Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00176

Experiment: M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00175 and MPMX20_00176 are separated by 245 nucleotidesMPMX20_00176 and MPMX20_00177 are separated by 58 nucleotides MPMX20_00175: MPMX20_00175 - hypothetical protein, at 182,677 to 183,387 _00175 MPMX20_00176: MPMX20_00176 - Cold shock protein CspA, at 183,633 to 183,845 _00176 MPMX20_00177: MPMX20_00177 - Glyoxylate/hydroxypyruvate reductase B, at 183,904 to 184,878 _00177 Position (kb) 183 184Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 182.641 kb on - strandat 182.659 kb on + strandat 182.699 kb on - strandat 182.713 kb on - strandat 182.713 kb on - strandat 182.727 kb on + strandat 182.742 kb on - strandat 182.743 kb on - strandat 182.775 kb on + strand, within MPMX20_00175at 182.783 kb on - strand, within MPMX20_00175at 182.783 kb on - strand, within MPMX20_00175at 182.870 kb on - strand, within MPMX20_00175at 182.921 kb on - strand, within MPMX20_00175at 182.935 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.947 kb on + strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.955 kb on - strand, within MPMX20_00175at 182.966 kb on - strand, within MPMX20_00175at 182.982 kb on + strand, within MPMX20_00175at 182.990 kb on - strand, within MPMX20_00175at 182.990 kb on - strand, within MPMX20_00175at 182.991 kb on - strand, within MPMX20_00175at 183.012 kb on - strand, within MPMX20_00175at 183.015 kb on + strand, within MPMX20_00175at 183.015 kb on + strand, within MPMX20_00175at 183.015 kb on + strand, within MPMX20_00175at 183.023 kb on - strand, within MPMX20_00175at 183.054 kb on - strand, within MPMX20_00175at 183.116 kb on - strand, within MPMX20_00175at 183.130 kb on + strand, within MPMX20_00175at 183.138 kb on - strand, within MPMX20_00175at 183.177 kb on + strand, within MPMX20_00175at 183.216 kb on + strand, within MPMX20_00175at 183.225 kb on - strand, within MPMX20_00175at 183.230 kb on + strand, within MPMX20_00175at 183.238 kb on - strand, within MPMX20_00175at 183.268 kb on + strand, within MPMX20_00175at 183.276 kb on + strand, within MPMX20_00175at 183.293 kb on + strand, within MPMX20_00175at 183.329 kb on + strandat 183.337 kb on + strandat 183.337 kb on + strandat 183.344 kb on + strandat 183.344 kb on - strandat 183.354 kb on + strandat 183.362 kb on - strandat 183.465 kb on - strandat 183.492 kb on + strandat 183.492 kb on + strandat 183.493 kb on + strandat 183.501 kb on - strandat 183.501 kb on - strandat 183.516 kb on + strandat 183.602 kb on - strandat 183.705 kb on - strand, within MPMX20_00176at 183.712 kb on + strand, within MPMX20_00176at 183.731 kb on + strand, within MPMX20_00176at 183.731 kb on + strand, within MPMX20_00176at 183.731 kb on + strand, within MPMX20_00176at 183.739 kb on - strand, within MPMX20_00176at 183.749 kb on - strand, within MPMX20_00176at 183.846 kb on + strandat 183.921 kb on + strandat 183.929 kb on - strandat 183.935 kb on + strandat 184.103 kb on - strand, within MPMX20_00177at 184.109 kb on + strand, within MPMX20_00177at 184.115 kb on + strand, within MPMX20_00177at 184.131 kb on - strand, within MPMX20_00177at 184.158 kb on + strand, within MPMX20_00177at 184.265 kb on - strand, within MPMX20_00177at 184.282 kb on + strand, within MPMX20_00177at 184.289 kb on + strand, within MPMX20_00177at 184.395 kb on + strand, within MPMX20_00177at 184.403 kb on - strand, within MPMX20_00177at 184.403 kb on - strand, within MPMX20_00177at 184.409 kb on - strand, within MPMX20_00177at 184.435 kb on - strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.466 kb on - strand, within MPMX20_00177at 184.466 kb on - strand, within MPMX20_00177at 184.574 kb on + strand, within MPMX20_00177at 184.620 kb on + strand, within MPMX20_00177at 184.620 kb on + strand, within MPMX20_00177at 184.628 kb on - strand, within MPMX20_00177at 184.628 kb on - strand, within MPMX20_00177at 184.662 kb on + strand, within MPMX20_00177at 184.729 kb on - strand, within MPMX20_00177at 184.755 kb on + strand, within MPMX20_00177at 184.