Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03400 and MPMX20_03401 are separated by 90 nucleotides MPMX20_03401 and MPMX20_03402 overlap by 1 nucleotides MPMX20_03402 and MPMX20_03403 are separated by 17 nucleotides MPMX20_03403 and MPMX20_03404 are separated by 96 nucleotides
MPMX20_03400: MPMX20_03400 - Maltose-6'-phosphate glucosidase, at 3,587,127 to 3,588,494
_03400
MPMX20_03401: MPMX20_03401 - 3-mercaptopyruvate sulfurtransferase, at 3,588,585 to 3,589,433
_03401
MPMX20_03402: MPMX20_03402 - hypothetical protein, at 3,589,433 to 3,590,203
_03402
MPMX20_03403: MPMX20_03403 - hypothetical protein, at 3,590,221 to 3,590,997
_03403
MPMX20_03404: MPMX20_03404 - Peptidase B, at 3,591,094 to 3,592,380
_03404
Position (kb)
3589
3590
3591 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3588.445 kb on + strand at 3588.445 kb on + strand at 3588.445 kb on + strand at 3588.448 kb on - strand at 3588.448 kb on - strand at 3588.448 kb on - strand at 3588.448 kb on - strand at 3588.592 kb on + strand at 3588.600 kb on - strand at 3588.780 kb on - strand, within MPMX20_03401 at 3588.797 kb on - strand, within MPMX20_03401 at 3588.881 kb on - strand, within MPMX20_03401 at 3588.982 kb on + strand, within MPMX20_03401 at 3589.015 kb on - strand, within MPMX20_03401 at 3589.053 kb on + strand, within MPMX20_03401 at 3589.061 kb on - strand, within MPMX20_03401 at 3589.234 kb on + strand, within MPMX20_03401 at 3589.242 kb on - strand, within MPMX20_03401 at 3589.298 kb on - strand, within MPMX20_03401 at 3589.319 kb on - strand, within MPMX20_03401 at 3589.359 kb on - strand at 3589.370 kb on + strand at 3589.378 kb on - strand at 3589.443 kb on - strand at 3589.467 kb on + strand at 3589.472 kb on + strand at 3589.472 kb on + strand at 3589.515 kb on + strand, within MPMX20_03402 at 3589.536 kb on + strand, within MPMX20_03402 at 3589.544 kb on - strand, within MPMX20_03402 at 3589.544 kb on - strand, within MPMX20_03402 at 3589.569 kb on - strand, within MPMX20_03402 at 3589.644 kb on + strand, within MPMX20_03402 at 3589.651 kb on + strand, within MPMX20_03402 at 3589.651 kb on + strand, within MPMX20_03402 at 3589.659 kb on - strand, within MPMX20_03402 at 3589.667 kb on + strand, within MPMX20_03402 at 3589.693 kb on - strand, within MPMX20_03402 at 3589.746 kb on + strand, within MPMX20_03402 at 3589.755 kb on + strand, within MPMX20_03402 at 3589.755 kb on + strand, within MPMX20_03402 at 3589.763 kb on + strand, within MPMX20_03402 at 3589.771 kb on - strand, within MPMX20_03402 at 3589.773 kb on - strand, within MPMX20_03402 at 3589.841 kb on - strand, within MPMX20_03402 at 3589.845 kb on + strand, within MPMX20_03402 at 3589.852 kb on + strand, within MPMX20_03402 at 3589.855 kb on - strand, within MPMX20_03402 at 3589.860 kb on - strand, within MPMX20_03402 at 3589.887 kb on - strand, within MPMX20_03402 at 3589.972 kb on - strand, within MPMX20_03402 at 3589.999 kb on - strand, within MPMX20_03402 at 3590.005 kb on - strand, within MPMX20_03402 at 3590.024 kb on + strand, within MPMX20_03402 at 3590.041 kb on - strand, within MPMX20_03402 at 3590.466 kb on + strand, within MPMX20_03403 at 3590.466 kb on + strand, within MPMX20_03403 at 3590.472 kb on - strand, within MPMX20_03403 at 3590.474 