Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01613

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01612 and MPMX20_01613 are separated by 59 nucleotidesMPMX20_01613 and MPMX20_01614 are separated by 80 nucleotidesMPMX20_01614 and MPMX20_01615 are separated by 25 nucleotides MPMX20_01612: MPMX20_01612 - DNA helicase IV, at 1,704,798 to 1,706,852 _01612 MPMX20_01613: MPMX20_01613 - Methylglyoxal synthase, at 1,706,912 to 1,707,370 _01613 MPMX20_01614: MPMX20_01614 - hypothetical protein, at 1,707,451 to 1,708,260 _01614 MPMX20_01615: MPMX20_01615 - putative protein YccU, at 1,708,286 to 1,708,702 _01615 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1705.961 kb on + strand, within MPMX20_01612at 1705.968 kb on - strand, within MPMX20_01612at 1706.012 kb on + strand, within MPMX20_01612at 1706.035 kb on + strand, within MPMX20_01612at 1706.159 kb on - strand, within MPMX20_01612at 1706.227 kb on - strand, within MPMX20_01612at 1706.263 kb on + strand, within MPMX20_01612at 1706.351 kb on - strand, within MPMX20_01612at 1706.392 kb on - strand, within MPMX20_01612at 1706.440 kb on - strand, within MPMX20_01612at 1706.518 kb on - strand, within MPMX20_01612at 1706.623 kb on + strand, within MPMX20_01612at 1706.623 kb on + strand, within MPMX20_01612at 1706.750 kb on - strandat 1706.750 kb on - strandat 1706.829 kb on - strandat 1706.855 kb on + strandat 1706.972 kb on + strand, within MPMX20_01613at 1706.980 kb on - strand, within MPMX20_01613at 1707.040 kb on - strand, within MPMX20_01613at 1707.053 kb on + strand, within MPMX20_01613at 1707.053 kb on + strand, within MPMX20_01613at 1707.053 kb on + strand, within MPMX20_01613at 1707.067 kb on + strand, within MPMX20_01613at 1707.067 kb on - strand, within MPMX20_01613at 1707.194 kb on + strand, within MPMX20_01613at 1707.194 kb on - strand, within MPMX20_01613at 1707.220 kb on + strand, within MPMX20_01613at 1707.220 kb on + strand, within MPMX20_01613at 1707.239 kb on + strand, within MPMX20_01613at 1707.293 kb on - strand, within MPMX20_01613at 1707.329 kb on - strandat 1707.385 kb on + strandat 1707.393 kb on - strandat 1707.468 kb on + strandat 1707.476 kb on - strandat 1707.602 kb on - strand, within MPMX20_01614at 1707.628 kb on + strand, within MPMX20_01614at 1707.643 kb on + strand, within MPMX20_01614at 1707.709 kb on - strand, within MPMX20_01614at 1707.712 kb on + strand, within MPMX20_01614at 1707.770 kb on - strand, within MPMX20_01614at 1707.779 kb on + strand, within MPMX20_01614at 1707.827 kb on + strand, within MPMX20_01614at 1707.827 kb on + strand, within MPMX20_01614at 1707.835 kb on - strand, within MPMX20_01614at 1707.851 kb on + strand, within MPMX20_01614at 1707.878 kb on + strand, within MPMX20_01614at 1707.902 kb on - strand, within MPMX20_01614at 1707.951 kb on - strand, within MPMX20_01614at 1708.041 kb on + strand, within MPMX20_01614at 1708.191 kb on - strandat 1708.210 kb on - strandat 1708.255 kb on - strandat 1708.302 kb on - strandat 1708.347 kb on - strand, within MPMX20_01615

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,705,961 + MPMX20_01612 0.57 -0.6
1,705,968 - MPMX20_01612 0.57 +0.3
1,706,012 + MPMX20_01612 0.59 -0.7
1,706,035 + MPMX20_01612 0.60 -1.5
1,706,159 - MPMX20_01612 0.66 +0.3
1,706,227 - MPMX20_01612 0.70 -0.5
1,706,263 + MPMX20_01612 0.71 +1.3
1,706,351 - MPMX20_01612 0.76 -0.5
1,706,392 - MPMX20_01612 0.78 -1.4
1,706,440 - MPMX20_01612 0.80 -0.7
1,706,518 - MPMX20_01612 0.84 -0.2
1,706,623 + MPMX20_01612 0.89 +1.1
1,706,623 + MPMX20_01612 0.89 -0.3
1,706,750 - +2.8
1,706,750 - +0.6
1,706,829 - -0.3
1,706,855 + +1.0
1,706,972 + MPMX20_01613 0.13 -0.3
1,706,980 - MPMX20_01613 0.15 -0.2
1,707,040 - MPMX20_01613 0.28 +0.6
1,707,053 + MPMX20_01613 0.31 -0.9
1,707,053 + MPMX20_01613 0.31 -0.6
1,707,053 + MPMX20_01613 0.31 +1.8
1,707,067 + MPMX20_01613 0.34 +1.4
1,707,067 - MPMX20_01613 0.34 +0.5
1,707,194 + MPMX20_01613 0.61 +0.1
1,707,194 - MPMX20_01613 0.61 -1.5
1,707,220 + MPMX20_01613 0.67 -1.2
1,707,220 + MPMX20_01613 0.67 -0.4
1,707,239 + MPMX20_01613 0.71 +4.1
1,707,293 - MPMX20_01613 0.83 +0.3
1,707,329 - -2.0
1,707,385 + -1.8
1,707,393 - +0.3
1,707,468 + -0.5
1,707,476 - +0.6
1,707,602 - MPMX20_01614 0.19 -1.6
1,707,628 + MPMX20_01614 0.22 +1.1
1,707,643 + MPMX20_01614 0.24 +0.0
1,707,709 - MPMX20_01614 0.32 -0.3
1,707,712 + MPMX20_01614 0.32 +0.3
1,707,770 - MPMX20_01614 0.39 +0.6
1,707,779 + MPMX20_01614 0.40 -0.5
1,707,827 + MPMX20_01614 0.46 -0.3
1,707,827 + MPMX20_01614 0.46 -0.7
1,707,835 - MPMX20_01614 0.47 -1.3
1,707,851 + MPMX20_01614 0.49 -1.0
1,707,878 + MPMX20_01614 0.53 -1.1
1,707,902 - MPMX20_01614 0.56 -1.4
1,707,951 - MPMX20_01614 0.62 -1.1
1,708,041 + MPMX20_01614 0.73 +0.3
1,708,191 - +0.3
1,708,210 - -0.3
1,708,255 - +1.0
1,708,302 - +0.5
1,708,347 - MPMX20_01615 0.15 -1.0

Or see this region's nucleotide sequence