Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00619

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00617 and MPMX20_00618 overlap by 8 nucleotidesMPMX20_00618 and MPMX20_00619 are separated by 135 nucleotidesMPMX20_00619 and MPMX20_00620 overlap by 1 nucleotides MPMX20_00617: MPMX20_00617 - hypothetical protein, at 642,976 to 643,353 _00617 MPMX20_00618: MPMX20_00618 - hypothetical protein, at 643,346 to 644,041 _00618 MPMX20_00619: MPMX20_00619 - Transcriptional regulator SlyA, at 644,177 to 644,647 _00619 MPMX20_00620: MPMX20_00620 - Inner membrane protein YibH, at 644,647 to 645,711 _00620 Position (kb) 644 645Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 643.207 kb on - strand, within MPMX20_00617at 643.228 kb on + strand, within MPMX20_00617at 643.255 kb on - strand, within MPMX20_00617at 643.260 kb on - strand, within MPMX20_00617at 643.323 kb on + strandat 643.326 kb on - strandat 643.332 kb on + strandat 643.332 kb on + strandat 643.334 kb on - strandat 643.340 kb on - strandat 643.375 kb on - strandat 643.468 kb on + strand, within MPMX20_00618at 643.479 kb on + strand, within MPMX20_00618at 643.479 kb on + strand, within MPMX20_00618at 643.487 kb on - strand, within MPMX20_00618at 643.487 kb on - strand, within MPMX20_00618at 643.529 kb on + strand, within MPMX20_00618at 643.604 kb on + strand, within MPMX20_00618at 643.604 kb on + strand, within MPMX20_00618at 643.604 kb on + strand, within MPMX20_00618at 643.633 kb on + strand, within MPMX20_00618at 643.633 kb on + strand, within MPMX20_00618at 643.763 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.812 kb on - strand, within MPMX20_00618at 643.812 kb on - strand, within MPMX20_00618at 643.817 kb on - strand, within MPMX20_00618at 643.822 kb on + strand, within MPMX20_00618at 643.878 kb on + strand, within MPMX20_00618at 643.878 kb on + strand, within MPMX20_00618at 643.886 kb on - strand, within MPMX20_00618at 644.192 kb on - strandat 644.280 kb on + strand, within MPMX20_00619at 644.280 kb on + strand, within MPMX20_00619at 644.287 kb on - strand, within MPMX20_00619at 644.367 kb on + strand, within MPMX20_00619at 644.367 kb on + strand, within MPMX20_00619at 644.367 kb on - strand, within MPMX20_00619at 644.402 kb on - strand, within MPMX20_00619at 644.402 kb on - strand, within MPMX20_00619at 644.482 kb on + strand, within MPMX20_00619at 644.531 kb on - strand, within MPMX20_00619at 644.624 kb on + strandat 644.635 kb on - strandat 644.675 kb on + strandat 644.675 kb on + strandat 644.681 kb on + strandat 644.683 kb on - strandat 644.683 kb on - strandat 644.683 kb on - strandat 644.683 kb on - strandat 644.689 kb on - strandat 644.689 kb on - strandat 644.750 kb on + strandat 644.758 kb on - strand, within MPMX20_00620at 644.774 kb on + strand, within MPMX20_00620at 644.808 kb on + strand, within MPMX20_00620at 644.841 kb on + strand, within MPMX20_00620at 644.843 kb on - strand, within MPMX20_00620at 644.871 kb on + strand, within MPMX20_00620at 644.895 kb on + strand, within MPMX20_00620at 644.903 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.997 kb on - strand, within MPMX20_00620at 645.039 kb on + strand, within MPMX20_00620at 645.039 kb on + strand, within MPMX20_00620at 645.047 kb on - strand, within MPMX20_00620at 645.091 kb on + strand, within MPMX20_00620at 645.137 kb on + strand, within MPMX20_00620at 645.137 kb on + strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.190 kb on - strand, within MPMX20_00620at 645.237 kb on - strand, within MPMX20_00620at 645.246 kb on + strand, within MPMX20_00620at 645.285 kb on + strand, within MPMX20_00620at 645.298 kb on - strand, within MPMX20_00620at 645.417 kb on + strand, within MPMX20_00620at 645.530 kb on + strand, within MPMX20_00620at 645.571 kb on + strand, within MPMX20_00620at 645.579 kb on - strand, within MPMX20_00620at 645.579 kb on - strand, within MPMX20_00620at 645.622 kb on + strandat 645.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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643,207 - MPMX20_00617 0.61 -1.2
643,228 + MPMX20_00617 0.67 -0.5
643,255 - MPMX20_00617 0.74 +2.6
643,260 - MPMX20_00617 0.75 -0.0
643,323 + +1.0
643,326 - -0.9
643,332 + -0.4
643,332 + -0.5
643,334 - -1.7
643,340 - -0.7
643,375 - -1.7
643,468 + MPMX20_00618 0.18 -0.8
643,479 + MPMX20_00618 0.19 -0.5
643,479 + MPMX20_00618 0.19 -1.4
643,487 - MPMX20_00618 0.20 -1.4
643,487 - MPMX20_00618 0.20 -1.5
643,529 + MPMX20_00618 0.26 +0.0
643,604 + MPMX20_00618 0.37 -1.1
643,604 + MPMX20_00618 0.37 -1.3
643,604 + MPMX20_00618 0.37 +0.2
643,633 + MPMX20_00618 0.41 +0.3
643,633 + MPMX20_00618 0.41 -0.6
643,763 + MPMX20_00618 0.60 -0.4
643,788 + MPMX20_00618 0.64 +1.0
643,788 + MPMX20_00618 0.64 -0.2
643,788 + MPMX20_00618 0.64 +0.0
643,796 - MPMX20_00618 0.65 +0.0
643,796 - MPMX20_00618 0.65 +0.4
643,796 - MPMX20_00618 0.65 +1.6
643,796 - MPMX20_00618 0.65 -2.0
643,796 - MPMX20_00618 0.65 +1.6
643,796 - MPMX20_00618 0.65 +3.2
643,812 - MPMX20_00618 0.67 +2.6
643,812 - MPMX20_00618 0.67 +1.3
643,817 - MPMX20_00618 0.68 -0.4
643,822 + MPMX20_00618 0.68 -1.3
643,878 + MPMX20_00618 0.76 -1.0
643,878 + MPMX20_00618 0.76 -0.3
643,886 - MPMX20_00618 0.78 -0.7
644,192 - +1.6
644,280 + MPMX20_00619 0.22 +3.4
644,280 + MPMX20_00619 0.22 -1.2
644,287 - MPMX20_00619 0.23 +0.3
644,367 + MPMX20_00619 0.40 +1.0
644,367 + MPMX20_00619 0.40 -1.7
644,367 - MPMX20_00619 0.40 -1.0
644,402 - MPMX20_00619 0.48 +1.4
644,402 - MPMX20_00619 0.48 -1.7
644,482 + MPMX20_00619 0.65 +0.2
644,531 - MPMX20_00619 0.75 -0.3
644,624 + -0.3
644,635 - +0.0
644,675 + -0.8
644,675 + -1.0
644,681 + +8.9
644,683 - -0.1
644,683 - -0.6
644,683 - -0.3
644,683 - -0.9
644,689 - -1.3
644,689 - -0.7
644,750 + +0.5
644,758 - MPMX20_00620 0.10 -1.1
644,774 + MPMX20_00620 0.12 +1.0
644,808 + MPMX20_00620 0.15 -0.6
644,841 + MPMX20_00620 0.18 -2.3
644,843 - MPMX20_00620 0.18 +0.3
644,871 + MPMX20_00620 0.21 +0.0
644,895 + MPMX20_00620 0.23 -0.1
644,903 - MPMX20_00620 0.24 -1.5
644,976 - MPMX20_00620 0.31 -0.1
644,976 - MPMX20_00620 0.31 -2.0
644,976 - MPMX20_00620 0.31 -1.3
644,997 - MPMX20_00620 0.33 +1.6
645,039 + MPMX20_00620 0.37 -0.4
645,039 + MPMX20_00620 0.37 -1.1
645,047 - MPMX20_00620 0.38 +0.5
645,091 + MPMX20_00620 0.42 -0.4
645,137 + MPMX20_00620 0.46 +1.0
645,137 + MPMX20_00620 0.46 -0.9
645,145 - MPMX20_00620 0.47 +0.1
645,145 - MPMX20_00620 0.47 -1.7
645,145 - MPMX20_00620 0.47 -1.3
645,190 - MPMX20_00620 0.51 -0.5
645,237 - MPMX20_00620 0.55 -0.9
645,246 + MPMX20_00620 0.56 -1.4
645,285 + MPMX20_00620 0.60 -0.7
645,298 - MPMX20_00620 0.61 -1.3
645,417 + MPMX20_00620 0.72 -1.3
645,530 + MPMX20_00620 0.83 +0.2
645,571 + MPMX20_00620 0.87 -0.1
645,579 - MPMX20_00620 0.88 -1.5
645,579 - MPMX20_00620 0.88 -1.9
645,622 + -0.6
645,628 + -0.6

Or see this region's nucleotide sequence