Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03169 and MPMX20_03170 overlap by 38 nucleotides MPMX20_03170 and MPMX20_03171 are separated by 146 nucleotides
MPMX20_03169: MPMX20_03169 - hypothetical protein, at 3,327,701 to 3,329,038
_03169
MPMX20_03170: MPMX20_03170 - Magnesium transporter MgtE, at 3,329,001 to 3,330,437
_03170
MPMX20_03171: MPMX20_03171 - ABC transporter ATP-binding/permease protein YojI, at 3,330,584 to 3,332,227
_03171
Position (kb)
3329
3330
3331 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3328.001 kb on - strand, within MPMX20_03169 at 3328.001 kb on - strand, within MPMX20_03169 at 3328.076 kb on - strand, within MPMX20_03169 at 3328.085 kb on - strand, within MPMX20_03169 at 3328.091 kb on + strand, within MPMX20_03169 at 3328.313 kb on - strand, within MPMX20_03169 at 3328.361 kb on + strand, within MPMX20_03169 at 3328.364 kb on - strand, within MPMX20_03169 at 3328.369 kb on - strand, within MPMX20_03169 at 3328.451 kb on - strand, within MPMX20_03169 at 3328.607 kb on - strand, within MPMX20_03169 at 3328.607 kb on - strand, within MPMX20_03169 at 3328.612 kb on - strand, within MPMX20_03169 at 3328.621 kb on + strand, within MPMX20_03169 at 3328.643 kb on - strand, within MPMX20_03169 at 3328.683 kb on + strand, within MPMX20_03169 at 3328.684 kb on - strand, within MPMX20_03169 at 3328.708 kb on - strand, within MPMX20_03169 at 3328.745 kb on + strand, within MPMX20_03169 at 3328.889 kb on + strand, within MPMX20_03169 at 3328.951 kb on + strand at 3328.959 kb on - strand at 3328.969 kb on - strand at 3329.106 kb on - strand at 3329.106 kb on - strand at 3329.195 kb on - strand, within MPMX20_03170 at 3329.210 kb on + strand, within MPMX20_03170 at 3329.273 kb on + strand, within MPMX20_03170 at 3329.276 kb on + strand, within MPMX20_03170 at 3329.311 kb on + strand, within MPMX20_03170 at 3329.314 kb on - strand, within MPMX20_03170 at 3329.346 kb on + strand, within MPMX20_03170 at 3329.447 kb on + strand, within MPMX20_03170 at 3329.455 kb on - strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.467 kb on + strand, within MPMX20_03170 at 3329.474 kb on + strand, within MPMX20_03170 at 3329.474 kb on + strand, within MPMX20_03170 at 3329.474 kb on + strand, within MPMX20_03170 at 3329.474 kb on + strand, within MPMX20_03170 at 3329.475 kb on - strand, within MPMX20_03170 at 3329.475 kb on - strand, within MPMX20_03170 at 3329.482 kb on - strand, within MPMX20_03170 at 3329.482 kb on - strand, within MPMX20_03170 at 3329.651 kb on - strand, within MPMX20_03170 at 3329.807 kb on + strand, within MPMX20_03170 at 3329.809 kb on + strand, within MPMX20_03170 at 3329.815 kb on - strand, within MPMX20_03170 at 3329.817 