Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03269 and MPMX20_03270 are separated by 239 nucleotides MPMX20_03270 and MPMX20_03271 are separated by 372 nucleotides MPMX20_03271 and MPMX20_03272 are separated by 44 nucleotides
MPMX20_03269: MPMX20_03269 - 3-ketoacyl-CoA thiolase FadI, at 3,439,952 to 3,441,262
_03269
MPMX20_03270: MPMX20_03270 - hypothetical protein, at 3,441,502 to 3,441,786
_03270
MPMX20_03271: MPMX20_03271 - Long-chain fatty acid transport protein, at 3,442,159 to 3,443,487
_03271
MPMX20_03272: MPMX20_03272 - Intermembrane phospholipid transport system lipoprotein MlaA, at 3,443,532 to 3,444,284
_03272
Position (kb)
3442
3443
3444 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3441.251 kb on + strand at 3441.258 kb on + strand at 3441.258 kb on + strand at 3441.266 kb on - strand at 3441.266 kb on - strand at 3441.272 kb on - strand at 3441.493 kb on + strand at 3441.503 kb on - strand at 3441.505 kb on + strand at 3441.505 kb on + strand at 3441.505 kb on + strand at 3441.505 kb on + strand at 3441.580 kb on + strand, within MPMX20_03270 at 3441.615 kb on + strand, within MPMX20_03270 at 3441.620 kb on + strand, within MPMX20_03270 at 3441.620 kb on + strand, within MPMX20_03270 at 3441.638 kb on + strand, within MPMX20_03270 at 3441.666 kb on - strand, within MPMX20_03270 at 3441.687 kb on + strand, within MPMX20_03270 at 3441.823 kb on - strand at 3441.847 kb on + strand at 3441.866 kb on - strand at 3441.868 kb on + strand at 3442.042 kb on + strand at 3442.042 kb on + strand at 3442.045 kb on - strand at 3442.045 kb on - strand at 3442.050 kb on - strand at 3442.081 kb on + strand at 3442.081 kb on + strand at 3442.087 kb on + strand at 3442.087 kb on + strand at 3442.089 kb on - strand at 3442.095 kb on - strand at 3442.095 kb on - strand at 3442.095 kb on - strand at 3442.095 kb on - strand at 3442.157 kb on - strand at 3442.157 kb on - strand at 3442.202 kb on - strand at 3442.224 kb on + strand at 3442.267 kb on + strand at 3442.267 kb on + strand at 3442.275 kb on - strand at 3442.303 kb on - strand, within MPMX20_03271 at 3442.339 kb on - strand, within MPMX20_03271 at 3442.484 kb on - strand, within MPMX20_03271 at 3442.514 kb on - strand, within MPMX20_03271 at 3442.528 kb on - strand, within MPMX20_03271 at 3442.544 kb on - strand, within MPMX20_03271 at 3442.615 kb on - strand, within MPMX20_03271 at 3442.622 kb on - strand, within MPMX20_03271 at 3442.631 kb on - strand, within MPMX20_03271 at 3442.743 kb on - strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.812 kb on + strand, within MPMX20_03271 at 3442.820 kb on - strand, within MPMX20_03271 at 3442.820 kb on - strand, within MPMX20_03271 at 3442.820 kb on - strand, within MPMX20_03271 at 3442.847 kb on + strand, within MPMX20_03271 at 3442.855 kb on - strand, within MPMX20_03271 at 3442.855 kb on - strand, within MPMX20_03271 at 3442.855 kb on - strand, within MPMX20_03271 at 3442.944 kb on + strand, within MPMX20_03271 at 3442.952 kb on - strand, within MPMX20_03271 at 3442.952 kb on - strand, within MPMX20_03271 at 3442.966 kb on - strand, within MPMX20_03271 at 3442.981 kb on - strand, within MPMX20_03271 at 3443.026 kb on - strand, within MPMX20_03271 at 3443.086 kb on + strand, within MPMX20_03271 at 3443.086 kb on + strand, within