Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01632

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01631 and MPMX20_01632 are separated by 2 nucleotidesMPMX20_01632 and MPMX20_01633 are separated by 162 nucleotides MPMX20_01631: MPMX20_01631 - Peptidoglycan-associated lipoprotein, at 1,720,776 to 1,722,455 _01631 MPMX20_01632: MPMX20_01632 - Major exported protein, at 1,722,458 to 1,722,949 _01632 MPMX20_01633: MPMX20_01633 - Protein ClpV1, at 1,723,112 to 1,725,784 _01633 Position (kb) 1722 1723Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 1721.481 kb on - strand, within MPMX20_01631at 1721.505 kb on - strand, within MPMX20_01631at 1721.562 kb on + strand, within MPMX20_01631at 1721.589 kb on + strand, within MPMX20_01631at 1721.614 kb on - strand, within MPMX20_01631at 1721.699 kb on - strand, within MPMX20_01631at 1721.716 kb on + strand, within MPMX20_01631at 1721.732 kb on - strand, within MPMX20_01631at 1721.764 kb on - strand, within MPMX20_01631at 1721.934 kb on - strand, within MPMX20_01631at 1721.978 kb on + strand, within MPMX20_01631at 1721.986 kb on - strand, within MPMX20_01631at 1722.104 kb on - strand, within MPMX20_01631at 1722.127 kb on - strand, within MPMX20_01631at 1722.184 kb on + strand, within MPMX20_01631at 1722.184 kb on + strand, within MPMX20_01631at 1722.193 kb on - strand, within MPMX20_01631at 1722.203 kb on - strand, within MPMX20_01631at 1722.205 kb on + strand, within MPMX20_01631at 1722.208 kb on - strand, within MPMX20_01631at 1722.213 kb on - strand, within MPMX20_01631at 1722.250 kb on - strand, within MPMX20_01631at 1722.261 kb on - strand, within MPMX20_01631at 1722.272 kb on - strand, within MPMX20_01631at 1722.279 kb on + strand, within MPMX20_01631at 1722.287 kb on - strand, within MPMX20_01631at 1722.292 kb on - strandat 1722.349 kb on - strandat 1722.356 kb on + strandat 1722.382 kb on - strandat 1722.388 kb on - strandat 1722.422 kb on - strandat 1722.505 kb on + strandat 1722.562 kb on + strand, within MPMX20_01632at 1722.572 kb on + strand, within MPMX20_01632at 1722.572 kb on + strand, within MPMX20_01632at 1722.572 kb on + strand, within MPMX20_01632at 1722.581 kb on - strand, within MPMX20_01632at 1722.604 kb on + strand, within MPMX20_01632at 1722.635 kb on - strand, within MPMX20_01632at 1722.673 kb on + strand, within MPMX20_01632at 1722.673 kb on + strand, within MPMX20_01632at 1722.673 kb on + strand, within MPMX20_01632at 1722.673 kb on + strand, within MPMX20_01632at 1722.698 kb on + strand, within MPMX20_01632at 1722.698 kb on + strand, within MPMX20_01632at 1722.715 kb on + strand, within MPMX20_01632at 1722.715 kb on + strand, within MPMX20_01632at 1722.721 kb on - strand, within MPMX20_01632at 1722.760 kb on - strand, within MPMX20_01632at 1722.781 kb on + strand, within MPMX20_01632at 1722.840 kb on + strand, within MPMX20_01632at 1722.849 kb on + strand, within MPMX20_01632at 1722.849 kb on + strand, within MPMX20_01632at 1722.857 kb on - strand, within MPMX20_01632at 1722.857 kb on - strand, within MPMX20_01632at 1722.857 kb on - strand, within MPMX20_01632at 1722.891 kb on - strand, within MPMX20_01632at 1722.899 kb on - strand, within MPMX20_01632at 1722.940 kb on - strandat 1722.964 kb on + strandat 1722.990 kb on + strandat 1723.008 kb on - strandat 1723.020 kb on + strandat 1723.061 kb on - strandat 1723.079 kb on + strandat 1723.152 kb on - strandat 1723.174 kb on - strandat 1723.185 kb on + strandat 1723.185 kb on + strandat 1723.220 kb on + strandat 1723.231 kb on - strandat 1723.255 kb on - strandat 1723.260 kb on - strandat 1723.279 kb on - strandat 1723.295 kb on + strandat 1723.319 kb on + strandat 1723.319 kb on + strandat 1723.327 kb on - strandat 1723.327 kb on - strandat 1723.327 kb on - strandat 1723.327 kb on - strandat 1723.350 kb on - strandat 1723.350 kb on - strandat 1723.382 kb on + strand, within MPMX20_01633at 1723.390 kb on - strand, within MPMX20_01633at 1723.390 kb on - strand, within MPMX20_01633at 1723.402 kb on + strand, within MPMX20_01633at 1723.410 kb on - strand, within MPMX20_01633at 1723.462 kb on + strand, within MPMX20_01633at 1723.477 kb on - strand, within MPMX20_01633at 1723.501 kb on + strand, within MPMX20_01633at 1723.501 kb on + strand, within MPMX20_01633at 1723.502 kb on - strand, within MPMX20_01633at 1723.509 kb on - strand, within MPMX20_01633at 1723.596 kb on + strand, within MPMX20_01633at 1723.604 kb on - strand, within MPMX20_01633at 1723.637 kb on + strand, within MPMX20_01633at 1723.637 kb on + strand, within MPMX20_01633at 1723.640 kb on + strand, within MPMX20_01633at 1723.652 kb on + strand, within MPMX20_01633at 1723.652 kb on + strand, within MPMX20_01633at 1723.660 kb on - strand, within MPMX20_01633at 1723.720 kb on + strand, within MPMX20_01633at 1723.861 kb on + strand, within MPMX20_01633at 1723.876 kb on + strand, within MPMX20_01633at 1723.876 kb on + strand, within MPMX20_01633at 1723.879 kb on - strand, within MPMX20_01633at 1723.884 kb on + strand, within MPMX20_01633at 1723.923 kb on + strand, within MPMX20_01633at 1723.947 kb on + strand, within MPMX20_01633

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,721,481 - MPMX20_01631 0.42 +0.0
1,721,505 - MPMX20_01631 0.43 -0.3
1,721,562 + MPMX20_01631 0.47 -0.4
1,721,589 + MPMX20_01631 0.48 -0.9
1,721,614 - MPMX20_01631 0.50 +1.1
1,721,699 - MPMX20_01631 0.55 +1.3
1,721,716 + MPMX20_01631 0.56 -0.6
1,721,732 - MPMX20_01631 0.57 -0.6
1,721,764 - MPMX20_01631 0.59 -1.8
1,721,934 - MPMX20_01631 0.69 -1.2
1,721,978 + MPMX20_01631 0.72 +0.4
1,721,986 - MPMX20_01631 0.72 +0.5
1,722,104 - MPMX20_01631 0.79 -1.8
1,722,127 - MPMX20_01631 0.80 -0.2
1,722,184 + MPMX20_01631 0.84 +0.3
