Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01134

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01132 and MPMX20_01133 are separated by 121 nucleotidesMPMX20_01133 and MPMX20_01134 are separated by 121 nucleotidesMPMX20_01134 and MPMX20_01135 overlap by 11 nucleotidesMPMX20_01135 and MPMX20_01136 are separated by 190 nucleotides MPMX20_01132: MPMX20_01132 - hypothetical protein, at 1,193,056 to 1,194,090 _01132 MPMX20_01133: MPMX20_01133 - Oxygen-insensitive NAD(P)H nitroreductase, at 1,194,212 to 1,194,865 _01133 MPMX20_01134: MPMX20_01134 - hypothetical protein, at 1,194,987 to 1,195,355 _01134 MPMX20_01135: MPMX20_01135 - HTH-type transcriptional regulator BetI, at 1,195,345 to 1,195,935 _01135 MPMX20_01136: MPMX20_01136 - hypothetical protein, at 1,196,126 to 1,197,229 _01136 Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1194.060 kb on + strandat 1194.073 kb on - strandat 1194.153 kb on + strandat 1194.175 kb on - strandat 1194.178 kb on + strandat 1194.188 kb on + strandat 1194.314 kb on + strand, within MPMX20_01133at 1194.314 kb on + strand, within MPMX20_01133at 1194.322 kb on - strand, within MPMX20_01133at 1194.419 kb on - strand, within MPMX20_01133at 1194.536 kb on - strand, within MPMX20_01133at 1194.545 kb on - strand, within MPMX20_01133at 1194.584 kb on - strand, within MPMX20_01133at 1194.587 kb on + strand, within MPMX20_01133at 1194.614 kb on + strand, within MPMX20_01133at 1194.625 kb on + strand, within MPMX20_01133at 1194.625 kb on + strand, within MPMX20_01133at 1194.633 kb on - strand, within MPMX20_01133at 1194.633 kb on - strand, within MPMX20_01133at 1194.700 kb on - strand, within MPMX20_01133at 1194.700 kb on - strand, within MPMX20_01133at 1194.733 kb on + strand, within MPMX20_01133at 1194.740 kb on - strand, within MPMX20_01133at 1194.740 kb on - strand, within MPMX20_01133at 1194.771 kb on - strand, within MPMX20_01133at 1194.810 kb on - strandat 1194.814 kb on + strandat 1194.831 kb on - strandat 1194.868 kb on - strandat 1194.978 kb on + strandat 1195.025 kb on + strand, within MPMX20_01134at 1195.139 kb on + strand, within MPMX20_01134at 1195.147 kb on - strand, within MPMX20_01134at 1195.200 kb on + strand, within MPMX20_01134at 1195.260 kb on - strand, within MPMX20_01134at 1195.282 kb on + strand, within MPMX20_01134at 1195.282 kb on + strand, within MPMX20_01134at 1195.290 kb on - strand, within MPMX20_01134at 1195.321 kb on + strandat 1195.396 kb on + strandat 1195.594 kb on - strand, within MPMX20_01135at 1195.666 kb on + strand, within MPMX20_01135at 1195.698 kb on + strand, within MPMX20_01135at 1195.698 kb on + strand, within MPMX20_01135at 1195.706 kb on - strand, within MPMX20_01135at 1195.706 kb on - strand, within MPMX20_01135at 1195.706 kb on - strand, within MPMX20_01135at 1195.818 kb on - strand, within MPMX20_01135at 1195.847 kb on + strand, within MPMX20_01135at 1195.859 kb on + strand, within MPMX20_01135at 1195.863 kb on - strand, within MPMX20_01135at 1195.863 kb on - strand, within MPMX20_01135at 1195.867 kb on - strand, within MPMX20_01135at 1195.937 kb on + strandat 1196.041 kb on - strandat 1196.146 kb on - strandat 1196.161 kb on - strandat 1196.161 kb on - strandat 1196.190 kb on - strandat 1196.191 kb on - strandat 1196.202 kb on + strandat 1196.229 kb on + strandat 1196.237 kb on - strand, within MPMX20_01136at 1196.253 kb on - strand, within MPMX20_01136at 1196.297 kb on + strand, within MPMX20_01136at 1196.306 kb on - strand, within MPMX20_01136

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,194,060 + +0.0
1,194,073 - +1.0
1,194,153 + -2.5
1,194,175 - +1.8
1,194,178 + -0.8
1,194,188 + +0.6
1,194,314 + MPMX20_01133 0.16 -1.1
1,194,314 + MPMX20_01133 0.16 +0.4
1,194,322 - MPMX20_01133 0.17 -0.9
1,194,419 - MPMX20_01133 0.32 -1.7
1,194,536 - MPMX20_01133 0.50 -0.3
1,194,545 - MPMX20_01133 0.51 +1.2
1,194,584 - MPMX20_01133 0.57 -0.0
1,194,587 + MPMX20_01133 0.57 -1.5
1,194,614 + MPMX20_01133 0.61 -1.1
1,194,625 + MPMX20_01133 0.63 -0.0
1,194,625 + MPMX20_01133 0.63 -0.5
1,194,633 - MPMX20_01133 0.64 +0.8
1,194,633 - MPMX20_01133 0.64 +0.5
1,194,700 - MPMX20_01133 0.75 -1.0
1,194,700 - MPMX20_01133 0.75 -1.2
1,194,733 + MPMX20_01133 0.80 -1.7
1,194,740 - MPMX20_01133 0.81 -1.6
1,194,740 - MPMX20_01133 0.81 +1.4
1,194,771 - MPMX20_01133 0.85 +0.2
1,194,810 - -0.1
1,194,814 + +1.5
1,194,831 - -0.5
1,194,868 - +1.8
1,194,978 + -0.3
1,195,025 + MPMX20_01134 0.10 +0.2
1,195,139 + MPMX20_01134 0.41 +0.2
1,195,147 - MPMX20_01134 0.43 -1.5
1,195,200 + MPMX20_01134 0.58 -1.1
1,195,260 - MPMX20_01134 0.74 -0.4
1,195,282 + MPMX20_01134 0.80 -0.5
1,195,282 + MPMX20_01134 0.80 +0.2
1,195,290 - MPMX20_01134 0.82 -1.6
1,195,321 + +0.2
1,195,396 + +1.2
1,195,594 - MPMX20_01135 0.42 -1.0
1,195,666 + MPMX20_01135 0.54 -0.4
1,195,698 + MPMX20_01135 0.60 +0.5
1,195,698 + MPMX20_01135 0.60 -2.3
1,195,706 - MPMX20_01135 0.61 -0.0
1,195,706 - MPMX20_01135 0.61 -2.9
1,195,706 - MPMX20_01135 0.61 -0.8
1,195,818 - MPMX20_01135 0.80 +2.8
1,195,847 + MPMX20_01135 0.85 +1.8
1,195,859 + MPMX20_01135 0.87 +1.2
1,195,863 - MPMX20_01135 0.88 -1.3
1,195,863 - MPMX20_01135 0.88 +0.2
1,195,867 - MPMX20_01135 0.88 -1.2
1,195,937 + +1.8
1,196,041 - -0.4
1,196,146 - -0.5
1,196,161 - +3.1
1,196,161 - -0.2
1,196,190 - +0.2
1,196,191 - -1.4
1,196,202 + -0.4
1,196,229 + +0.4
1,196,237 - MPMX20_01136 0.10 -0.4
1,196,253 - MPMX20_01136 0.12 -1.2
1,196,297 + MPMX20_01136 0.15 -0.0
1,196,306 - MPMX20_01136 0.16 -0.7

Or see this region's nucleotide sequence