Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01240

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01239 and MPMX20_01240 are separated by 10 nucleotidesMPMX20_01240 and MPMX20_01241 overlap by 4 nucleotides MPMX20_01239: MPMX20_01239 - Enterochelin esterase, at 1,300,153 to 1,301,541 _01239 MPMX20_01240: MPMX20_01240 - Enterobactin biosynthesis protein YbdZ, at 1,301,552 to 1,301,764 _01240 MPMX20_01241: MPMX20_01241 - Enterobactin synthase component F, at 1,301,761 to 1,305,618 _01241 Position (kb) 1301 1302Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1300.654 kb on + strand, within MPMX20_01239at 1300.662 kb on - strand, within MPMX20_01239at 1300.679 kb on - strand, within MPMX20_01239at 1300.687 kb on - strand, within MPMX20_01239at 1300.689 kb on + strand, within MPMX20_01239at 1300.721 kb on - strand, within MPMX20_01239at 1300.746 kb on + strand, within MPMX20_01239at 1300.821 kb on - strand, within MPMX20_01239at 1300.856 kb on - strand, within MPMX20_01239at 1300.912 kb on + strand, within MPMX20_01239at 1300.920 kb on - strand, within MPMX20_01239at 1300.959 kb on + strand, within MPMX20_01239at 1300.959 kb on + strand, within MPMX20_01239at 1300.967 kb on - strand, within MPMX20_01239at 1301.012 kb on - strand, within MPMX20_01239at 1301.057 kb on + strand, within MPMX20_01239at 1301.065 kb on - strand, within MPMX20_01239at 1301.067 kb on + strand, within MPMX20_01239at 1301.072 kb on + strand, within MPMX20_01239at 1301.075 kb on - strand, within MPMX20_01239at 1301.176 kb on + strand, within MPMX20_01239at 1301.185 kb on + strand, within MPMX20_01239at 1301.185 kb on + strand, within MPMX20_01239at 1301.185 kb on + strand, within MPMX20_01239at 1301.193 kb on - strand, within MPMX20_01239at 1301.193 kb on - strand, within MPMX20_01239at 1301.205 kb on + strand, within MPMX20_01239at 1301.221 kb on + strand, within MPMX20_01239at 1301.231 kb on + strand, within MPMX20_01239at 1301.239 kb on - strand, within MPMX20_01239at 1301.260 kb on - strand, within MPMX20_01239at 1301.260 kb on - strand, within MPMX20_01239at 1301.260 kb on - strand, within MPMX20_01239at 1301.262 kb on + strand, within MPMX20_01239at 1301.494 kb on + strandat 1301.558 kb on - strandat 1301.620 kb on + strand, within MPMX20_01240at 1301.623 kb on - strand, within MPMX20_01240at 1301.623 kb on - strand, within MPMX20_01240at 1301.628 kb on - strand, within MPMX20_01240at 1301.683 kb on + strand, within MPMX20_01240at 1301.702 kb on - strand, within MPMX20_01240at 1301.721 kb on + strand, within MPMX20_01240at 1301.768 kb on + strandat 1301.840 kb on + strandat 1301.840 kb on - strandat 1301.840 kb on - strandat 1301.845 kb on + strandat 1301.847 kb on + strandat 1301.847 kb on + strandat 1301.847 kb on + strandat 1301.855 kb on - strandat 1301.855 kb on - strandat 1301.855 kb on - strandat 1301.860 kb on - strandat 1301.865 kb on + strandat 1301.962 kb on + strandat 1302.140 kb on + strandat 1302.143 kb on - strandat 1302.152 kb on + strand, within MPMX20_01241at 1302.273 kb on + strand, within MPMX20_01241at 1302.335 kb on + strand, within MPMX20_01241at 1302.375 kb on - strand, within MPMX20_01241at 1302.396 kb on - strand, within MPMX20_01241at 1302.396 kb on - strand, within MPMX20_01241at 1302.398 kb on - strand, within MPMX20_01241at 1302.501 kb on - strand, within MPMX20_01241at 1302.584 kb on + strand, within MPMX20_01241at 1302.649 kb on - strand, within MPMX20_01241at 1302.660 kb on - strand, within MPMX20_01241at 1302.728 kb on - strand, within MPMX20_01241

