Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03372 and MPMX20_03373 are separated by 31 nucleotides MPMX20_03373 and MPMX20_03374 are separated by 290 nucleotides
MPMX20_03372: MPMX20_03372 - Ribose import binding protein RbsB, at 3,549,537 to 3,550,466
_03372
MPMX20_03373: MPMX20_03373 - Myo-inositol 2-dehydrogenase, at 3,550,498 to 3,551,484
_03373
MPMX20_03374: MPMX20_03374 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,551,775 to 3,553,700
_03374
Position (kb)
3550
3551
3552 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3549.503 kb on - strand at 3549.507 kb on + strand at 3549.508 kb on - strand at 3549.598 kb on + strand at 3549.644 kb on - strand, within MPMX20_03372 at 3549.784 kb on + strand, within MPMX20_03372 at 3549.839 kb on + strand, within MPMX20_03372 at 3549.840 kb on + strand, within MPMX20_03372 at 3549.847 kb on - strand, within MPMX20_03372 at 3549.896 kb on + strand, within MPMX20_03372 at 3549.934 kb on + strand, within MPMX20_03372 at 3549.956 kb on + strand, within MPMX20_03372 at 3549.956 kb on + strand, within MPMX20_03372 at 3549.984 kb on - strand, within MPMX20_03372 at 3550.084 kb on + strand, within MPMX20_03372 at 3550.139 kb on + strand, within MPMX20_03372 at 3550.147 kb on - strand, within MPMX20_03372 at 3550.211 kb on - strand, within MPMX20_03372 at 3550.235 kb on - strand, within MPMX20_03372 at 3550.284 kb on + strand, within MPMX20_03372 at 3550.284 kb on + strand, within MPMX20_03372 at 3550.287 kb on - strand, within MPMX20_03372 at 3550.307 kb on + strand, within MPMX20_03372 at 3550.307 kb on + strand, within MPMX20_03372 at 3550.376 kb on + strand at 3550.481 kb on + strand at 3550.481 kb on + strand at 3550.481 kb on + strand at 3550.489 kb on - strand at 3550.489 kb on - strand at 3550.489 kb on - strand at 3550.489 kb on - strand at 3550.499 kb on - strand at 3550.654 kb on - strand, within MPMX20_03373 at 3550.752 kb on + strand, within MPMX20_03373 at 3550.752 kb on + strand, within MPMX20_03373 at 3550.760 kb on - strand, within MPMX20_03373 at 3550.760 kb on - strand, within MPMX20_03373 at 3550.760 kb on - strand, within MPMX20_03373 at 3550.767 kb on + strand, within MPMX20_03373 at 3550.914 kb on - strand, within MPMX20_03373 at 3551.039 kb on - strand, within MPMX20_03373 at 3551.039 kb on - strand, within MPMX20_03373 at 3551.086 kb on - strand, within MPMX20_03373 at 3551.200 kb on - strand, within MPMX20_03373 at 3551.201 kb on - strand, within MPMX20_03373 at 3551.269 kb on + strand, within MPMX20_03373 at 3551.287 kb on - strand, within MPMX20_03373 at 3551.322 kb on + strand, within MPMX20_03373 at 3551.322 kb on + strand, within MPMX20_03373 at 3551.323 kb on + strand, within MPMX20_03373 at 3551.330 kb on - strand, within MPMX20_03373 at 3551.331 kb on - strand, within MPMX20_03373 at 3551.332 kb on + strand, within MPMX20_03373 at 3551.340 kb on - strand, within MPMX20_03373 at 3551.391 kb on + strand at 3551.399 kb on - strand at 3551.399 kb on - strand at 3551.408 kb on + strand at 3551.408 kb on + strand at 3551.416 kb on - strand at 3551.459 kb on + strand at 3551.501 kb on + strand