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium jejuense SAI_031
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182,641 - -0.9
182,659 + -1.2
182,699 - +0.0
182,713 - -1.1
182,713 - +0.8
182,727 + -0.1
182,742 - -1.0
182,743 - -1.6
182,775 + MPMX20_00175 0.14 -0.9
182,783 - MPMX20_00175 0.15 -0.8
182,783 - MPMX20_00175 0.15 -1.9
182,870 - MPMX20_00175 0.27 -0.3
182,921 - MPMX20_00175 0.34 -1.2
182,935 + MPMX20_00175 0.36 +1.6
182,947 + MPMX20_00175 0.38 -1.2
182,947 + MPMX20_00175 0.38 +0.8
182,947 + MPMX20_00175 0.38 +0.6
182,947 + MPMX20_00175 0.38 -0.6
182,947 + MPMX20_00175 0.38 +0.3
182,947 + MPMX20_00175 0.38 +2.3
182,947 + MPMX20_00175 0.38 +0.0
182,955 - MPMX20_00175 0.39 +1.0
182,955 - MPMX20_00175 0.39 -1.7
182,955 - MPMX20_00175 0.39 -0.2
182,955 - MPMX20_00175 0.39 +0.3
182,955 - MPMX20_00175 0.39 +1.8
182,955 - MPMX20_00175 0.39 +0.6
182,955 - MPMX20_00175 0.39 -1.8
182,966 - MPMX20_00175 0.41 +1.6
182,982 + MPMX20_00175 0.43 -0.3
182,990 - MPMX20_00175 0.44 +1.7
182,990 - MPMX20_00175 0.44 +1.5
182,991 - MPMX20_00175 0.44 -1.6
183,012 - MPMX20_00175 0.47 -1.3
183,015 + MPMX20_00175 0.48 +0.3
183,015 + MPMX20_00175 0.48 +0.6
183,015 + MPMX20_00175 0.48 -1.6
183,023 - MPMX20_00175 0.49 -0.4
183,054 - MPMX20_00175 0.53 -0.7
183,116 - MPMX20_00175 0.62 +2.4
183,130 + MPMX20_00175 0.64 +1.6
183,138 - MPMX20_00175 0.65 +0.2
183,177 + MPMX20_00175 0.70 -1.1
183,216 + MPMX20_00175 0.76 -0.3
183,225 - MPMX20_00175 0.77 +0.0
183,230 + MPMX20_00175 0.78 -0.1
183,238 - MPMX20_00175 0.79 -0.9
183,268 + MPMX20_00175 0.83 -0.4
183,276 + MPMX20_00175 0.84 +0.0
183,293 + MPMX20_00175 0.87 -2.0
183,329 + -0.9
183,337 + +8.6
183,337 + +4.4
183,344 + -1.0
183,344 - +0.3
183,354 + -1.7
183,362 - -1.0
183,465 - -2.2
183,492 + -0.2
183,492 + -1.8
183,493 + +8.6
183,501 - -0.5
183,501 - -0.2
183,516 + +0.0
183,602 - +1.4
183,705 - MPMX20_00176 0.34 -0.2
183,712 + MPMX20_00176 0.37 -1.7
183,731 + MPMX20_00176 0.46 +1.6
183,731 + MPMX20_00176 0.46 -2.3
183,731 + MPMX20_00176 0.46 +0.6
183,739 - MPMX20_00176 0.50 -0.9
183,749 - MPMX20_00176 0.54 -0.3
183,846 + -0.8
183,921 + -0.6
183,929 - +1.3
183,935 + -0.2
184,103 - MPMX20_00177 0.20 +0.4
184,109 + MPMX20_00177 0.21 -1.6
184,115 + MPMX20_00177 0.22 -0.7
184,131 - MPMX20_00177 0.23 -0.7
184,158 + MPMX20_00177 0.26 +0.1
184,265 - MPMX20_00177 0.37 -0.2
184,282 + MPMX20_00177 0.39 -2.0
184,289 + MPMX20_00177 0.39 -1.3
184,395 + MPMX20_00177 0.50 -0.7
184,403 - MPMX20_00177 0.51 -0.9
184,403 - MPMX20_00177 0.51 -0.2
184,409 - MPMX20_00177 0.52 +0.0
184,435 - MPMX20_00177 0.54 -0.1
184,458 + MPMX20_00177 0.57 -1.0
184,458 + MPMX20_00177 0.57 +0.6
184,458 + MPMX20_00177 0.57 -0.6
184,458 + MPMX20_00177 0.57 +2.6
184,458 + MPMX20_00177 0.57 +1.6
184,466 - MPMX20_00177 0.58 -1.4
184,466 - MPMX20_00177 0.58 +0.4
184,574 + MPMX20_00177 0.69 -0.4
184,620 + MPMX20_00177 0.73 +0.8
184,620 + MPMX20_00177 0.73 +0.0
184,628 - MPMX20_00177 0.74 -0.2
184,628 - MPMX20_00177 0.74 +0.0
184,662 + MPMX20_00177 0.78 +0.0
184,729 - MPMX20_00177 0.85 -0.6
184,755 + MPMX20_00177 0.87 -0.6
184,808 - +0.8

Or see this region's nucleotide sequence