Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00245

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00243 and MPMX20_00244 overlap by 4 nucleotidesMPMX20_00244 and MPMX20_00245 overlap by 1 nucleotidesMPMX20_00245 and MPMX20_00246 are separated by 38 nucleotidesMPMX20_00246 and MPMX20_00247 are separated by 8 nucleotides MPMX20_00243: MPMX20_00243 - putative lipoprotein GfcB, at 260,231 to 260,869 _00243 MPMX20_00244: MPMX20_00244 - hypothetical protein, at 260,866 to 261,603 _00244 MPMX20_00245: MPMX20_00245 - hypothetical protein, at 261,603 to 263,699 _00245 MPMX20_00246: MPMX20_00246 - dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase, at 263,738 to 264,193 _00246 MPMX20_00247: MPMX20_00247 - hypothetical protein, at 264,202 to 264,714 _00247 Position (kb) 261 262 263 264Strain fitness (log2 ratio) -2 -1 0 1 2at 260.619 kb on + strand, within MPMX20_00243at 260.646 kb on - strand, within MPMX20_00243at 260.670 kb on + strand, within MPMX20_00243at 260.690 kb on + strand, within MPMX20_00243at 260.693 kb on - strand, within MPMX20_00243at 260.693 kb on - strand, within MPMX20_00243at 260.693 kb on - strand, within MPMX20_00243at 260.693 kb on - strand, within MPMX20_00243at 260.693 kb on - strand, within MPMX20_00243at 260.714 kb on - strand, within MPMX20_00243at 260.742 kb on - strand, within MPMX20_00243at 260.848 kb on + strandat 260.848 kb on + strandat 260.848 kb on + strandat 260.848 kb on + strandat 260.848 kb on + strandat 260.848 kb on + strandat 260.856 kb on - strandat 260.856 kb on - strandat 260.856 kb on - strandat 260.903 kb on + strandat 260.935 kb on + strandat 260.935 kb on + strandat 260.964 kb on + strand, within MPMX20_00244at 260.972 kb on - strand, within MPMX20_00244at 260.979 kb on - strand, within MPMX20_00244at 261.022 kb on + strand, within MPMX20_00244at 261.115 kb on + strand, within MPMX20_00244at 261.174 kb on + strand, within MPMX20_00244at 261.182 kb on - strand, within MPMX20_00244at 261.294 kb on + strand, within MPMX20_00244at 261.382 kb on - strand, within MPMX20_00244at 261.401 kb on + strand, within MPMX20_00244at 261.401 kb on + strand, within MPMX20_00244at 261.406 kb on + strand, within MPMX20_00244at 261.406 kb on + strand, within MPMX20_00244at 261.414 kb on - strand, within MPMX20_00244at 261.493 kb on + strand, within MPMX20_00244at 261.576 kb on - strandat 261.578 kb on + strandat 261.578 kb on + strandat 261.635 kb on - strandat 261.699 kb on + strandat 261.699 kb on + strandat 261.699 kb on + strandat 261.727 kb on + strandat 261.744 kb on - strandat 261.816 kb on - strand, within MPMX20_00245at 261.816 kb on - strand, within MPMX20_00245at 261.827 kb on + strand, within MPMX20_00245at 261.842 kb on + strand, within MPMX20_00245at 261.842 kb on + strand, within MPMX20_00245at 261.842 kb on + strand, within MPMX20_00245at 261.847 kb on + strand, within MPMX20_00245at 261.847 kb on + strand, within MPMX20_00245at 261.850 kb on - strand, within MPMX20_00245at 261.850 kb on - strand, within MPMX20_00245at 261.850 kb on - strand, within MPMX20_00245at 261.850 kb on - strand, within MPMX20_00245at 261.855 kb on - strand, within MPMX20_00245at 261.855 kb on - strand, within MPMX20_00245at 261.855 kb on - strand, within MPMX20_00245at 261.869 kb on + strand, within MPMX20_00245at 261.968 kb on + strand, within MPMX20_00245at 261.986 kb on + strand, within MPMX20_00245at 261.997 kb on + strand, within MPMX20_00245at 262.039 kb on + strand, within MPMX20_00245at 262.074 kb on - strand, within MPMX20_00245at 262.180 kb on - strand, within MPMX20_00245at 262.211 kb on + strand, within MPMX20_00245at 262.219 kb on - strand, within MPMX20_00245at 262.237 kb on - strand, within MPMX20_00245at 262.290 kb on - strand, within MPMX20_00245at 262.297 kb on - strand, within MPMX20_00245at 262.311 kb on - strand, within MPMX20_00245at 262.363 kb on + strand, within MPMX20_00245at 262.370 kb on + strand, within MPMX20_00245at 262.371 kb on - strand, within MPMX20_00245at 262.371 kb on - strand, within MPMX20_00245at 262.371 kb on - strand, within MPMX20_00245at 262.375 kb on + strand, within MPMX20_00245at 262.383 kb on - strand, within MPMX20_00245at 262.388 kb on - strand, within MPMX20_00245at 262.398 kb on - strand, within MPMX20_00245at 262.400 kb on - strand, within MPMX20_00245at 262.405 kb on + strand, within MPMX20_00245at 262.426 kb on - strand, within MPMX20_00245at 262.522 kb on + strand, within MPMX20_00245at 262.522 kb on + strand, within MPMX20_00245at 262.522 kb on + strand, within MPMX20_00245at 262.587 kb on - strand, within MPMX20_00245at 262.587 kb on - strand, within MPMX20_00245at 262.597 kb on - strand, within MPMX20_00245at 262.640 kb on - strand, within MPMX20_00245at 262.674 kb on + strand, within MPMX20_00245at 262.678 kb on + strand, within MPMX20_00245at 262.698 kb on + strand, within MPMX20_00245at 262.706 kb on - strand, within MPMX20_00245at 262.772 kb on - strand, within MPMX20_00245at 262.829 kb on - strand, within MPMX20_00245at 262.834 kb on + strand, within MPMX20_00245at 262.834 kb on + strand, within MPMX20_00245at 262.842 kb on - strand, within MPMX20_00245at 262.844 kb on + strand, within MPMX20_00245at 262.890 kb on + strand, within MPMX20_00245at 262.890 kb on + strand, within MPMX20_00245at 262.893 kb on - strand, within MPMX20_00245at 262.893 kb on - strand, within MPMX20_00245at 262.945 kb on - strand, within MPMX20_00245at 262.990 kb on + strand, within MPMX20_00245at 263.053 kb on - strand, within MPMX20_00245at 263.097 kb on + strand, within MPMX20_00245at 263.105 kb on - strand, within MPMX20_00245at 263.171 kb on + strand, within MPMX20_00245at 263.171 kb on + strand, within MPMX20_00245at 263.179 kb on - strand, within MPMX20_00245at 263.212 kb on + strand, within MPMX20_00245at 263.272 kb on + strand, within MPMX20_00245at 263.280 kb on - strand, within MPMX20_00245at 263.354 kb on + strand, within MPMX20_00245at 263.356 kb on + strand, within MPMX20_00245at 263.395 kb on - strand, within MPMX20_00245at 263.420 kb on + strand, within MPMX20_00245at 263.428 kb on - strand, within MPMX20_00245at 263.443 kb on + strand, within MPMX20_00245at 263.521 kb on - strandat 263.538 kb on + strandat 263.559 kb on - strandat 263.567 kb on + strandat 263.580 kb on - strandat 263.585 kb on - strandat 263.637 kb on - strandat 263.717 kb on + strandat 263.722 kb on - strandat 263.744 kb on - strandat 263.747 kb on + strandat 263.755 kb on - strandat 263.772 kb on + strandat 263.780 kb on - strandat 263.848 kb on - strand, within MPMX20_00246at 263.850 kb on + strand, within MPMX20_00246at 263.897 kb on + strand, within MPMX20_00246at 