Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01149

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01148 and MPMX20_01149 are separated by 204 nucleotidesMPMX20_01149 and MPMX20_01150 are separated by 44 nucleotidesMPMX20_01150 and MPMX20_01151 are separated by 70 nucleotides MPMX20_01148: MPMX20_01148 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 1,210,594 to 1,211,457 _01148 MPMX20_01149: MPMX20_01149 - Potassium binding protein Kbp, at 1,211,662 to 1,212,111 _01149 MPMX20_01150: MPMX20_01150 - hypothetical protein, at 1,212,156 to 1,212,551 _01150 MPMX20_01151: MPMX20_01151 - HTH-type transcriptional activator RhaS, at 1,212,622 to 1,213,542 _01151 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1210.699 kb on + strand, within MPMX20_01148at 1210.707 kb on - strand, within MPMX20_01148at 1210.707 kb on - strand, within MPMX20_01148at 1210.707 kb on - strand, within MPMX20_01148at 1210.791 kb on + strand, within MPMX20_01148at 1210.804 kb on - strand, within MPMX20_01148at 1210.846 kb on - strand, within MPMX20_01148at 1210.862 kb on - strand, within MPMX20_01148at 1210.893 kb on - strand, within MPMX20_01148at 1210.908 kb on + strand, within MPMX20_01148at 1210.932 kb on + strand, within MPMX20_01148at 1210.932 kb on + strand, within MPMX20_01148at 1210.932 kb on + strand, within MPMX20_01148at 1210.940 kb on - strand, within MPMX20_01148at 1211.021 kb on + strand, within MPMX20_01148at 1211.114 kb on + strand, within MPMX20_01148at 1211.159 kb on + strand, within MPMX20_01148at 1211.261 kb on + strand, within MPMX20_01148at 1211.266 kb on + strand, within MPMX20_01148at 1211.315 kb on + strand, within MPMX20_01148at 1211.323 kb on - strand, within MPMX20_01148at 1211.323 kb on - strand, within MPMX20_01148at 1211.323 kb on - strand, within MPMX20_01148at 1211.400 kb on + strandat 1211.403 kb on + strandat 1211.408 kb on - strandat 1211.438 kb on + strandat 1211.438 kb on + strandat 1211.441 kb on + strandat 1211.449 kb on - strandat 1211.454 kb on - strandat 1211.458 kb on + strandat 1211.519 kb on + strandat 1211.527 kb on - strandat 1211.634 kb on + strandat 1211.729 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.768 kb on + strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.776 kb on - strand, within MPMX20_01149at 1211.793 kb on + strand, within MPMX20_01149at 1211.897 kb on + strand, within MPMX20_01149at 1211.908 kb on + strand, within MPMX20_01149at 1211.938 kb on - strand, within MPMX20_01149at 1211.952 kb on + strand, within MPMX20_01149at 1211.972 kb on + strand, within MPMX20_01149at 1211.980 kb on - strand, within MPMX20_01149at 1212.001 kb on + strand, within MPMX20_01149at 1212.011 kb on - strand, within MPMX20_01149at 1212.127 kb on - strandat 1212.218 kb on - strand, within MPMX20_01150at 1212.225 kb on + strand, within MPMX20_01150at 1212.331 kb on - strand, within MPMX20_01150at 1212.353 kb on + strand, within MPMX20_01150at 1212.353 kb on + strand, within MPMX20_01150at 1212.371 kb on - strand, within MPMX20_01150at 1212.421 kb on - strand, within MPMX20_01150at 1212.474 kb on - strand, within MPMX20_01150at 1212.474 kb on - strand, within MPMX20_01150at 1212.482 kb on - strand, within MPMX20_01150at 1212.487 kb on + strand, within MPMX20_01150at 1212.489 kb on - strand, within MPMX20_01150at 1212.509 kb on - strand, within MPMX20_01150at 1212.539 kb on + strandat 1212.539 kb on + strandat 1212.541 kb on - strandat 1212.566 kb on - strandat 1212.578 kb on + strandat 1212.578 kb on + strandat 1212.578 kb on + strandat 1212.578 kb on + strandat 1212.586 kb on - strandat 1212.586 kb on - strandat 1212.591 kb on - strandat 1212.591 kb on - strandat 1212.593 kb on + strandat 1212.596 kb on - strandat 1212.600 kb on + strandat 1212.600 kb on + strandat 1212.600 kb on + strandat 1212.603 kb on - strandat 1212.608 kb on - strandat 1212.608 kb on - strandat 1212.619 kb on + strandat 1212.619 kb on + strandat 1212.621 kb on - strandat 1212.621 kb on - strandat 1212.713 kb on + strandat 1212.734 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.858 kb on + strand, within MPMX20_01151at 1212.882 kb on + strand, within MPMX20_01151at 1212.996 kb on + strand, within MPMX20_01151at 1213.025 kb on + strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151at 1213.033 kb on - strand, within MPMX20_01151