kb on - strand, within MPMX20_03403 at 3590.474 kb on - strand, within MPMX20_03403 at 3590.474 kb on - strand, within MPMX20_03403 at 3590.491 kb on + strand, within MPMX20_03403 at 3590.491 kb on + strand, within MPMX20_03403 at 3590.499 kb on - strand, within MPMX20_03403 at 3590.669 kb on + strand, within MPMX20_03403 at 3590.846 kb on - strand, within MPMX20_03403 at 3590.851 kb on + strand, within MPMX20_03403 at 3590.851 kb on + strand, within MPMX20_03403 at 3590.859 kb on - strand, within MPMX20_03403 at 3590.859 kb on - strand, within MPMX20_03403 at 3590.863 kb on + strand, within MPMX20_03403 at 3590.892 kb on - strand, within MPMX20_03403 at 3590.913 kb on - strand, within MPMX20_03403 at 3590.950 kb on - strand at 3591.028 kb on + strand at 3591.064 kb on + strand at 3591.072 kb on - strand at 3591.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,588,445 + -1.3 3,588,445 + +0.8 3,588,445 + -0.7 3,588,448 - -1.9 3,588,448 - +2.1 3,588,448 - -0.0 3,588,448 - -1.2 3,588,592 + +0.7 3,588,600 - +0.7 3,588,780 - MPMX20_03401 0.23 +0.5 3,588,797 - MPMX20_03401 0.25 -0.3 3,588,881 - MPMX20_03401 0.35 -0.6 3,588,982 + MPMX20_03401 0.47 -0.8 3,589,015 - MPMX20_03401 0.51 +1.3 3,589,053 + MPMX20_03401 0.55 -0.3 3,589,061 - MPMX20_03401 0.56 +0.1 3,589,234 + MPMX20_03401 0.76 -0.3 3,589,242 - MPMX20_03401 0.77 -0.7 3,589,298 - MPMX20_03401 0.84 -0.7 3,589,319 - MPMX20_03401 0.86 +0.0 3,589,359 - -0.4 3,589,370 + +0.2 3,589,378 - -1.3 3,589,443 - -0.2 3,589,467 + +0.3 3,589,472 + +0.3 3,589,472 + +0.1 3,589,515 + MPMX20_03402 0.11 -0.6 3,589,536 + MPMX20_03402 0.13 -0.0 3,589,544 - MPMX20_03402 0.14 +1.0 3,589,544 - MPMX20_03402 0.14 -1.2 3,589,569 - MPMX20_03402 0.18 -0.3 3,589,644 + MPMX20_03402 0.27 -0.8 3,589,651 + MPMX20_03402 0.28 -2.0 3,589,651 + MPMX20_03402 0.28 -2.4 3,589,659 - MPMX20_03402 0.29 -0.5 3,589,667 + MPMX20_03402 0.30 -0.5 3,589,693 - MPMX20_03402 0.34 -0.8 3,589,746 + MPMX20_03402 0.41 -1.4 3,589,755 + MPMX20_03402 0.42 +0.9 3,589,755 + MPMX20_03402 0.42 -0.4 3,589,763 + MPMX20_03402 0.43 -1.6 3,589,771 - MPMX20_03402 0.44 +1.0 3,589,773 - MPMX20_03402 0.44 -1.2 3,589,841 - MPMX20_03402 0.53 +0.5 3,589,845 + MPMX20_03402 0.53 -2.3 3,589,852 + MPMX20_03402 0.54 -2.3 3,589,855 - MPMX20_03402 0.55 -1.6 3,589,860 - MPMX20_03402 0.55 -1.4 3,589,887 - MPMX20_03402 0.59 -0.0 3,589,972 - MPMX20_03402 0.70 +0.6 3,589,999 - MPMX20_03402 0.73 +0.7 3,590,005 - MPMX20_03402 0.74 -0.5 3,590,024 + MPMX20_03402 0.77 -0.1 3,590,041 - MPMX20_03402 0.79 -1.4 3,590,466 + MPMX20_03403 0.32 -1.4 3,590,466 + MPMX20_03403 0.32 -0.7 3,590,472 - MPMX20_03403 0.32 -0.4 3,590,474 - MPMX20_03403 0.33 -0.7 3,590,474 - MPMX20_03403 0.33 -0.1 3,590,474 - MPMX20_03403 0.33 -1.6 3,590,491 + MPMX20_03403 0.35 -1.2 3,590,491 + MPMX20_03403 0.35 +0.4 3,590,499 - MPMX20_03403 0.36 +0.7 3,590,669 + MPMX20_03403 0.58 +0.2 3,590,846 - MPMX20_03403 0.80 -1.6 3,590,851 + MPMX20_03403 0.81 +0.2 3,590,851 + MPMX20_03403 0.81 -1.5 3,590,859 - MPMX20_03403 0.82 -0.3 3,590,859 - MPMX20_03403 0.82 +0.2 3,590,863 + MPMX20_03403 0.83 -0.9 3,590,892 - MPMX20_03403 0.86 +1.7 3,590,913 - MPMX20_03403 0.89 +1.1 3,590,950 - -2.5 3,591,028 + -3.0 3,591,064 + -0.5 3,591,072 - -0.3 3,591,075 - -1.7
Or see this region's nucleotide sequence