263.902 kb on + strand, within MPMX20_00246at 263.907 kb on + strand, within MPMX20_00246at 263.960 kb on + strand, within MPMX20_00246at 263.960 kb on + strand, within MPMX20_00246at 263.968 kb on - strand, within MPMX20_00246at 263.968 kb on - strand, within MPMX20_00246at 264.026 kb on - strand, within MPMX20_00246at 264.084 kb on + strand, within MPMX20_00246at 264.099 kb on - strand, within MPMX20_00246at 264.172 kb on - strandat 264.174 kb on + strandat 264.187 kb on - strandat 264.207 kb on - strandat 264.208 kb on - strandat 264.235 kb on + strandat 264.243 kb on - strandat 264.243 kb on - strandat 264.327 kb on + strand, within MPMX20_00247at 264.327 kb on + strand, within MPMX20_00247at 264.340 kb on - strand, within MPMX20_00247at 264.375 kb on - strand, within MPMX20_00247at 264.378 kb on - strand, within MPMX20_00247at 264.395 kb on + strand, within MPMX20_00247at 264.395 kb on + strand, within MPMX20_00247at 264.395 kb on + strand, within MPMX20_00247at 264.403 kb on - strand, within MPMX20_00247at 264.451 kb on + strand, within MPMX20_00247at 264.507 kb on - strand, within MPMX20_00247at 264.536 kb on + strand, within MPMX20_00247at 264.536 kb on + strand, within MPMX20_00247at 264.546 kb on + strand, within MPMX20_00247at 264.546 kb on + strand, within MPMX20_00247at 264.554 kb on - strand, within MPMX20_00247at 264.568 kb on - strand, within MPMX20_00247at 264.682 kb on + strandat 264.682 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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260,619 + MPMX20_00243 0.61 -0.7
260,646 - MPMX20_00243 0.65 -1.6
260,670 + MPMX20_00243 0.69 +1.0
260,690 + MPMX20_00243 0.72 +0.6
260,693 - MPMX20_00243 0.72 +1.0
260,693 - MPMX20_00243 0.72 -1.9
260,693 - MPMX20_00243 0.72 -0.3
260,693 - MPMX20_00243 0.72 -2.5
260,693 - MPMX20_00243 0.72 -1.1
260,714 - MPMX20_00243 0.76 +0.6
260,742 - MPMX20_00243 0.80 -1.5
260,848 + -2.6
260,848 + -0.0
260,848 + -1.0
260,848 + -0.8
260,848 + -0.0
260,848 + -0.5
260,856 - +0.3
260,856 - +0.8
260,856 - +0.1
260,903 + +0.8
260,935 + -1.3
260,935 + +0.3
260,964 + MPMX20_00244 0.13 +2.0
260,972 - MPMX20_00244 0.14 -1.2
260,979 - MPMX20_00244 0.15 -1.9
261,022 + MPMX20_00244 0.21 +0.6
261,115 + MPMX20_00244 0.34 +0.9
261,174 + MPMX20_00244 0.42 -1.5
261,182 - MPMX20_00244 0.43 -0.8
261,294 + MPMX20_00244 0.58 +0.3
261,382 - MPMX20_00244 0.70 +2.6
261,401 + MPMX20_00244 0.72 +0.5
261,401 + MPMX20_00244 0.72 +1.6
261,406 + MPMX20_00244 0.73 +0.8
261,406 + MPMX20_00244 0.73 +2.6
261,414 - MPMX20_00244 0.74 -0.5
261,493 + MPMX20_00244 0.85 +0.9
261,576 - +0.6
261,578 + +0.1
261,578 + -0.3
261,635 - +1.0
261,699 + +0.4
261,699 + +1.6
261,699 + -0.5
261,727 + +2.6
261,744 - -0.4
261,816 - MPMX20_00245 0.10 +1.9
261,816 - MPMX20_00245 0.10 -0.6
261,827 + MPMX20_00245 0.11 -0.6
261,842 + MPMX20_00245 0.11 +0.4
261,842 + MPMX20_00245 0.11 +1.0
261,842 + MPMX20_00245 0.11 -0.7
261,847 + MPMX20_00245 0.12 -0.1
261,847 + MPMX20_00245 0.12 -2.2
261,850 - MPMX20_00245 0.12 -0.2
261,850 - MPMX20_00245 0.12 -1.0
261,850 - MPMX20_00245 0.12 -1.2
261,850 - MPMX20_00245 0.12 +0.7
261,855 - MPMX20_00245 0.12 +0.7
261,855 - MPMX20_00245 0.12 -0.7
261,855 - MPMX20_00245 0.12 -0.2
261,869 + MPMX20_00245 0.13 -2.2
261,968 + MPMX20_00245 0.17 -0.5
261,986 + MPMX20_00245 0.18 +0.6