1,722,184 + MPMX20_01631 0.84 -1.0
1,722,193 - MPMX20_01631 0.84 -0.9
1,722,203 - MPMX20_01631 0.85 -1.0
1,722,205 + MPMX20_01631 0.85 -0.1
1,722,208 - MPMX20_01631 0.85 -1.0
1,722,213 - MPMX20_01631 0.86 +1.8
1,722,250 - MPMX20_01631 0.88 -0.7
1,722,261 - MPMX20_01631 0.88 -1.0
1,722,272 - MPMX20_01631 0.89 -0.9
1,722,279 + MPMX20_01631 0.89 -0.7
1,722,287 - MPMX20_01631 0.90 -2.0
1,722,292 - -1.4
1,722,349 - +1.0
1,722,356 + -0.5
1,722,382 - -1.4
1,722,388 - +1.3
1,722,422 - +0.0
1,722,505 + -0.5
1,722,562 + MPMX20_01632 0.21 -1.1
1,722,572 + MPMX20_01632 0.23 -0.1
1,722,572 + MPMX20_01632 0.23 -1.2
1,722,572 + MPMX20_01632 0.23 -0.3
1,722,581 - MPMX20_01632 0.25 -0.5
1,722,604 + MPMX20_01632 0.30 -0.7
1,722,635 - MPMX20_01632 0.36 -0.2
1,722,673 + MPMX20_01632 0.44 -1.7
1,722,673 + MPMX20_01632 0.44 +0.0
1,722,673 + MPMX20_01632 0.44 -0.9
1,722,673 + MPMX20_01632 0.44 +0.4
1,722,698 + MPMX20_01632 0.49 -0.9
1,722,698 + MPMX20_01632 0.49 +0.4
1,722,715 + MPMX20_01632 0.52 -1.2
1,722,715 + MPMX20_01632 0.52 -0.9
1,722,721 - MPMX20_01632 0.53 -1.0
1,722,760 - MPMX20_01632 0.61 -1.1
1,722,781 + MPMX20_01632 0.66 -0.9
1,722,840 + MPMX20_01632 0.78 +0.4
1,722,849 + MPMX20_01632 0.79 -1.1
1,722,849 + MPMX20_01632 0.79 -0.2
1,722,857 - MPMX20_01632 0.81 +0.7
1,722,857 - MPMX20_01632 0.81 -2.4
1,722,857 - MPMX20_01632 0.81 -1.9
1,722,891 - MPMX20_01632 0.88 -1.1
1,722,899 - MPMX20_01632 0.90 -0.2
1,722,940 - -1.2
1,722,964 + +0.4
1,722,990 + +0.3
1,723,008 - +0.3
1,723,020 + +1.0
1,723,061 - -0.4
1,723,079 + +1.4
1,723,152 - +2.3
1,723,174 - -3.0
1,723,185 + -1.7
1,723,185 + +1.5
1,723,220 + -0.1
1,723,231 - +3.4
1,723,255 - -0.7
1,723,260 - -0.9
1,723,279 - -1.5
1,723,295 + +8.8
1,723,319 + +0.0
1,723,319 + +0.5
1,723,327 - +0.4
1,723,327 - -0.8
1,723,327 - +0.5
1,723,327 - -1.0
1,723,350 - -0.5
1,723,350 - +0.2
1,723,382 + MPMX20_01633 0.10 +0.8
1,723,390 - MPMX20_01633 0.10 -0.2
1,723,390 - MPMX20_01633 0.10 +0.7
1,723,402 + MPMX20_01633 0.11 +1.1
1,723,410 - MPMX20_01633 0.11 -0.7
1,723,462 + MPMX20_01633 0.13 -0.0
1,723,477 - MPMX20_01633 0.14 -0.3
1,723,501 + MPMX20_01633 0.15 +0.3
1,723,501 + MPMX20_01633 0.15 -0.6
1,723,502 - MPMX20_01633 0.15 +1.3
1,723,509 - MPMX20_01633 0.15 +0.7
1,723,596 + MPMX20_01633 0.18 +0.4
1,723,604 - MPMX20_01633 0.18 +1.2
1,723,637 + MPMX20_01633 0.20 -0.9
1,723,637 + MPMX20_01633 0.20 -0.3
1,723,640 + MPMX20_01633 0.20 -0.5
1,723,652 + MPMX20_01633 0.20 -0.6
1,723,652 + MPMX20_01633 0.20 -0.6
1,723,660 - MPMX20_01633 0.21 -1.2
1,723,720 + MPMX20_01633 0.23 -0.5
1,723,861 + MPMX20_01633 0.28 +1.5
1,723,876 + MPMX20_01633 0.29 -1.4
1,723,876 + MPMX20_01633 0.29 -1.2
1,723,879 - MPMX20_01633 0.29 -0.6
1,723,884 + MPMX20_01633 0.29 -3.2
1,723,923 + MPMX20_01633 0.30 +0.7
1,723,947 + MPMX20_01633 0.31 -0.9

Or see this region's nucleotide sequence