Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03374 and MPMX20_03375 are separated by 11 nucleotides MPMX20_03375 and MPMX20_03376 are separated by 278 nucleotides
MPMX20_03374: MPMX20_03374 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,551,775 to 3,553,700
_03374
MPMX20_03375: MPMX20_03375 - Putative 3-oxopropanoate dehydrogenase, at 3,553,712 to 3,555,217
_03375
MPMX20_03376: MPMX20_03376 - HTH-type transcriptional regulator MurR, at 3,555,496 to 3,556,326
_03376
Position (kb)
3553
3554
3555
3556 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3552.877 kb on - strand, within MPMX20_03374 at 3552.886 kb on - strand, within MPMX20_03374 at 3552.886 kb on - strand, within MPMX20_03374 at 3553.002 kb on - strand, within MPMX20_03374 at 3553.048 kb on + strand, within MPMX20_03374 at 3553.070 kb on + strand, within MPMX20_03374 at 3553.099 kb on - strand, within MPMX20_03374 at 3553.100 kb on + strand, within MPMX20_03374 at 3553.101 kb on + strand, within MPMX20_03374 at 3553.113 kb on + strand, within MPMX20_03374 at 3553.220 kb on + strand, within MPMX20_03374 at 3553.291 kb on + strand, within MPMX20_03374 at 3553.338 kb on + strand, within MPMX20_03374 at 3553.357 kb on - strand, within MPMX20_03374 at 3553.359 kb on - strand, within MPMX20_03374 at 3553.432 kb on + strand, within MPMX20_03374 at 3553.467 kb on - strand, within MPMX20_03374 at 3553.487 kb on + strand, within MPMX20_03374 at 3553.523 kb on - strand at 3553.523 kb on - strand at 3553.523 kb on - strand at 3553.543 kb on - strand at 3553.646 kb on - strand at 3553.676 kb on - strand at 3553.705 kb on - strand at 3553.705 kb on - strand at 3553.730 kb on + strand at 3553.774 kb on + strand at 3554.005 kb on + strand, within MPMX20_03375 at 3554.018 kb on + strand, within MPMX20_03375 at 3554.018 kb on + strand, within MPMX20_03375 at 3554.026 kb on - strand, within MPMX20_03375 at 3554.026 kb on - strand, within MPMX20_03375 at 3554.026 kb on - strand, within MPMX20_03375 at 3554.088 kb on + strand, within MPMX20_03375 at 3554.115 kb on - strand, within MPMX20_03375 at 3554.115 kb on - strand, within MPMX20_03375 at 3554.115 kb on - strand, within MPMX20_03375 at 3554.161 kb on - strand, within MPMX20_03375 at 3554.164 kb on - strand, within MPMX20_03375 at 3554.202 kb on + strand, within MPMX20_03375 at 3554.207 kb on + strand, within MPMX20_03375 at 3554.215 kb on - strand, within MPMX20_03375 at 3554.217 kb on + strand, within MPMX20_03375 at 3554.217 kb on + strand, within MPMX20_03375 at 3554.225 kb on - strand, within MPMX20_03375 at 3554.225 kb on - strand, within MPMX20_03375 at 3554.235 kb on - strand, within MPMX20_03375 at 3554.270 kb on + strand, within MPMX20_03375 at 3554.270 kb on + strand, within MPMX20_03375 at 3554.278 kb on - strand, within MPMX20_03375 at 3554.329 kb on + strand, within MPMX20_03375 at 3554.337 kb on + strand, within MPMX20_03375 at 3554.345 kb on - strand, within MPMX20_03375 at 3554.393 kb on + strand, within MPMX20_03375 at 3554.500 kb on + strand, within MPMX20_03375 at 3554.536 kb on + strand, within MPMX20_03375 at 3554.544 kb on - strand, within MPMX20_03375 at 3554.544 kb on - strand, within MPMX20_03375 at 3554.572 kb on + strand, within MPMX20_03375 at 3554.611 kb on + strand, within MPMX20_03375 at 3554.646 kb on - strand, within MPMX20_03375 at 3554.832 kb on + strand, within MPMX20_03375 at 3554.849 kb on + strand, within MPMX20_03375 at 3554.904 kb on - strand, within MPMX20_03375 at 3554.969 kb on - strand, within MPMX20_03375 at 3554.974 kb on - strand, within MPMX20_03375 at 3555.011 kb on + strand, within MPMX20_03375 at 3555.019 kb on - strand, within MPMX20_03375 at 3555.024 kb on + strand, within MPMX20_03375 at 3555.097 kb on + strand at 3555.135 kb on - strand at 3555.151 kb on - strand at 3555.166 kb on + strand at 3555.166 kb on + strand at 3555.166 kb on + strand at 3555.166 kb on + strand at 3555.174 kb on - strand at 3555.174 kb on - strand at 3555.174 kb