261,997 + MPMX20_00245 0.19 +2.0
262,039 + MPMX20_00245 0.21 -0.3
262,074 - MPMX20_00245 0.22 -0.7
262,180 - MPMX20_00245 0.28 +0.1
262,211 + MPMX20_00245 0.29 -0.8
262,219 - MPMX20_00245 0.29 +1.0
262,237 - MPMX20_00245 0.30 -1.2
262,290 - MPMX20_00245 0.33 -2.1
262,297 - MPMX20_00245 0.33 +0.4
262,311 - MPMX20_00245 0.34 +1.6
262,363 + MPMX20_00245 0.36 -1.3
262,370 + MPMX20_00245 0.37 -0.6
262,371 - MPMX20_00245 0.37 +1.6
262,371 - MPMX20_00245 0.37 -0.8
262,371 - MPMX20_00245 0.37 -0.5
262,375 + MPMX20_00245 0.37 +0.1
262,383 - MPMX20_00245 0.37 +2.5
262,388 - MPMX20_00245 0.37 +1.0
262,398 - MPMX20_00245 0.38 -1.3
262,400 - MPMX20_00245 0.38 -0.0
262,405 + MPMX20_00245 0.38 +1.6
262,426 - MPMX20_00245 0.39 -0.6
262,522 + MPMX20_00245 0.44 -0.6
262,522 + MPMX20_00245 0.44 -1.0
262,522 + MPMX20_00245 0.44 -1.7
262,587 - MPMX20_00245 0.47 -1.4
262,587 - MPMX20_00245 0.47 +1.0
262,597 - MPMX20_00245 0.47 +0.8
262,640 - MPMX20_00245 0.49 -1.5
262,674 + MPMX20_00245 0.51 -0.9
262,678 + MPMX20_00245 0.51 -1.0
262,698 + MPMX20_00245 0.52 -0.6
262,706 - MPMX20_00245 0.53 -1.3
262,772 - MPMX20_00245 0.56 +2.6
262,829 - MPMX20_00245 0.58 -0.8
262,834 + MPMX20_00245 0.59 -0.0
262,834 + MPMX20_00245 0.59 -0.7
262,842 - MPMX20_00245 0.59 +1.0
262,844 + MPMX20_00245 0.59 +0.9
262,890 + MPMX20_00245 0.61 -1.9
262,890 + MPMX20_00245 0.61 -0.5
262,893 - MPMX20_00245 0.62 -0.6
262,893 - MPMX20_00245 0.62 -1.2
262,945 - MPMX20_00245 0.64 -0.2
262,990 + MPMX20_00245 0.66 -0.0
263,053 - MPMX20_00245 0.69 +2.6
263,097 + MPMX20_00245 0.71 +0.3
263,105 - MPMX20_00245 0.72 -1.0
263,171 + MPMX20_00245 0.75 -0.9
263,171 + MPMX20_00245 0.75 +1.6
263,179 - MPMX20_00245 0.75 +1.0
263,212 + MPMX20_00245 0.77 +0.5
263,272 + MPMX20_00245 0.80 -1.1
263,280 - MPMX20_00245 0.80 -0.5
263,354 + MPMX20_00245 0.84 -2.1
263,356 + MPMX20_00245 0.84 -1.7
263,395 - MPMX20_00245 0.85 -1.4
263,420 + MPMX20_00245 0.87 -0.5
263,428 - MPMX20_00245 0.87 -1.9
263,443 + MPMX20_00245 0.88 +0.1
263,521 - +1.0
263,538 + -0.7
263,559 - -1.5
263,567 + +0.8
263,580 - +0.0
263,585 - -0.0
263,637 - -1.6
263,717 + -0.5
263,722 - -1.8
263,744 - -0.4
263,747 + -0.4
263,755 - +2.2
263,772 + -1.0
263,780 - +1.6
263,848 - MPMX20_00246 0.24 +0.1
263,850 + MPMX20_00246 0.25 +0.6
263,897 + MPMX20_00246 0.35 -0.7
263,902 + MPMX20_00246 0.36 -0.2
263,907 + MPMX20_00246 0.37 -0.4
263,960 + MPMX20_00246 0.49 -1.8
263,960 + MPMX20_00246 0.49 -2.5
263,968 - MPMX20_00246 0.50 -0.1
263,968 - MPMX20_00246 0.50 +2.2
264,026 - MPMX20_00246 0.63 +0.3
264,084 + MPMX20_00246 0.76 -1.1
264,099 - MPMX20_00246 0.79 -0.2
264,172 - -1.3
264,174 + -0.2
264,187 - -0.7
264,207 - -0.7
264,208 - -1.1
264,235 + -0.3
264,243 - +0.8
264,243 - +2.6
264,327 + MPMX20_00247 0.24 -1.5
264,327 + MPMX20_00247 0.24 -2.3
264,340 - MPMX20_00247 0.27 -2.5
264,375 - MPMX20_00247 0.34 -2.0
264,378 - MPMX20_00247 0.34 -0.9
264,395 + MPMX20_00247 0.38 +0.3
264,395 + MPMX20_00247 0.38 -0.7
264,395 + MPMX20_00247 0.38 +0.4
264,403 - MPMX20_00247 0.39 -0.9
264,451 + MPMX20_00247 0.49 -1.3
264,507 - MPMX20_00247 0.59 -0.2
264,536 + MPMX20_00247 0.65 +0.4
264,536 + MPMX20_00247 0.65 -1.7
264,546 + MPMX20_00247 0.67 -0.1
264,546 + MPMX20_00247 0.67 -0.6
264,554 - MPMX20_00247 0.69 +0.9
264,568 - MPMX20_00247 0.71 +0.3
264,682 + -1.0
264,682 + -1.9

Or see this region's nucleotide sequence