MPMX20_03271 at 3443.094 kb on - strand, within MPMX20_03271 at 3443.094 kb on - strand, within MPMX20_03271 at 3443.095 kb on + strand, within MPMX20_03271 at 3443.095 kb on + strand, within MPMX20_03271 at 3443.100 kb on + strand, within MPMX20_03271 at 3443.103 kb on - strand, within MPMX20_03271 at 3443.103 kb on - strand, within MPMX20_03271 at 3443.103 kb on - strand, within MPMX20_03271 at 3443.103 kb on - strand, within MPMX20_03271 at 3443.130 kb on + strand, within MPMX20_03271 at 3443.208 kb on + strand, within MPMX20_03271 at 3443.216 kb on - strand, within MPMX20_03271 at 3443.216 kb on - strand, within MPMX20_03271 at 3443.216 kb on - strand, within MPMX20_03271 at 3443.224 kb on + strand, within MPMX20_03271 at 3443.232 kb on + strand, within MPMX20_03271 at 3443.259 kb on - strand, within MPMX20_03271 at 3443.321 kb on - strand, within MPMX20_03271 at 3443.335 kb on + strand, within MPMX20_03271 at 3443.338 kb on - strand, within MPMX20_03271 at 3443.341 kb on + strand, within MPMX20_03271 at 3443.416 kb on - strand at 3443.438 kb on - strand at 3443.438 kb on - strand at 3443.443 kb on + strand at 3443.443 kb on + strand at 3443.443 kb on + strand at 3443.443 kb on + strand at 3443.443 kb on + strand at 3443.444 kb on + strand at 3443.451 kb on - strand at 3443.462 kb on + strand at 3443.497 kb on + strand at 3443.505 kb on - strand at 3443.671 kb on - strand, within MPMX20_03272 at 3443.671 kb on - strand, within MPMX20_03272 at 3443.721 kb on + strand, within MPMX20_03272 at 3443.727 kb on - strand, within MPMX20_03272 at 3443.729 kb on - strand, within MPMX20_03272 at 3443.771 kb on + strand, within MPMX20_03272 at 3444.015 kb on + strand, within MPMX20_03272 at 3444.020 kb on + strand, within MPMX20_03272 at 3444.020 kb on + strand, within MPMX20_03272 at 3444.028 kb on - strand, within MPMX20_03272 at 3444.050 kb on + strand, within MPMX20_03272 at 3444.165 kb on + strand, within MPMX20_03272 at 3444.166 kb on - strand, within MPMX20_03272 at 3444.173 kb on - strand, within MPMX20_03272 at 3444.173 kb on - strand, within MPMX20_03272 at 3444.188 kb on - strand, within MPMX20_03272 at 3444.196 kb on + strand, within MPMX20_03272 at 3444.204 kb on - strand, within MPMX20_03272 at 3444.226 kb on - strand at 3444.226 kb on - strand at 3444.234 kb on + strand at 3444.305 kb on - strand at 3444.333 kb on + strand at 3444.333 kb on - strand at 3444.341 kb on - strand at 3444.404 kb on + strand at 3444.404 kb on + strand at 3444.426 kb on + strand at 3444.431 kb on + strand at 3444.433 kb on + strand at 3444.434 kb on - strand at 3444.436 kb on + strand at 3444.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,441,251 + +0.3 3,441,258 + +0.8 3,441,258 + +1.4 3,441,266 - -2.0 3,441,266 - +0.4 3,441,272 - -0.9 3,441,493 + -0.4 3,441,503 - -1.3 3,441,505 + +3.4 3,441,505 + -1.1 3,441,505 + -1.0 3,441,505 + +0.4 3,441,580 + MPMX20_03270 0.27 -0.2 3,441,615 + MPMX20_03270 0.40 -0.0 3,441,620 + MPMX20_03270 0.41 -0.3 3,441,620 + MPMX20_03270 0.41 +0.8 3,441,638 + MPMX20_03270 0.48 +0.0 3,441,666 - MPMX20_03270 0.58 -0.3 3,441,687 + MPMX20_03270 0.65 +6.3 3,441,823 - +0.0 3,441,847 + +0.4 3,441,866 - -1.8 3,441,868 + +0.6 3,442,042 + -0.0 3,442,042 + +0.2 3,442,045 - +1.4 3,442,045 - -1.0 3,442,050 - +0.0 3,442,081 + +0.2 3,442,081 + -0.6 