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,300,654 + MPMX20_01239 0.36 -0.9
1,300,662 - MPMX20_01239 0.37 -2.0
1,300,679 - MPMX20_01239 0.38 -2.1
1,300,687 - MPMX20_01239 0.38 -0.7
1,300,689 + MPMX20_01239 0.39 -0.9
1,300,721 - MPMX20_01239 0.41 -1.7
1,300,746 + MPMX20_01239 0.43 -0.9
1,300,821 - MPMX20_01239 0.48 +1.2
1,300,856 - MPMX20_01239 0.51 -1.3
1,300,912 + MPMX20_01239 0.55 -0.7
1,300,920 - MPMX20_01239 0.55 -1.5
1,300,959 + MPMX20_01239 0.58 +0.5
1,300,959 + MPMX20_01239 0.58 -2.7
1,300,967 - MPMX20_01239 0.59 -0.2
1,301,012 - MPMX20_01239 0.62 -0.5
1,301,057 + MPMX20_01239 0.65 -0.4
1,301,065 - MPMX20_01239 0.66 -1.5
1,301,067 + MPMX20_01239 0.66 -1.0
1,301,072 + MPMX20_01239 0.66 -0.8
1,301,075 - MPMX20_01239 0.66 -1.4
1,301,176 + MPMX20_01239 0.74 -0.7
1,301,185 + MPMX20_01239 0.74 -2.5
1,301,185 + MPMX20_01239 0.74 -1.4
1,301,185 + MPMX20_01239 0.74 -1.9
1,301,193 - MPMX20_01239 0.75 +0.2
1,301,193 - MPMX20_01239 0.75 -0.2
1,301,205 + MPMX20_01239 0.76 -1.3
1,301,221 + MPMX20_01239 0.77 -0.2
1,301,231 + MPMX20_01239 0.78 +0.8
1,301,239 - MPMX20_01239 0.78 -2.6
1,301,260 - MPMX20_01239 0.80 -1.6
1,301,260 - MPMX20_01239 0.80 +0.9
1,301,260 - MPMX20_01239 0.80 -2.0
1,301,262 + MPMX20_01239 0.80 +0.9
1,301,494 + +0.5
1,301,558 - -1.2
1,301,620 + MPMX20_01240 0.32 -0.9
1,301,623 - MPMX20_01240 0.33 -0.6
1,301,623 - MPMX20_01240 0.33 -1.1
1,301,628 - MPMX20_01240 0.36 -1.7
1,301,683 + MPMX20_01240 0.62 -1.1
1,301,702 - MPMX20_01240 0.70 -2.4
1,301,721 + MPMX20_01240 0.79 -1.6
1,301,768 + -0.1
1,301,840 + -1.6
1,301,840 - +0.5
1,301,840 - -1.7
1,301,845 + -0.3
1,301,847 + +0.1
1,301,847 + -2.7
1,301,847 + +1.8
1,301,855 - +0.2
1,301,855 - +0.1
1,301,855 - -0.7
1,301,860 - -0.1
1,301,865 + +1.2
1,301,962 + -1.8
1,302,140 + -1.1
1,302,143 - +1.3
1,302,152 + MPMX20_01241 0.10 +0.3
1,302,273 + MPMX20_01241 0.13 -0.6
1,302,335 + MPMX20_01241 0.15 -1.7
1,302,375 - MPMX20_01241 0.16 -0.7
1,302,396 - MPMX20_01241 0.16 -0.8
1,302,396 - MPMX20_01241 0.16 +0.5
1,302,398 - MPMX20_01241 0.17 -0.5
1,302,501 - MPMX20_01241 0.19 -1.3
1,302,584 + MPMX20_01241 0.21 -1.1
1,302,649 - MPMX20_01241 0.23 +3.5
1,302,660 - MPMX20_01241 0.23 +0.5
1,302,728 - MPMX20_01241 0.25 -0.7

Or see this region's nucleotide sequence