at 3551.698 kb on + strand at 3551.925 kb on + strand at 3551.939 kb on - strand at 3552.034 kb on + strand, within MPMX20_03374 at 3552.118 kb on + strand, within MPMX20_03374 at 3552.173 kb on + strand, within MPMX20_03374 at 3552.221 kb on + strand, within MPMX20_03374 at 3552.252 kb on - strand, within MPMX20_03374 at 3552.297 kb on + strand, within MPMX20_03374 at 3552.305 kb on - strand, within MPMX20_03374 at 3552.318 kb on + strand, within MPMX20_03374 at 3552.320 kb on - strand, within MPMX20_03374 at 3552.326 kb on - strand, within MPMX20_03374 at 3552.368 kb on + strand, within MPMX20_03374 at 3552.381 kb on - strand, within MPMX20_03374 at 3552.468 kb on - strand, within MPMX20_03374
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,549,503 - +2.3 3,549,507 + -0.7 3,549,508 - -1.3 3,549,598 + -2.5 3,549,644 - MPMX20_03372 0.12 +0.4 3,549,784 + MPMX20_03372 0.27 -1.8 3,549,839 + MPMX20_03372 0.32 -1.3 3,549,840 + MPMX20_03372 0.33 +0.3 3,549,847 - MPMX20_03372 0.33 -0.4 3,549,896 + MPMX20_03372 0.39 -0.0 3,549,934 + MPMX20_03372 0.43 -2.4 3,549,956 + MPMX20_03372 0.45 -0.5 3,549,956 + MPMX20_03372 0.45 +0.9 3,549,984 - MPMX20_03372 0.48 -0.4 3,550,084 + MPMX20_03372 0.59 -0.8 3,550,139 + MPMX20_03372 0.65 +0.3 3,550,147 - MPMX20_03372 0.66 -0.0 3,550,211 - MPMX20_03372 0.72 -0.3 3,550,235 - MPMX20_03372 0.75 -0.2 3,550,284 + MPMX20_03372 0.80 -1.4 3,550,284 + MPMX20_03372 0.80 +0.9 3,550,287 - MPMX20_03372 0.81 -0.5 3,550,307 + MPMX20_03372 0.83 +1.5 3,550,307 + MPMX20_03372 0.83 +0.9 3,550,376 + -0.0 3,550,481 + -0.5 3,550,481 + -1.3 3,550,481 + -0.9 3,550,489 - -0.7 3,550,489 - +2.3 3,550,489 - +2.3 3,550,489 - +1.3 3,550,499 - -1.4 3,550,654 - MPMX20_03373 0.16 -0.1 3,550,752 + MPMX20_03373 0.26 -3.0 3,550,752 + MPMX20_03373 0.26 +2.3 3,550,760 - MPMX20_03373 0.27 +0.2 3,550,760 - MPMX20_03373 0.27 -0.4 3,550,760 - MPMX20_03373 0.27 +4.5 3,550,767 + MPMX20_03373 0.27 -1.1 3,550,914 - MPMX20_03373 0.42 -1.3 3,551,039 - MPMX20_03373 0.55 -1.0 3,551,039 - MPMX20_03373 0.55 +0.1 3,551,086 - MPMX20_03373 0.60 -2.0 3,551,200 - MPMX20_03373 0.71 -0.4 3,551,201 - MPMX20_03373 0.71 +2.5 3,551,269 + MPMX20_03373 0.78 +0.3 3,551,287 - MPMX20_03373 0.80 -0.8 3,551,322 + MPMX20_03373 0.83 +0.1 3,551,322 + MPMX20_03373 0.83 +1.0 3,551,323 + MPMX20_03373 0.84 +0.5 3,551,330 - MPMX20_03373 0.84 -0.7 3,551,331 - MPMX20_03373 0.84 -1.3 3,551,332 + MPMX20_03373 0.84 +0.5 3,551,340 - MPMX20_03373 0.85 -0.9 3,551,391 + +0.4 3,551,399 - +0.2 3,551,399 - +0.4 3,551,408 + -2.3 3,551,408 + +0.2 3,551,416 - -0.6 3,551,459 + -2.6 3,551,501 + -1.5 3,551,698 + -0.6 3,551,925 + -0.5 3,551,939 - -0.1 3,552,034 + MPMX20_03374 0.13 +2.5 3,552,118 + MPMX20_03374 0.18 +2.3 3,552,173 + MPMX20_03374 0.21 +0.5 3,552,221 + MPMX20_03374 0.23 -1.0 3,552,252 - MPMX20_03374 0.25 +0.8 3,552,297 + MPMX20_03374 0.27 -0.1 3,552,305 - MPMX20_03374 0.28 +0.3 3,552,318 + MPMX20_03374 0.28 -0.4 3,552,320 - MPMX20_03374 0.28 +1.3 3,552,326 - MPMX20_03374 0.29 -0.3 3,552,368 + MPMX20_03374 0.31 -0.7 3,552,381 - MPMX20_03374 0.31 -1.1 3,552,468 - MPMX20_03374 0.36 +7.9
Or see this region's nucleotide sequence