Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01239 and MPMX20_01240 are separated by 10 nucleotides MPMX20_01240 and MPMX20_01241 overlap by 4 nucleotides
MPMX20_01239: MPMX20_01239 - Enterochelin esterase, at 1,300,153 to 1,301,541
_01239
MPMX20_01240: MPMX20_01240 - Enterobactin biosynthesis protein YbdZ, at 1,301,552 to 1,301,764
_01240
MPMX20_01241: MPMX20_01241 - Enterobactin synthase component F, at 1,301,761 to 1,305,618
_01241
Position (kb)
1301
1302 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1300.654 kb on + strand, within MPMX20_01239 at 1300.662 kb on - strand, within MPMX20_01239 at 1300.679 kb on - strand, within MPMX20_01239 at 1300.687 kb on - strand, within MPMX20_01239 at 1300.689 kb on + strand, within MPMX20_01239 at 1300.721 kb on - strand, within MPMX20_01239 at 1300.746 kb on + strand, within MPMX20_01239 at 1300.821 kb on - strand, within MPMX20_01239 at 1300.856 kb on - strand, within MPMX20_01239 at 1300.912 kb on + strand, within MPMX20_01239 at 1300.920 kb on - strand, within MPMX20_01239 at 1300.959 kb on + strand, within MPMX20_01239 at 1300.959 kb on + strand, within MPMX20_01239 at 1300.967 kb on - strand, within MPMX20_01239 at 1301.012 kb on - strand, within MPMX20_01239 at 1301.057 kb on + strand, within MPMX20_01239 at 1301.065 kb on - strand, within MPMX20_01239 at 1301.067 kb on + strand, within MPMX20_01239 at 1301.072 kb on + strand, within MPMX20_01239 at 1301.075 kb on - strand, within MPMX20_01239 at 1301.176 kb on + strand, within MPMX20_01239 at 1301.185 kb on + strand, within MPMX20_01239 at 1301.185 kb on + strand, within MPMX20_01239 at 1301.185 kb on + strand, within MPMX20_01239 at 1301.193 kb on - strand, within MPMX20_01239 at 1301.193 kb on - strand, within MPMX20_01239 at 1301.205 kb on + strand, within MPMX20_01239 at 1301.221 kb on + strand, within MPMX20_01239 at 1301.231 kb on + strand, within MPMX20_01239 at 1301.239 kb on - strand, within MPMX20_01239 at 1301.260 kb on - strand, within MPMX20_01239 at 1301.260 kb on - strand, within MPMX20_01239 at 1301.260 kb on - strand, within MPMX20_01239 at 1301.262 kb on + strand, within MPMX20_01239 at 1301.494 kb on + strand at 1301.558 kb on - strand at 1301.620 kb on + strand, within MPMX20_01240 at 1301.623 kb on - strand, within MPMX20_01240 at 1301.623 kb on - strand, within MPMX20_01240 at 1301.628 kb on - strand, within MPMX20_01240 at 1301.683 kb on + strand, within MPMX20_01240 at 1301.702 kb on - strand, within MPMX20_01240 at 1301.721 kb on + strand, within MPMX20_01240 at 1301.768 kb on + strand at 1301.840 kb on + strand at 1301.840 kb on - strand at 1301.840 kb on - strand at 1301.845 kb on + strand at 1301.847 kb on + strand at 1301.847 kb on + strand at 1301.847 kb on + strand at 1301.855 kb on - strand at 1301.855 kb on - strand at 1301.855 kb on - strand at 1301.860 kb on - strand at 1301.865 kb on + strand at 1301.962 