on - strand at 3555.174 kb on - strand at 3555.211 kb on + strand at 3555.218 kb on - strand at 3555.233 kb on + strand at 3555.233 kb on + strand at 3555.520 kb on - strand at 3555.520 kb on - strand at 3555.556 kb on - strand at 3555.589 kb on + strand, within MPMX20_03376 at 3555.589 kb on + strand, within MPMX20_03376 at 3555.858 kb on - strand, within MPMX20_03376 at 3555.898 kb on - strand, within MPMX20_03376 at 3555.946 kb on + strand, within MPMX20_03376 at 3555.967 kb on - strand, within MPMX20_03376 at 3555.990 kb on - strand, within MPMX20_03376 at 3556.010 kb on + strand, within MPMX20_03376 at 3556.010 kb on + strand, within MPMX20_03376 at 3556.018 kb on - strand, within MPMX20_03376 at 3556.069 kb on + strand, within MPMX20_03376 at 3556.106 kb on + strand, within MPMX20_03376 at 3556.168 kb on - strand, within MPMX20_03376
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,552,877 - MPMX20_03374 0.57 +0.3 3,552,886 - MPMX20_03374 0.58 -0.9 3,552,886 - MPMX20_03374 0.58 +0.1 3,553,002 - MPMX20_03374 0.64 -0.0 3,553,048 + MPMX20_03374 0.66 +0.2 3,553,070 + MPMX20_03374 0.67 +0.1 3,553,099 - MPMX20_03374 0.69 -0.2 3,553,100 + MPMX20_03374 0.69 -0.2 3,553,101 + MPMX20_03374 0.69 -0.3 3,553,113 + MPMX20_03374 0.69 -0.3 3,553,220 + MPMX20_03374 0.75 -1.6 3,553,291 + MPMX20_03374 0.79 -0.5 3,553,338 + MPMX20_03374 0.81 +1.5 3,553,357 - MPMX20_03374 0.82 +1.1 3,553,359 - MPMX20_03374 0.82 -1.5 3,553,432 + MPMX20_03374 0.86 +0.1 3,553,467 - MPMX20_03374 0.88 -0.3 3,553,487 + MPMX20_03374 0.89 -1.4 3,553,523 - -1.0 3,553,523 - +0.3 3,553,523 - +2.3 3,553,543 - +0.4 3,553,646 - +0.6 3,553,676 - -0.8 3,553,705 - -0.7 3,553,705 - +0.4 3,553,730 + -0.9 3,553,774 + -0.2 3,554,005 + MPMX20_03375 0.19 -0.3 3,554,018 + MPMX20_03375 0.20 -0.4 3,554,018 + MPMX20_03375 0.20 +0.1 3,554,026 - MPMX20_03375 0.21 -0.5 3,554,026 - MPMX20_03375 0.21 -0.7 3,554,026 - MPMX20_03375 0.21 +1.4 3,554,088 + MPMX20_03375 0.25 -0.2 3,554,115 - MPMX20_03375 0.27 +0.8 3,554,115 - MPMX20_03375 0.27 +0.1 3,554,115 - MPMX20_03375 0.27 +0.5 3,554,161 - MPMX20_03375 0.30 -0.9 3,554,164 - MPMX20_03375 0.30 +0.1 3,554,202 + MPMX20_03375 0.33 +0.1 3,554,207 + MPMX20_03375 0.33 +0.7 3,554,215 - MPMX20_03375 0.33 -0.0 3,554,217 + MPMX20_03375 0.34 -2.0 3,554,217 + MPMX20_03375 0.34 -0.1 3,554,225 - MPMX20_03375 0.34 -0.2 3,554,225 - MPMX20_03375 0.34 +0.7 3,554,235 - MPMX20_03375 0.35 +1.3 3,554,270 + MPMX20_03375 0.37 +0.3 3,554,270 + MPMX20_03375 0.37 -2.4 3,554,278 - MPMX20_03375 0.38 -0.9 3,554,329 + MPMX20_03375 0.41 -1.6 3,554,337 + MPMX20_03375 0.42 -1.5 3,554,345 - MPMX20_03375 0.42 +0.1 3,554,393 + MPMX20_03375 0.45 -0.9 3,554,500 + MPMX20_03375 0.52 -0.7 3,554,536 + MPMX20_03375 0.55 -1.9 3,554,544 - MPMX20_03375 0.55 -0.8 3,554,544 - MPMX20_03375 0.55 -1.1 3,554,572 + MPMX20_03375 0.57 -0.2 3,554,611 + MPMX20_03375 0.60 +0.3 3,554,646 - MPMX20_03375 0.62 -1.6 3,554,832 + MPMX20_03375 0.74 -0.7 3,554,849 + MPMX20_03375 0.75 +2.9 3,554,904 - MPMX20_03375 0.79 +0.4 3,554,969 - MPMX20_03375 0.83 -1.9 3,554,974 - MPMX20_03375 0.84 +1.3 3,555,011 + MPMX20_03375 0.86 -0.3 3,555,019 - MPMX20_03375 0.87 -0.4 3,555,024 + MPMX20_03375 0.87 -1.0 3,555,097 + -0.0 3,555,135 - +0.9 3,555,151 - -0.6 3,555,166 + -0.8 3,555,166 + -0.2 3,555,166 + -1.1 3,555,166 + +0.6 3,555,174 - -1.6 3,555,174 - +2.3 3,555,174 - -0.0 3,555,174 - +1.7 3,555,211 + -1.4 3,555,218 - +1.1 3,555,233 + +0.7 3,555,233 + -1.5 3,555,520 - -0.7 3,555,520 - -1.9 3,555,556 - -0.0 3,555,589 + MPMX20_03376 0.11 -1.1 3,555,589 + MPMX20_03376 0.11 +0.3 3,555,858 - MPMX20_03376 0.44 +2.3 3,555,898 - MPMX20_03376 0.48 +0.9 3,555,946 + MPMX20_03376 0.54 -2.6 3,555,967 - MPMX20_03376 0.57 -1.4 3,555,990 - MPMX20_03376 0.59 -1.9 3,556,010 + MPMX20_03376 0.62 -0.9 3,556,010 + MPMX20_03376 0.62 -0.2 3,556,018 - MPMX20_03376 0.63 -3.2 3,556,069 + MPMX20_03376 0.69 -2.8 3,556,106 + MPMX20_03376 0.73 -2.4 3,556,168 - MPMX20_03376 0.81 -1.7
Or see this region's nucleotide sequence