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,210,699 + MPMX20_01148 0.12 -1.4
1,210,707 - MPMX20_01148 0.13 -0.9
1,210,707 - MPMX20_01148 0.13 -1.1
1,210,707 - MPMX20_01148 0.13 +0.3
1,210,791 + MPMX20_01148 0.23 -0.5
1,210,804 - MPMX20_01148 0.24 -1.3
1,210,846 - MPMX20_01148 0.29 +0.7
1,210,862 - MPMX20_01148 0.31 -1.5
1,210,893 - MPMX20_01148 0.35 -1.5
1,210,908 + MPMX20_01148 0.36 -0.7
1,210,932 + MPMX20_01148 0.39 -1.0
1,210,932 + MPMX20_01148 0.39 +0.6
1,210,932 + MPMX20_01148 0.39 -2.1
1,210,940 - MPMX20_01148 0.40 -1.4
1,211,021 + MPMX20_01148 0.49 -0.1
1,211,114 + MPMX20_01148 0.60 +2.4
1,211,159 + MPMX20_01148 0.65 +0.0
1,211,261 + MPMX20_01148 0.77 -2.0
1,211,266 + MPMX20_01148 0.78 -0.1
1,211,315 + MPMX20_01148 0.83 -0.2
1,211,323 - MPMX20_01148 0.84 -1.1
1,211,323 - MPMX20_01148 0.84 -1.3
1,211,323 - MPMX20_01148 0.84 +0.0
1,211,400 + -1.4
1,211,403 + -0.9
1,211,408 - -0.3
1,211,438 + -0.0
1,211,438 + -1.3
1,211,441 + -0.1
1,211,449 - -1.0
1,211,454 - +0.7
1,211,458 + -1.7
1,211,519 + -1.1
1,211,527 - +1.3
1,211,634 + +0.6
1,211,729 + MPMX20_01149 0.15 -1.3
1,211,768 + MPMX20_01149 0.24 +0.2
1,211,768 + MPMX20_01149 0.24 -1.1
1,211,768 + MPMX20_01149 0.24 -2.2
1,211,768 + MPMX20_01149 0.24 -1.2
1,211,768 + MPMX20_01149 0.24 -0.5
1,211,768 + MPMX20_01149 0.24 -2.7
1,211,776 - MPMX20_01149 0.25 -1.7
1,211,776 - MPMX20_01149 0.25 +0.2
1,211,776 - MPMX20_01149 0.25 -0.8
1,211,776 - MPMX20_01149 0.25 +0.0
1,211,793 + MPMX20_01149 0.29 -1.4
1,211,897 + MPMX20_01149 0.52 -0.1
1,211,908 + MPMX20_01149 0.55 -0.1
1,211,938 - MPMX20_01149 0.61 -1.0
1,211,952 + MPMX20_01149 0.64 -2.1
1,211,972 + MPMX20_01149 0.69 -0.5
1,211,980 - MPMX20_01149 0.71 -1.5
1,212,001 + MPMX20_01149 0.75 -0.5
1,212,011 - MPMX20_01149 0.78 -2.2
1,212,127 - -0.7
1,212,218 - MPMX20_01150 0.16 +4.8
1,212,225 + MPMX20_01150 0.17 -0.7
1,212,331 - MPMX20_01150 0.44 -0.8
1,212,353 + MPMX20_01150 0.50 -1.4
1,212,353 + MPMX20_01150 0.50 +0.2
1,212,371 - MPMX20_01150 0.54 -1.1
1,212,421 - MPMX20_01150 0.67 -0.2
1,212,474 - MPMX20_01150 0.80 -2.4
1,212,474 - MPMX20_01150 0.80 -0.5
1,212,482 - MPMX20_01150 0.82 -1.1
1,212,487 + MPMX20_01150 0.84 -0.3
1,212,489 - MPMX20_01150 0.84 -3.3
1,212,509 - MPMX20_01150 0.89 +0.8
1,212,539 + -0.1
1,212,539 + -1.1
1,212,541 - +0.5
1,212,566 - -0.8
1,212,578 + -1.4
1,212,578 + +1.8
1,212,578 + -1.0
1,212,578 + +2.2
1,212,586 - -0.4
1,212,586 - +1.0
1,212,591 - -2.1
1,212,591 - +2.8
1,212,593 + -0.2
1,212,596 - -0.7
1,212,600 + -0.7
1,212,600 + -0.0
1,212,600 + -0.2
1,212,603 - -1.3
1,212,608 - -1.2
1,212,608 - -0.3
1,212,619 + -0.2
1,212,619 + +1.3
1,212,621 - -1.9
1,212,621 - -0.4
1,212,713 + -1.0
1,212,734 + MPMX20_01151 0.12 -0.8
1,212,858 + MPMX20_01151 0.26 -0.6
1,212,858 + MPMX20_01151 0.26 -0.3
1,212,858 + MPMX20_01151 0.26 -1.5
1,212,858 + MPMX20_01151 0.26 -0.6
1,212,882 + MPMX20_01151 0.28 -1.6
1,212,996 + MPMX20_01151 0.41 -0.7
1,213,025 + MPMX20_01151 0.44 -0.1
1,213,033 - MPMX20_01151 0.45 -0.1
1,213,033 - MPMX20_01151 0.45 +1.0
1,213,033 - MPMX20_01151 0.45 -0.4

Or see this region's nucleotide sequence