kb on - strand, within MPMX20_03170 at 3329.824 kb on + strand, within MPMX20_03170 at 3329.842 kb on - strand, within MPMX20_03170 at 3329.957 kb on - strand, within MPMX20_03170 at 3330.039 kb on + strand, within MPMX20_03170 at 3330.047 kb on - strand, within MPMX20_03170 at 3330.153 kb on - strand, within MPMX20_03170 at 3330.314 kb on + strand at 3330.327 kb on - strand at 3330.328 kb on + strand at 3330.341 kb on + strand at 3330.349 kb on - strand at 3330.401 kb on - strand at 3330.407 kb on + strand at 3330.415 kb on - strand at 3330.472 kb on - strand at 3330.479 kb on - strand at 3330.484 kb on - strand at 3330.578 kb on - strand at 3330.604 kb on + strand at 3330.636 kb on - strand at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.963 kb on + strand, within MPMX20_03171 at 3330.971 kb on + strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3330.971 kb on - strand, within MPMX20_03171 at 3331.064 kb on + strand, within MPMX20_03171 at 3331.077 kb on - strand, within MPMX20_03171 at 3331.245 kb on + strand, within MPMX20_03171 at 3331.245 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.255 kb on + strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.263 kb on - strand, within MPMX20_03171 at 3331.281 kb on + strand, within MPMX20_03171 at 3331.302 kb on + strand, within MPMX20_03171 at 3331.310 kb on - strand, within MPMX20_03171 at 3331.341 kb on + strand, within MPMX20_03171 at 3331.391 kb on - strand, within MPMX20_03171 at 3331.391 kb on - strand, within MPMX20_03171 at 3331.391 kb on - strand, within MPMX20_03171
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,328,001 - MPMX20_03169 0.22 -0.2 3,328,001 - MPMX20_03169 0.22 -1.5 3,328,076 - MPMX20_03169 0.28 -1.3 3,328,085 - MPMX20_03169 0.29 +0.5 3,328,091 + MPMX20_03169 0.29 -0.5 3,328,313 - MPMX20_03169 0.46 +1.3 3,328,361 + MPMX20_03169 0.49 +2.0 3,328,364 - MPMX20_03169 0.50 -0.2 3,328,369 - MPMX20_03169 0.50 -0.8 3,328,451 - MPMX20_03169 0.56 -0.3 3,328,607 - MPMX20_03169 0.68 +0.6 3,328,607 - MPMX20_03169 0.68 +1.0 3,328,612 - MPMX20_03169 0.68 +0.4 3,328,621 + MPMX20_03169 0.69 -1.5 3,328,643 - MPMX20_03169 0.70 -1.9 3,328,683 + MPMX20_03169 0.73 +1.9 3,328,684 - MPMX20_03169 0.73 -0.1 3,328,708 - MPMX20_03169 0.75 -0.5 3,328,745 + MPMX20_03169 0.78 -0.2 3,328,889 + MPMX20_03169 0.89 +2.0 3,328,951 + +0.5 3,328,959 - -0.4 3,328,969 - -0.4 3,329,106 - -0.2 3,329,106 - -1.3 3,329,195 - MPMX20_03170 0.14 -1.5 3,329,210 + MPMX20_03170 0.15 -1.2 3,329,273 + MPMX20_03170 0.19 -1.4 3,329,276 + MPMX20_03170 0.19 +0.6 3,329,311 + MPMX20_03170 0.22 -2.4 3,329,314 - MPMX20_03170 0.22 -1.9 3,329,346 + MPMX20_03170 0.24 -0.4 3,329,447 + MPMX20_03170 0.31 -0.3 3,329,455 - MPMX20_03170 0.32 -2.1 3,329,467 + MPMX20_03170 0.32 -0.4 3,329,467 + MPMX20_03170 0.32 -0.9 3,329,467 + MPMX20_03170 0.32 -1.8 3,329,467 + MPMX20_03170 0.32 -1.2 3,329,467 + MPMX20_03170 0.32 -0.6 3,329,467 + MPMX20_03170 0.32 +0.0 3,329,467 + MPMX20_03170 0.32 +0.2 3,329,474 + MPMX20_03170 0.33 -2.1 3,329,474 + MPMX20_03170 0.33 -1.5 3,329,474 + MPMX20_03170 0.33 -2.7 3,329,474 + MPMX20_03170 0.33 -1.9 3,329,475 - MPMX20_03170 0.33 -1.3 3,329,475 - MPMX20_03170 0.33 -0.1 3,329,482 - MPMX20_03170 0.33 +0.2 3,329,482 - MPMX20_03170 0.33 +2.6 3,329,651 - MPMX20_03170 0.45 +0.6 3,329,807 + MPMX20_03170 0.56 -0.0 3,329,809 + MPMX20_03170 0.56 -0.7 3,329,815 - MPMX20_03170 0.57 +2.4 3,329,817 - MPMX20_03170 0.57 -0.6 3,329,824 + MPMX20_03170 0.57 -0.2 3,329,842 - MPMX20_03170 0.59 +2.7 3,329,957 - MPMX20_03170 0.67 -1.9 3,330,039 + MPMX20_03170 0.72 -1.5 3,330,047 - MPMX20_03170 0.73 -0.9 3,330,153 - MPMX20_03170 0.80 +0.3 3,330,314 + -0.9 3,330,327 - +0.3 3,330,328 + -0.6 3,330,341 + -0.4 3,330,349 - -0.2 3,330,401 - -1.7 3,330,407 + -0.4 3,330,415 - +0.6 3,330,472 - -1.9 3,330,479 - +0.2 3,330,484 - -1.3 3,330,578 - +0.4 3,330,604 + -0.9 3,330,636 - +3.4 3,330,963 + MPMX20_03171 0.23 +1.2 3,330,963 + MPMX20_03171 0.23 -0.6 3,330,963 + MPMX20_03171 0.23 +0.3 3,330,963 + MPMX20_03171 0.23 -0.9 3,330,963 + MPMX20_03171 0.23 -0.6 3,330,963 + MPMX20_03171 0.23 +0.1 3,330,971 + MPMX20_03171 0.24 +1.2 3,330,971 - MPMX20_03171 0.24 +0.1 3,330,971 - MPMX20_03171 0.24 -1.2 3,330,971 - MPMX20_03171 0.24 +0.1 3,330,971 - MPMX20_03171 0.24 -0.9 3,330,971 - MPMX20_03171 0.24 -2.2 3,330,971 - MPMX20_03171 0.24 -1.2 3,331,064 + MPMX20_03171 0.29 -0.6 3,331,077 - MPMX20_03171 0.30 -2.7 3,331,245 + MPMX20_03171 0.40 -0.8 3,331,245 + MPMX20_03171 0.40 -1.4 3,331,255 + MPMX20_03171 0.41 +0.7 3,331,255 + MPMX20_03171 0.41 -1.1 3,331,255 + MPMX20_03171 0.41 +1.1 3,331,255 + MPMX20_03171 0.41 -0.9 3,331,255 + MPMX20_03171 0.41 +6.6 3,331,255 + MPMX20_03171 0.41 -0.9 3,331,255 + MPMX20_03171 0.41 -0.1 3,331,255 + MPMX20_03171 0.41 +1.6 3,331,255 + MPMX20_03171 0.41 -1.0 3,331,263 - MPMX20_03171 0.41 +2.4 3,331,263 - MPMX20_03171 0.41 +1.4 3,331,263 - MPMX20_03171 0.41 +0.6 3,331,263 - MPMX20_03171 0.41 +0.1 3,331,263 - MPMX20_03171 0.41 +0.6 3,331,263 - MPMX20_03171 0.41 -0.8 3,331,263 - MPMX20_03171 0.41 +4.4 3,331,263 - MPMX20_03171 0.41 -1.5 3,331,263 - MPMX20_03171 0.41 +0.7 3,331,263 - MPMX20_03171 0.41 -0.6 3,331,281 + MPMX20_03171 0.42 -1.2 3,331,302 + MPMX20_03171 0.44 +0.5 3,331,310 - MPMX20_03171 0.44 +0.8 3,331,341 + MPMX20_03171 0.46 -1.1 3,331,391 - MPMX20_03171 0.49 -0.1 3,331,391 - MPMX20_03171 0.49 +0.1 3,331,391 - MPMX20_03171 0.49 -0.0
Or see this region's nucleotide sequence