Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01148 and MPMX20_01149 are separated by 204 nucleotides MPMX20_01149 and MPMX20_01150 are separated by 44 nucleotides MPMX20_01150 and MPMX20_01151 are separated by 70 nucleotides
MPMX20_01148: MPMX20_01148 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 1,210,594 to 1,211,457
_01148
MPMX20_01149: MPMX20_01149 - Potassium binding protein Kbp, at 1,211,662 to 1,212,111
_01149
MPMX20_01150: MPMX20_01150 - hypothetical protein, at 1,212,156 to 1,212,551
_01150
MPMX20_01151: MPMX20_01151 - HTH-type transcriptional activator RhaS, at 1,212,622 to 1,213,542
_01151
Position (kb)
1211
1212
1213 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1210.699 kb on + strand, within MPMX20_01148 at 1210.707 kb on - strand, within MPMX20_01148 at 1210.707 kb on - strand, within MPMX20_01148 at 1210.707 kb on - strand, within MPMX20_01148 at 1210.791 kb on + strand, within MPMX20_01148 at 1210.804 kb on - strand, within MPMX20_01148 at 1210.846 kb on - strand, within MPMX20_01148 at 1210.862 kb on - strand, within MPMX20_01148 at 1210.893 kb on - strand, within MPMX20_01148 at 1210.908 kb on + strand, within MPMX20_01148 at 1210.932 kb on + strand, within MPMX20_01148 at 1210.932 kb on + strand, within MPMX20_01148 at 1210.932 kb on + strand, within MPMX20_01148 at 1210.940 kb on - strand, within MPMX20_01148 at 1211.021 kb on + strand, within MPMX20_01148 at 1211.114 kb on + strand, within MPMX20_01148 at 1211.159 kb on + strand, within MPMX20_01148 at 1211.261 kb on + strand, within MPMX20_01148 at 1211.266 kb on + strand, within MPMX20_01148 at 1211.315 kb on + strand, within MPMX20_01148 at 1211.323 kb on - strand, within MPMX20_01148 at 1211.323 kb on - strand, within MPMX20_01148 at 1211.323 kb on - strand, within MPMX20_01148 at 1211.400 kb on + strand at 1211.403 kb on + strand at 1211.408 kb on - strand at 1211.438 kb on + strand at 1211.438 kb on + strand at 1211.441 kb on + strand at 1211.449 kb on - strand at 1211.454 kb on - strand at 1211.458 kb on + strand at 1211.519 kb on + strand at 1211.527 kb on - strand at 1211.634 kb on + strand at 1211.729 kb on + strand, within MPMX20_01149 at 1211.768 kb on + strand, within MPMX20_01149 at 1211.768 kb on + strand, within MPMX20_01149 at 1211.768 kb on + strand, within MPMX20_01149 at 1211.768 kb on + strand, within MPMX20_01149 at 1211.768 kb on + strand, within MPMX20_01149 at 1211.768 kb on + strand, within MPMX20_01149 at 1211.776 kb on - strand, within MPMX20_01149 at 1211.776 kb on - strand, within MPMX20_01149 at 1211.776 kb on - strand, within MPMX20_01149 at 1211.776 kb on - strand, within MPMX20_01149 at 1211.793 kb on + strand, within MPMX20_01149 at 1211.897 kb on + strand, within MPMX20_01149 at 1211.908 kb on + strand, within MPMX20_01149 at 1211.938 kb on - strand, within MPMX20_01149 at 1211.952 kb on + strand, within MPMX20_01149 at 1211.972 kb on + strand, within MPMX20_01149 at 1211.980 kb on - strand, within MPMX20_01149 at 1212.001 kb on + strand, within MPMX20_01149 at 1212.011 kb on - strand, within MPMX20_01149 at 1212.127 kb on - strand at 1212.218 kb on - strand, within MPMX20_01150 at 1212.225 kb on + strand, within MPMX20_01150 at 1212.331 kb on - strand, within MPMX20_01150 at 1212.353 kb on + strand, within MPMX20_01150 at 1212.353 kb on + strand, within MPMX20_01150 at 1212.371 kb on - strand, within MPMX20_01150 at 1212.421 kb on - strand, within MPMX20_01150 at 1212.474 kb on - strand, within MPMX20_01150 at 1212.474 kb on - strand, within MPMX20_01150 at 1212.482 kb on - strand, within MPMX20_01150 at 1212.487 kb on + strand, within MPMX20_01150 at 1212.489 kb on - strand, within MPMX20_01150 at 1212.509 kb on - strand, within MPMX20_01150 at 1212.539 kb on + strand at 1212.539 kb on + strand at 1212.541 kb on - strand at 1212.566 kb on - strand at 1212.578 kb on + strand at 1212.578 kb on + strand at 1212.578 kb on + strand at 1212.578 kb