Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01400 and MPMX20_01401 are separated by 42 nucleotides MPMX20_01401 and MPMX20_01402 are separated by 72 nucleotides
MPMX20_01400: MPMX20_01400 - Histidine ammonia-lyase, at 1,463,150 to 1,464,670
_01400
MPMX20_01401: MPMX20_01401 - hypothetical protein, at 1,464,713 to 1,465,189
_01401
MPMX20_01402: MPMX20_01402 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 1,465,262 to 1,466,569
_01402
Position (kb)
1464
1465
1466 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1463.721 kb on + strand, within MPMX20_01400 at 1463.731 kb on + strand, within MPMX20_01400 at 1463.739 kb on - strand, within MPMX20_01400 at 1463.749 kb on - strand, within MPMX20_01400 at 1463.776 kb on + strand, within MPMX20_01400 at 1463.807 kb on + strand, within MPMX20_01400 at 1463.809 kb on + strand, within MPMX20_01400 at 1463.879 kb on - strand, within MPMX20_01400 at 1463.978 kb on + strand, within MPMX20_01400 at 1464.016 kb on + strand, within MPMX20_01400 at 1464.016 kb on - strand, within MPMX20_01400 at 1464.021 kb on - strand, within MPMX20_01400 at 1464.021 kb on - strand, within MPMX20_01400 at 1464.024 kb on - strand, within MPMX20_01400 at 1464.027 kb on + strand, within MPMX20_01400 at 1464.080 kb on - strand, within MPMX20_01400 at 1464.204 kb on + strand, within MPMX20_01400 at 1464.212 kb on - strand, within MPMX20_01400 at 1464.307 kb on + strand, within MPMX20_01400 at 1464.350 kb on + strand, within MPMX20_01400 at 1464.350 kb on + strand, within MPMX20_01400 at 1464.350 kb on + strand, within MPMX20_01400 at 1464.396 kb on - strand, within MPMX20_01400 at 1464.495 kb on + strand, within MPMX20_01400 at 1464.495 kb on + strand, within MPMX20_01400 at 1464.503 kb on - strand, within MPMX20_01400 at 1464.503 kb on - strand, within MPMX20_01400 at 1464.503 kb on - strand, within MPMX20_01400 at 1464.512 kb on + strand, within MPMX20_01400 at 1464.527 kb on - strand at 1464.527 kb on - strand at 1464.530 kb on + strand at 1464.642 kb on - strand at 1464.697 kb on - strand at 1464.792 kb on + strand, within MPMX20_01401 at 1464.879 kb on + strand, within MPMX20_01401 at 1464.886 kb on - strand, within MPMX20_01401 at 1464.908 kb on + strand, within MPMX20_01401 at 1464.908 kb on + strand, within MPMX20_01401 at 1464.908 kb on + strand, within MPMX20_01401 at 1464.916 kb on - strand, within MPMX20_01401 at 1464.916 kb on - strand, within MPMX20_01401 at 1464.929 kb on - strand, within MPMX20_01401 at 1464.929 kb on - strand, within MPMX20_01401 at 1464.940 kb on + strand, within MPMX20_01401 at 1464.954 kb on - strand, within MPMX20_01401 at 1464.989 kb on - strand, within MPMX20_01401 at 1464.996 kb on + strand, within MPMX20_01401 at 1464.999 kb on - strand, within MPMX20_01401 at 1465.004 kb on - strand, within MPMX20_01401 at 1465.004 kb on - strand, within MPMX20_01401 at 1465.009 kb on + strand, within MPMX20_01401 at 1465.012 kb on - strand, within MPMX20_01401 at 1465.017 kb on - strand, within MPMX20_01401 at 1465.033 kb on + strand, within MPMX20_01401 at 1465.043 kb on + strand, within MPMX20_01401 at 1465.048 kb on + strand, within MPMX20_01401 at 1465.100 kb on + strand, within MPMX20_01401 at 1465.240 kb on + strand at 1465.247 kb on + strand at 1465.259 kb on + strand at 1465.259 kb on + strand at 1465.259 kb on + strand at 1465.267 kb on - strand at 1465.267 kb on - strand at 1465.291 kb on - strand at 1465.301 kb on - strand at 1465.316 kb on - strand at 1465.390 kb on - strand at 1465.557 kb on - strand, within MPMX20_01402 at 1465.594 kb on + strand, within MPMX20_01402 at 1465.606 kb on + strand, within MPMX20_01402 at 1465.612 kb on - strand, within MPMX20_01402 at 1465.693 kb on + strand, within MPMX20_01402 at 1465.716 kb on - strand, within