0.29 -0.6 1,723,884 + MPMX20_01633 0.29 -3.2 1,723,923 + MPMX20_01633 0.30 +0.7 1,723,947 + MPMX20_01633 0.31 -0.9
Or see this region's nucleotide sequence