on + strand at 1212.586 kb on - strand at 1212.586 kb on - strand at 1212.591 kb on - strand at 1212.591 kb on - strand at 1212.593 kb on + strand at 1212.596 kb on - strand at 1212.600 kb on + strand at 1212.600 kb on + strand at 1212.600 kb on + strand at 1212.603 kb on - strand at 1212.608 kb on - strand at 1212.608 kb on - strand at 1212.619 kb on + strand at 1212.619 kb on + strand at 1212.621 kb on - strand at 1212.621 kb on - strand at 1212.713 kb on + strand at 1212.734 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.858 kb on + strand, within MPMX20_01151 at 1212.882 kb on + strand, within MPMX20_01151 at 1212.996 kb on + strand, within MPMX20_01151 at 1213.025 kb on + strand, within MPMX20_01151 at 1213.033 kb on - strand, within MPMX20_01151 at 1213.033 kb on - strand, within MPMX20_01151 at 1213.033 kb on - strand, within MPMX20_01151
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,210,699 + MPMX20_01148 0.12 -1.4 1,210,707 - MPMX20_01148 0.13 -0.9 1,210,707 - MPMX20_01148 0.13 -1.1 1,210,707 - MPMX20_01148 0.13 +0.3 1,210,791 + MPMX20_01148 0.23 -0.5 1,210,804 - MPMX20_01148 0.24 -1.3 1,210,846 - MPMX20_01148 0.29 +0.7 1,210,862 - MPMX20_01148 0.31 -1.5 1,210,893 - MPMX20_01148 0.35 -1.5 1,210,908 + MPMX20_01148 0.36 -0.7 1,210,932 + MPMX20_01148 0.39 -1.0 1,210,932 + MPMX20_01148 0.39 +0.6 1,210,932 + MPMX20_01148 0.39 -2.1 1,210,940 - MPMX20_01148 0.40 -1.4 1,211,021 + MPMX20_01148 0.49 -0.1 1,211,114 + MPMX20_01148 0.60 +2.4 1,211,159 + MPMX20_01148 0.65 +0.0 1,211,261 + MPMX20_01148 0.77 -2.0 1,211,266 + MPMX20_01148 0.78 -0.1 1,211,315 + MPMX20_01148 0.83 -0.2 1,211,323 - MPMX20_01148 0.84 -1.1 1,211,323 - MPMX20_01148 0.84 -1.3 1,211,323 - MPMX20_01148 0.84 +0.0 1,211,400 + -1.4 1,211,403 + -0.9 1,211,408 - -0.3 1,211,438 + -0.0 1,211,438 + -1.3 1,211,441 + -0.1 1,211,449 - -1.0 1,211,454 - +0.7 1,211,458 + -1.7 1,211,519 + -1.1 1,211,527 - +1.3 1,211,634 + +0.6 1,211,729 + MPMX20_01149 0.15 -1.3 1,211,768 + MPMX20_01149 0.24 +0.2 1,211,768 + MPMX20_01149 0.24 -1.1 1,211,768 + MPMX20_01149 0.24 -2.2 1,211,768 + MPMX20_01149 0.24 -1.2 1,211,768 + MPMX20_01149 0.24 -0.5 1,211,768 + MPMX20_01149 0.24 -2.7 1,211,776 - MPMX20_01149 0.25 -1.7 1,211,776 - MPMX20_01149 0.25 +0.2 1,211,776 - MPMX20_01149 0.25 -0.8 1,211,776 - MPMX20_01149 0.25 +0.0 1,211,793 + MPMX20_01149 0.29 -1.4 1,211,897 + MPMX20_01149 0.52 -0.1 1,211,908 + MPMX20_01149 0.55 -0.1 1,211,938 - MPMX20_01149 0.61 -1.0 1,211,952 + MPMX20_01149 0.64 -2.1 1,211,972 + MPMX20_01149 0.69 -0.5 1,211,980 - MPMX20_01149 0.71 -1.5 1,212,001 + MPMX20_01149 0.75 -0.5 1,212,011 - MPMX20_01149 0.78 -2.2 1,212,127 - -0.7 1,212,218 - MPMX20_01150 0.16 +4.8 1,212,225 + MPMX20_01150 0.17 -0.7 1,212,331 - MPMX20_01150 0.44 -0.8 1,212,353 + MPMX20_01150 0.50 -1.4 1,212,353 + MPMX20_01150 0.50 +0.2 1,212,371 - MPMX20_01150 0.54 -1.1 1,212,421 - MPMX20_01150 0.67 -0.2 1,212,474 - MPMX20_01150 0.80 -2.4 1,212,474 - MPMX20_01150 0.80 -0.5 1,212,482 - MPMX20_01150 0.82 -1.1 1,212,487 + MPMX20_01150 0.84 -0.3 1,212,489 - MPMX20_01150 0.84 -3.3 1,212,509 - MPMX20_01150 0.89 +0.8 1,212,539 + -0.1 1,212,539 + -1.1 1,212,541 - +0.5 1,212,566 - -0.8 1,212,578 + -1.4 1,212,578 + +1.8 1,212,578 + -1.0 1,212,578 + +2.2 1,212,586 - -0.4 1,212,586 - +1.0 1,212,591 - -2.1 1,212,591 - +2.8 1,212,593 + -0.2 1,212,596 - -0.7 1,212,600 + -0.7 1,212,600 + -0.0 1,212,600 + -0.2 1,212,603 - -1.3 1,212,608 - -1.2 1,212,608 - -0.3 1,212,619 + -0.2 1,212,619 + +1.3 1,212,621 - -1.9 1,212,621 - -0.4 1,212,713 + -1.0 1,212,734 + MPMX20_01151 0.12 -0.8 1,212,858 + MPMX20_01151 0.26 -0.6 1,212,858 + MPMX20_01151 0.26 -0.3 1,212,858 + MPMX20_01151 0.26 -1.5 1,212,858 + MPMX20_01151 0.26 -0.6 1,212,882 + MPMX20_01151 0.28 -1.6 1,212,996 + MPMX20_01151 0.41 -0.7 1,213,025 + MPMX20_01151 0.44 -0.1 1,213,033 - MPMX20_01151 0.45 -0.1 1,213,033 - MPMX20_01151 0.45 +1.0 1,213,033 - MPMX20_01151 0.45 -0.4
Or see this region's nucleotide sequence