MPMX20_01402 at 1465.775 kb on + strand, within MPMX20_01402 at 1465.783 kb on - strand, within MPMX20_01402 at 1465.907 kb on - strand, within MPMX20_01402 at 1465.961 kb on - strand, within MPMX20_01402 at 1465.964 kb on - strand, within MPMX20_01402 at 1465.964 kb on - strand, within MPMX20_01402 at 1465.964 kb on - strand, within MPMX20_01402 at 1465.964 kb on - strand, within MPMX20_01402 at 1465.990 kb on - strand, within MPMX20_01402 at 1466.036 kb on - strand, within MPMX20_01402 at 1466.056 kb on + strand, within MPMX20_01402 at 1466.081 kb on - strand, within MPMX20_01402 at 1466.098 kb on - strand, within MPMX20_01402 at 1466.104 kb on - strand, within MPMX20_01402 at 1466.161 kb on - strand, within MPMX20_01402 at 1466.180 kb on - strand, within MPMX20_01402
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,463,721 + MPMX20_01400 0.38 -1.1 1,463,731 + MPMX20_01400 0.38 -0.3 1,463,739 - MPMX20_01400 0.39 +0.3 1,463,749 - MPMX20_01400 0.39 -1.8 1,463,776 + MPMX20_01400 0.41 +1.8 1,463,807 + MPMX20_01400 0.43 -0.9 1,463,809 + MPMX20_01400 0.43 -1.9 1,463,879 - MPMX20_01400 0.48 +1.8 1,463,978 + MPMX20_01400 0.54 -0.7 1,464,016 + MPMX20_01400 0.57 -0.4 1,464,016 - MPMX20_01400 0.57 -0.3 1,464,021 - MPMX20_01400 0.57 +0.2 1,464,021 - MPMX20_01400 0.57 -1.3 1,464,024 - MPMX20_01400 0.57 +0.8 1,464,027 + MPMX20_01400 0.58 +1.2 1,464,080 - MPMX20_01400 0.61 -0.2 1,464,204 + MPMX20_01400 0.69 -2.6 1,464,212 - MPMX20_01400 0.70 -2.5 1,464,307 + MPMX20_01400 0.76 -1.8 1,464,350 + MPMX20_01400 0.79 +0.1 1,464,350 + MPMX20_01400 0.79 -0.3 1,464,350 + MPMX20_01400 0.79 +0.3 1,464,396 - MPMX20_01400 0.82 +0.7 1,464,495 + MPMX20_01400 0.88 +0.8 1,464,495 + MPMX20_01400 0.88 -0.8 1,464,503 - MPMX20_01400 0.89 -1.1 1,464,503 - MPMX20_01400 0.89 -0.2 1,464,503 - MPMX20_01400 0.89 +0.5 1,464,512 + MPMX20_01400 0.90 +0.2 1,464,527 - +0.8 1,464,527 - -0.9 1,464,530 + -0.5 1,464,642 - -1.1 1,464,697 - -2.6 1,464,792 + MPMX20_01401 0.17 +1.1 1,464,879 + MPMX20_01401 0.35 +0.2 1,464,886 - MPMX20_01401 0.36 -2.6 1,464,908 + MPMX20_01401 0.41 +2.8 1,464,908 + MPMX20_01401 0.41 -2.2 1,464,908 + MPMX20_01401 0.41 -0.8 1,464,916 - MPMX20_01401 0.43 -0.9 1,464,916 - MPMX20_01401 0.43 +0.5 1,464,929 - MPMX20_01401 0.45 -1.2 1,464,929 - MPMX20_01401 0.45 +0.5 1,464,940 + MPMX20_01401 0.48 -1.0 1,464,954 - MPMX20_01401 0.51 -0.4 1,464,989 - MPMX20_01401 0.58 -0.7 1,464,996 + MPMX20_01401 0.59 -0.4 1,464,999 - MPMX20_01401 0.60 -1.4 1,465,004 - MPMX20_01401 0.61 +0.0 1,465,004 - MPMX20_01401 0.61 +0.8 1,465,009 + MPMX20_01401 0.62 -0.8 1,465,012 - MPMX20_01401 0.63 -1.2 1,465,017 - MPMX20_01401 0.64 -1.1 1,465,033 + MPMX20_01401 0.67 -0.2 1,465,043 + MPMX20_01401 0.69 -0.7 1,465,048 + MPMX20_01401 0.70 -2.3 1,465,100 + MPMX20_01401 0.81 +0.5 1,465,240 + +1.4 1,465,247 + +0.6 1,465,259 + -1.8 1,465,259 + -0.8 1,465,259 + -1.2 1,465,267 - -1.0 1,465,267 - -1.9 1,465,291 - +1.2 1,465,301 - -1.1 1,465,316 - +1.8 1,465,390 - +2.2 1,465,557 - MPMX20_01402 0.23 -0.7 1,465,594 + MPMX20_01402 0.25 -0.3 1,465,606 + MPMX20_01402 0.26 -1.0 1,465,612 - MPMX20_01402 0.27 -2.7 1,465,693 + MPMX20_01402 0.33 +1.5 1,465,716 - MPMX20_01402 0.35 -0.6 1,465,775 + MPMX20_01402 0.39 +0.8 1,465,783 - MPMX20_01402 0.40 -0.6 1,465,907 - MPMX20_01402 0.49 -0.4 1,465,961 - MPMX20_01402 0.53 -0.7 1,465,964 - MPMX20_01402 0.54 -0.4 1,465,964 - MPMX20_01402 0.54 +0.5 1,465,964 - MPMX20_01402 0.54 -0.8 1,465,964 - MPMX20_01402 0.54 -2.6 1,465,990 - MPMX20_01402 0.56 +0.2 1,466,036 - MPMX20_01402 0.59 +1.5 1,466,056 + MPMX20_01402 0.61 +1.5 1,466,081 - MPMX20_01402 0.63 -1.1 1,466,098 - MPMX20_01402 0.64 +0.2 1,466,104 - MPMX20_01402 0.64 +1.3 1,466,161 - MPMX20_01402 0.69 -0.8 1,466,180 - MPMX20_01402 0.70 -0.6
Or see this region's nucleotide sequence