kb on + strand at 1302.140 kb on + strand at 1302.143 kb on - strand at 1302.152 kb on + strand, within MPMX20_01241 at 1302.273 kb on + strand, within MPMX20_01241 at 1302.335 kb on + strand, within MPMX20_01241 at 1302.375 kb on - strand, within MPMX20_01241 at 1302.396 kb on - strand, within MPMX20_01241 at 1302.396 kb on - strand, within MPMX20_01241 at 1302.398 kb on - strand, within MPMX20_01241 at 1302.501 kb on - strand, within MPMX20_01241 at 1302.584 kb on + strand, within MPMX20_01241 at 1302.649 kb on - strand, within MPMX20_01241 at 1302.660 kb on - strand, within MPMX20_01241 at 1302.728 kb on - strand, within MPMX20_01241
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,300,654 + MPMX20_01239 0.36 -0.9 1,300,662 - MPMX20_01239 0.37 -2.0 1,300,679 - MPMX20_01239 0.38 -2.1 1,300,687 - MPMX20_01239 0.38 -0.7 1,300,689 + MPMX20_01239 0.39 -0.9 1,300,721 - MPMX20_01239 0.41 -1.7 1,300,746 + MPMX20_01239 0.43 -0.9 1,300,821 - MPMX20_01239 0.48 +1.2 1,300,856 - MPMX20_01239 0.51 -1.3 1,300,912 + MPMX20_01239 0.55 -0.7 1,300,920 - MPMX20_01239 0.55 -1.5 1,300,959 + MPMX20_01239 0.58 +0.5 1,300,959 + MPMX20_01239 0.58 -2.7 1,300,967 - MPMX20_01239 0.59 -0.2 1,301,012 - MPMX20_01239 0.62 -0.5 1,301,057 + MPMX20_01239 0.65 -0.4 1,301,065 - MPMX20_01239 0.66 -1.5 1,301,067 + MPMX20_01239 0.66 -1.0 1,301,072 + MPMX20_01239 0.66 -0.8 1,301,075 - MPMX20_01239 0.66 -1.4 1,301,176 + MPMX20_01239 0.74 -0.7 1,301,185 + MPMX20_01239 0.74 -2.5 1,301,185 + MPMX20_01239 0.74 -1.4 1,301,185 + MPMX20_01239 0.74 -1.9 1,301,193 - MPMX20_01239 0.75 +0.2 1,301,193 - MPMX20_01239 0.75 -0.2 1,301,205 + MPMX20_01239 0.76 -1.3 1,301,221 + MPMX20_01239 0.77 -0.2 1,301,231 + MPMX20_01239 0.78 +0.8 1,301,239 - MPMX20_01239 0.78 -2.6 1,301,260 - MPMX20_01239 0.80 -1.6 1,301,260 - MPMX20_01239 0.80 +0.9 1,301,260 - MPMX20_01239 0.80 -2.0 1,301,262 + MPMX20_01239 0.80 +0.9 1,301,494 + +0.5 1,301,558 - -1.2 1,301,620 + MPMX20_01240 0.32 -0.9 1,301,623 - MPMX20_01240 0.33 -0.6 1,301,623 - MPMX20_01240 0.33 -1.1 1,301,628 - MPMX20_01240 0.36 -1.7 1,301,683 + MPMX20_01240 0.62 -1.1 1,301,702 - MPMX20_01240 0.70 -2.4 1,301,721 + MPMX20_01240 0.79 -1.6 1,301,768 + -0.1 1,301,840 + -1.6 1,301,840 - +0.5 1,301,840 - -1.7 1,301,845 + -0.3 1,301,847 + +0.1 1,301,847 + -2.7 1,301,847 + +1.8 1,301,855 - +0.2 1,301,855 - +0.1 1,301,855 - -0.7 1,301,860 - -0.1 1,301,865 + +1.2 1,301,962 + -1.8 1,302,140 + -1.1 1,302,143 - +1.3 1,302,152 + MPMX20_01241 0.10 +0.3 1,302,273 + MPMX20_01241 0.13 -0.6 1,302,335 + MPMX20_01241 0.15 -1.7 1,302,375 - MPMX20_01241 0.16 -0.7 1,302,396 - MPMX20_01241 0.16 -0.8 1,302,396 - MPMX20_01241 0.16 +0.5 1,302,398 - MPMX20_01241 0.17 -0.5 1,302,501 - MPMX20_01241 0.19 -1.3 1,302,584 + MPMX20_01241 0.21 -1.1 1,302,649 - MPMX20_01241 0.23 +3.5 1,302,660 - MPMX20_01241 0.23 +0.5 1,302,728 - MPMX20_01241 0.25 -0.7
Or see this region's nucleotide sequence