3,442,087 + -1.5 3,442,087 + -0.5 3,442,089 - +1.4 3,442,095 - +0.8 3,442,095 - -0.4 3,442,095 - -0.7 3,442,095 - +0.0 3,442,157 - +1.0 3,442,157 - -2.0 3,442,202 - +0.0 3,442,224 + -1.7 3,442,267 + +1.0 3,442,267 + -0.8 3,442,275 - -0.7 3,442,303 - MPMX20_03271 0.11 -0.2 3,442,339 - MPMX20_03271 0.14 -0.2 3,442,484 - MPMX20_03271 0.24 -1.2 3,442,514 - MPMX20_03271 0.27 +0.3 3,442,528 - MPMX20_03271 0.28 +0.3 3,442,544 - MPMX20_03271 0.29 -0.4 3,442,615 - MPMX20_03271 0.34 +2.6 3,442,622 - MPMX20_03271 0.35 -1.0 3,442,631 - MPMX20_03271 0.36 +0.4 3,442,743 - MPMX20_03271 0.44 +0.8 3,442,812 + MPMX20_03271 0.49 -0.9 3,442,812 + MPMX20_03271 0.49 -2.2 3,442,812 + MPMX20_03271 0.49 -0.5 3,442,812 + MPMX20_03271 0.49 -0.4 3,442,812 + MPMX20_03271 0.49 -0.9 3,442,812 + MPMX20_03271 0.49 +1.6 3,442,812 + MPMX20_03271 0.49 -1.4 3,442,812 + MPMX20_03271 0.49 -2.2 3,442,812 + MPMX20_03271 0.49 -0.8 3,442,820 - MPMX20_03271 0.50 -0.5 3,442,820 - MPMX20_03271 0.50 +1.3 3,442,820 - MPMX20_03271 0.50 -1.7 3,442,847 + MPMX20_03271 0.52 -1.2 3,442,855 - MPMX20_03271 0.52 -0.0 3,442,855 - MPMX20_03271 0.52 +1.4 3,442,855 - MPMX20_03271 0.52 -1.2 3,442,944 + MPMX20_03271 0.59 +1.6 3,442,952 - MPMX20_03271 0.60 -1.3 3,442,952 - MPMX20_03271 0.60 -1.6 3,442,966 - MPMX20_03271 0.61 -1.9 3,442,981 - MPMX20_03271 0.62 -2.3 3,443,026 - MPMX20_03271 0.65 -1.5 3,443,086 + MPMX20_03271 0.70 +0.5 3,443,086 + MPMX20_03271 0.70 -1.1 3,443,094 - MPMX20_03271 0.70 -2.2 3,443,094 - MPMX20_03271 0.70 -1.9 3,443,095 + MPMX20_03271 0.70 -0.4 3,443,095 + MPMX20_03271 0.70 +0.8 3,443,100 + MPMX20_03271 0.71 -1.9 3,443,103 - MPMX20_03271 0.71 +1.5 3,443,103 - MPMX20_03271 0.71 +0.3 3,443,103 - MPMX20_03271 0.71 -1.9 3,443,103 - MPMX20_03271 0.71 -0.6 3,443,130 + MPMX20_03271 0.73 +0.5 3,443,208 + MPMX20_03271 0.79 +0.8 3,443,216 - MPMX20_03271 0.80 -0.1 3,443,216 - MPMX20_03271 0.80 -1.1 3,443,216 - MPMX20_03271 0.80 +1.5 3,443,224 + MPMX20_03271 0.80 -0.2 3,443,232 + MPMX20_03271 0.81 +0.2 3,443,259 - MPMX20_03271 0.83 -0.3 3,443,321 - MPMX20_03271 0.87 -0.0 3,443,335 + MPMX20_03271 0.88 -0.8 3,443,338 - MPMX20_03271 0.89 +0.6 3,443,341 + MPMX20_03271 0.89 +0.6 3,443,416 - +0.0 3,443,438 - -1.3 3,443,438 - -0.2 3,443,443 + -1.9 3,443,443 + -0.2 3,443,443 + -1.5 3,443,443 + +0.8 3,443,443 + -1.0 3,443,444 + -0.2 3,443,451 - +0.5 3,443,462 + +0.5 3,443,497 + +3.4 3,443,505 - +1.1 3,443,671 - MPMX20_03272 0.18 -0.4 3,443,671 - MPMX20_03272 0.18 -2.0 3,443,721 + MPMX20_03272 0.25 -0.2 3,443,727 - MPMX20_03272 0.26 -0.4 3,443,729 - MPMX20_03272 0.26 -0.2 3,443,771 + MPMX20_03272 0.32 -1.5 3,444,015 + MPMX20_03272 0.64 +1.4 3,444,020 + MPMX20_03272 0.65 +0.8 3,444,020 + MPMX20_03272 0.65 +0.4 3,444,028 - MPMX20_03272 0.66 +0.4 3,444,050 + MPMX20_03272 0.69 +0.0 3,444,165 + MPMX20_03272 0.84 -0.4 3,444,166 - MPMX20_03272 0.84 -1.9 3,444,173 - MPMX20_03272 0.85 +0.3 3,444,173 - MPMX20_03272 0.85 +0.0 3,444,188 - MPMX20_03272 0.87 -1.5 3,444,196 + MPMX20_03272 0.88 -0.7 3,444,204 - MPMX20_03272 0.89 -2.5 3,444,226 - -0.7 3,444,226 - -0.7 3,444,234 + -0.3 3,444,305 - -2.0 3,444,333 + +0.5 3,444,333 - +0.0 3,444,341 - +0.0 3,444,404 + +2.0 3,444,404 + +0.6 3,444,426 + +0.3 3,444,431 + +0.2 3,444,433 + -2.0 3,444,434 - -0.8 3,444,436 + -1.9 3,444,446 - +0.0
Or see this region's nucleotide sequence