Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03126 and MPMX20_03127 are separated by 53 nucleotides MPMX20_03127 and MPMX20_03128 are separated by 171 nucleotides
MPMX20_03126: MPMX20_03126 - Colicin I receptor, at 3,283,389 to 3,285,374
_03126
MPMX20_03127: MPMX20_03127 - Lysine-specific permease, at 3,285,428 to 3,286,897
_03127
MPMX20_03128: MPMX20_03128 - HTH-type transcriptional activator CmpR, at 3,287,069 to 3,287,935
_03128
Position (kb)
3285
3286
3287 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3284.535 kb on - strand, within MPMX20_03126 at 3284.545 kb on - strand, within MPMX20_03126 at 3284.604 kb on - strand, within MPMX20_03126 at 3284.614 kb on + strand, within MPMX20_03126 at 3284.637 kb on - strand, within MPMX20_03126 at 3284.739 kb on + strand, within MPMX20_03126 at 3284.740 kb on + strand, within MPMX20_03126 at 3284.741 kb on + strand, within MPMX20_03126 at 3284.755 kb on - strand, within MPMX20_03126 at 3284.786 kb on + strand, within MPMX20_03126 at 3284.794 kb on - strand, within MPMX20_03126 at 3284.794 kb on - strand, within MPMX20_03126 at 3284.818 kb on + strand, within MPMX20_03126 at 3284.826 kb on - strand, within MPMX20_03126 at 3284.828 kb on + strand, within MPMX20_03126 at 3284.828 kb on + strand, within MPMX20_03126 at 3284.828 kb on + strand, within MPMX20_03126 at 3284.828 kb on + strand, within MPMX20_03126 at 3284.828 kb on + strand, within MPMX20_03126 at 3284.828 kb on + strand, within MPMX20_03126 at 3284.836 kb on - strand, within MPMX20_03126 at 3284.836 kb on - strand, within MPMX20_03126 at 3284.836 kb on - strand, within MPMX20_03126 at 3284.836 kb on - strand, within MPMX20_03126 at 3284.836 kb on - strand, within MPMX20_03126 at 3284.973 kb on - strand, within MPMX20_03126 at 3285.018 kb on + strand, within MPMX20_03126 at 3285.061 kb on + strand, within MPMX20_03126 at 3285.128 kb on + strand, within MPMX20_03126 at 3285.148 kb on + strand, within MPMX20_03126 at 3285.198 kb on + strand at 3285.224 kb on + strand at 3285.271 kb on + strand at 3285.271 kb on + strand at 3285.279 kb on - strand at 3285.315 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.341 kb on + strand at 3285.349 kb on - strand at 3285.349 kb on - strand at 3285.349 kb on - strand at 3285.349 kb on - strand at 3285.349 kb on - strand at 3285.360 kb on + strand at 3285.360 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.406 kb on + strand at 3285.414 kb on - strand at 3285.414 kb on - strand at 3285.414 kb on - strand at 3285.414 kb on - strand at 3285.414 kb on - strand at 3285.414 kb on - strand at 3285.414 kb on - strand at 3285.491 kb on - strand at 3285.544 kb on + strand at 3285.544 kb on + strand at 3285.544 kb on + strand at 3285.652 kb on + strand, within MPMX20_03127 at 3285.660 kb on - strand, within MPMX20_03127 at 3285.851 kb on - strand, within MPMX20_03127 at 3285.901 kb on - strand, within MPMX20_03127 at 3285.922 kb on + strand, within MPMX20_03127 at 3285.985 kb on + strand, within MPMX20_03127 at 3285.985 kb on + strand, within MPMX20_03127 at 3285.985 kb on + strand, within MPMX20_03127 at 3285.985 kb on + strand, within MPMX20_03127 at 3285.985 kb on + strand, within MPMX20_03127 at 3286.011 kb on + strand, within MPMX20_03127 at 3286.011 kb on + strand, within MPMX20_03127 at 3286.011 kb on + strand, within MPMX20_03127 at 3286.019 kb on - strand, within MPMX20_03127 at 3286.019 kb on - strand, within MPMX20_03127 at 3286.019 kb on - strand, within MPMX20_03127 at 3286.051 kb on + strand, within MPMX20_03127 at 3286.051 kb on + strand, within MPMX20_03127 at 3286.082 kb on - strand, within MPMX20_03127 at 3286.087 kb on + strand, within MPMX20_03127 at 3286.096 kb on - strand, within MPMX20_03127 at 3286.137 kb on + strand, within MPMX20_03127 at 3286.187 kb on + strand, within MPMX20_03127 at 3286.239 kb on - strand, within MPMX20_03127 at 3286.346 kb on - strand, within MPMX20_03127 at 3286.346 kb on - strand, within MPMX20_03127 at 3286.372 kb on - strand, within MPMX20_03127 at 3286.427 kb on + strand, within MPMX20_03127 at 3286.505 kb on - strand, within MPMX20_03127 at 3286.505 kb on - strand, within MPMX20_03127 at 3286.505 kb on - strand, within MPMX20_03127 at 3286.543 kb on + strand, within MPMX20_03127 at 3286.543 kb on + strand, within MPMX20_03127 at 3286.551 kb on - strand, within MPMX20_03127 at 3286.584 kb on - strand, within MPMX20_03127 at 3286.586 kb on - strand, within MPMX20_03127 at 3286.604 kb on - strand, within MPMX20_03127 at 3286.604 kb on - strand, within MPMX20_03127 at 3286.613 kb on + strand, within MPMX20_03127 at 3286.621 kb on - strand, within MPMX20_03127 at 3286.722 kb on - strand, within MPMX20_03127 at 3286.722 kb on - strand, within MPMX20_03127 at 3286.843 kb on + strand at 3286.919 kb on - strand at 3286.969 kb on + strand at 3286.994 kb on - strand at 3287.046 kb on + strand at 3287.054 kb on - strand at 3287.054 kb on - strand at 3287.136 kb on - strand at 3287.154 kb on + strand at 3287.201 kb on - strand, within MPMX20_03128 at 3287.242 kb on + strand, within MPMX20_03128 at 3287.242 kb on + strand, within MPMX20_03128 at 3287.242 kb on + strand, within MPMX20_03128 at 3287.250 kb on - strand, within MPMX20_03128 at 3287.250 kb on - strand, within MPMX20_03128 at 3287.250 kb on - strand, within MPMX20_03128 at 3287.282 kb on - strand, within MPMX20_03128 at 3287.284 kb on + strand, within MPMX20_03128 at 3287.292 kb on - strand, within MPMX20_03128 at 3287.292 kb on - strand, within MPMX20_03128 at 3287.311 kb on + strand, within MPMX20_03128 at 3287.313 kb on + strand, within MPMX20_03128 at 3287.354 kb on + strand, within MPMX20_03128 at 3287.354 kb on + strand, within MPMX20_03128 at 3287.359 kb on + strand, within MPMX20_03128 at 3287.386 kb on - strand, within MPMX20_03128 at 3287.500 kb on - strand, within MPMX20_03128 at 3287.556 kb on - strand, within MPMX20_03128 at 3287.557 kb on - strand, within MPMX20_03128 at 3287.723 kb on - strand, within MPMX20_03128 at 3287.791 kb on + strand, within MPMX20_03128 at 3287.819 kb on + strand, within MPMX20_03128 at 3287.824 kb on + strand, within MPMX20_03128 at 3287.849 kb on - strand at 3287.849 kb on - strand at 3287.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,284,535 - MPMX20_03126 0.58 +0.4 3,284,545 - MPMX20_03126 0.58 -0.4 3,284,604 - MPMX20_03126 0.61 -0.0 3,284,614 + MPMX20_03126 0.62 -0.8 3,284,637 - MPMX20_03126 0.63 -0.2 3,284,739 + MPMX20_03126 0.68 -0.9 3,284,740 + MPMX20_03126 0.68 -1.3 3,284,741 + MPMX20_03126 0.68 -0.1 3,284,755 - MPMX20_03126 0.69 +0.9 3,284,786 + MPMX20_03126 0.70 +1.3 3,284,794 - MPMX20_03126 0.71 +0.6 3,284,794 - MPMX20_03126 0.71 -0.8 3,284,818 + MPMX20_03126 0.72 -2.5 3,284,826 - MPMX20_03126 0.72 -1.1 3,284,828 + MPMX20_03126 0.72 -0.2 3,284,828 + MPMX20_03126 0.72 +0.7 3,284,828 + MPMX20_03126 0.72 -0.1 3,284,828 + MPMX20_03126 0.72 -0.5 3,284,828 + MPMX20_03126 0.72 -0.3 3,284,828 + MPMX20_03126 0.72 -0.9 3,284,836 - MPMX20_03126 0.73 +0.7 3,284,836 - MPMX20_03126 0.73 -0.3 3,284,836 - MPMX20_03126 0.73 -0.4 3,284,836 - MPMX20_03126 0.73 -0.4 3,284,836 - MPMX20_03126 0.73 -1.8 3,284,973 - MPMX20_03126 0.80 +0.4 3,285,018 + MPMX20_03126 0.82 -0.0 3,285,061 + MPMX20_03126 0.84 -0.2 3,285,128 + MPMX20_03126 0.88 -1.1 3,285,148 + MPMX20_03126 0.89 -1.8 3,285,198 + +1.0 3,285,224 + -0.1 3,285,271 + +0.1 3,285,271 + -1.1 3,285,279 - +0.6 3,285,315 + -2.2 3,285,341 + +0.8 3,285,341 + +0.6 3,285,341 + -1.2 3,285,341 + +0.9 3,285,341 + +0.8 3,285,341 + +1.0 3,285,341 + +0.7 3,285,341 + -1.1 3,285,349 - +0.4 3,285,349 - -0.7 3,285,349 - -0.6 3,285,349 - +0.8 3,285,349 - -0.3 3,285,360 + +0.2 3,285,360 + -0.5 3,285,406 + -0.2 3,285,406 + -0.5 3,285,406 + +0.4 3,285,406 + -0.3 3,285,406 + +0.2 3,285,406 + +0.8 3,285,406 + -0.3 3,285,406 + -1.3 3,285,406 + -1.8 3,285,414 - +0.0 3,285,414 - -2.8 3,285,414 - +0.2 3,285,414 - -0.8 3,285,414 - +0.6 3,285,414 - -0.7 3,285,414 - -0.4 3,285,491 - -0.4 3,285,544 + -2.2 3,285,544 + -0.2 3,285,544 + -0.3 3,285,652 + MPMX20_03127 0.15 -0.1 3,285,660 - MPMX20_03127 0.16 +0.6 3,285,851 - MPMX20_03127 0.29 -1.4 3,285,901 - MPMX20_03127 0.32 -1.0 3,285,922 + MPMX20_03127 0.34 -1.4 3,285,985 + MPMX20_03127 0.38 +0.5 3,285,985 + MPMX20_03127 0.38 -0.1 3,285,985 + MPMX20_03127 0.38 -0.5 3,285,985 + MPMX20_03127 0.38 -0.2 3,285,985 + MPMX20_03127 0.38 -1.1 3,286,011 + MPMX20_03127 0.40 +0.3 3,286,011 + MPMX20_03127 0.40 +0.3 3,286,011 + MPMX20_03127 0.40 +0.1 3,286,019 - MPMX20_03127 0.40 -1.0 3,286,019 - MPMX20_03127 0.40 -0.7 3,286,019 - MPMX20_03127 0.40 -0.6 3,286,051 + MPMX20_03127 0.42 +2.0 3,286,051 + MPMX20_03127 0.42 -0.4 3,286,082 - MPMX20_03127 0.44 -0.7 3,286,087 + MPMX20_03127 0.45 -0.2 3,286,096 - MPMX20_03127 0.45 -0.9 3,286,137 + MPMX20_03127 0.48 +2.4 3,286,187 + MPMX20_03127 0.52 -1.8 3,286,239 - MPMX20_03127 0.55 -0.9 3,286,346 - MPMX20_03127 0.62 -0.0 3,286,346 - MPMX20_03127 0.62 -1.2 3,286,372 - MPMX20_03127 0.64 +0.4 3,286,427 + MPMX20_03127 0.68 +0.8 3,286,505 - MPMX20_03127 0.73 +0.1 3,286,505 - MPMX20_03127 0.73 -0.5 3,286,505 - MPMX20_03127 0.73 -0.1 3,286,543 + MPMX20_03127 0.76 -1.5 3,286,543 + MPMX20_03127 0.76 -0.2 3,286,551 - MPMX20_03127 0.76 +1.8 3,286,584 - MPMX20_03127 0.79 -0.7 3,286,586 - MPMX20_03127 0.79 -1.2 3,286,604 - MPMX20_03127 0.80 +1.2 3,286,604 - MPMX20_03127 0.80 +0.4 3,286,613 + MPMX20_03127 0.81 -1.2 3,286,621 - MPMX20_03127 0.81 -2.4 3,286,722 - MPMX20_03127 0.88 -0.7 3,286,722 - MPMX20_03127 0.88 +0.3 3,286,843 + -0.5 3,286,919 - +1.1 3,286,969 + +0.4 3,286,994 - -0.1 3,287,046 + -1.8 3,287,054 - +1.4 3,287,054 - -0.9 3,287,136 - -0.1 3,287,154 + -0.5 3,287,201 - MPMX20_03128 0.15 +0.4 3,287,242 + MPMX20_03128 0.20 -1.8 3,287,242 + MPMX20_03128 0.20 +0.3 3,287,242 + MPMX20_03128 0.20 -0.4 3,287,250 - MPMX20_03128 0.21 -0.9 3,287,250 - MPMX20_03128 0.21 +0.2 3,287,250 - MPMX20_03128 0.21 -2.2 3,287,282 - MPMX20_03128 0.25 -0.4 3,287,284 + MPMX20_03128 0.25 -0.7 3,287,292 - MPMX20_03128 0.26 +0.2 3,287,292 - MPMX20_03128 0.26 -1.2 3,287,311 + MPMX20_03128 0.28 +1.0 3,287,313 + MPMX20_03128 0.28 +1.8 3,287,354 + MPMX20_03128 0.33 -1.2 3,287,354 + MPMX20_03128 0.33 -1.2 3,287,359 + MPMX20_03128 0.33 -0.7 3,287,386 - MPMX20_03128 0.37 +0.1 3,287,500 - MPMX20_03128 0.50 -2.1 3,287,556 - MPMX20_03128 0.56 +0.1 3,287,557 - MPMX20_03128 0.56 +3.1 3,287,723 - MPMX20_03128 0.75 -0.1 3,287,791 + MPMX20_03128 0.83 -0.4 3,287,819 + MPMX20_03128 0.87 +0.6 3,287,824 + MPMX20_03128 0.87 -0.1 3,287,849 - -0.1 3,287,849 - +1.8 3,287,849 - -0.6
Or see this region's nucleotide sequence